Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0195700 Oryza sativa ssp. japonica HOM05D001418 ORTHO05D003753 5.0e-54 214.2 105 100.0
Zm00001eb202060 Zea mays HOM05D001418 ORTHO05D003753 1.4e-27 126.3 100 64.0
Zm00001eb112650 Zea mays HOM05D001418 ORTHO05D003753 5.2e-27 124.4 105 63.8
Zm00001eb408450 Zea mays HOM05D001418 ORTHO05D003753 2.7e-23 112.1 102 56.9
Os12g0182000 Oryza sativa ssp. japonica HOM05D001418 ORTHO05D003753 6.8e-19 97.4 63 66.7
QL10p041669 Quercus lobata HOM05D001418 ORTHO05D003753 1.0e-14 83.6 76 52.6
QL10p041870 Quercus lobata HOM05D001418 ORTHO05D003753 1.0e-14 83.6 76 52.6
HPP92_025164 Vanilla planifolia HOM05D001418 ORTHO05D003753 3.8e-14 81.6 68 54.4
HPP92_025177 Vanilla planifolia HOM05D001418 ORTHO05D003753 3.8e-14 81.6 68 54.4
Lj4g0007966 Lotus japonicus HOM05D001418 ORTHO05D003753 1.5e-13 79.7 64 54.7
Cfa021634 Carpinus fangiana HOM05D001418 ORTHO05D003753 1.9e-13 79.3 73 47.9
Cfa021635 Carpinus fangiana HOM05D001418 ORTHO05D003753 1.9e-13 79.3 73 47.9
CiPaw.04G080200 Carya illinoinensis HOM05D001418 ORTHO05D003753 3.2e-13 78.6 86 45.3
MELO3C023225.2 Cucumis melo HOM05D001418 ORTHO05D003753 3.2e-13 78.6 74 45.9
TPR.G37392 Trifolium pratense HOM05D001418 ORTHO05D003753 5.5e-13 77.8 73 46.6
arahy.Tifrunner.gnm1.ann1.QAD3X4 Arachis hypogaea HOM05D001418 ORTHO05D003753 7.2e-13 77.4 71 47.9
Haze_25311 Corylus avellana HOM05D001418 ORTHO05D003753 9.5e-13 77.0 71 46.5
Lalb_Chr12g0203061 Lupinus albus HOM05D001418 ORTHO05D003753 9.5e-13 77.0 73 47.9
Lalb_Chr13g0296701 Lupinus albus HOM05D001418 ORTHO05D003753 9.5e-13 77.0 64 51.6
ClCG02G000350 Citrullus lanatus HOM05D001418 ORTHO05D003753 1.2e-12 76.6 73 46.6
CsaV3_2G019490 Cucumis sativus L. HOM05D001418 ORTHO05D003753 1.2e-12 76.6 76 47.4
Medtr8g094040 Medicago truncatula HOM05D001418 ORTHO05D003753 1.6e-12 76.3 75 48.0
CiPaw.03G118600 Carya illinoinensis HOM05D001418 ORTHO05D003753 2.1e-12 75.9 78 46.2
Lalb_Chr07g0184281 Lupinus albus HOM05D001418 ORTHO05D003753 2.1e-12 75.9 74 45.9
Ciclev10003211m.g Citrus clementina HOM05D001418 ORTHO05D003753 2.7e-12 75.5 76 43.4
Haze_18313 Corylus avellana HOM05D001418 ORTHO05D003753 4.7e-12 74.7 73 45.2
Glyma.04G210600 Glycine max HOM05D001418 ORTHO05D003753 1.8e-11 72.8 73 43.8
Sabra07G0084500 Salix brachista HOM05D001418 ORTHO05D003753 2.3e-11 72.4 80 42.5
HPP92_004456 Vanilla planifolia HOM05D001418 ORTHO05D003753 3.0e-11 72.0 60 48.3
Glyma.06G155400 Glycine max HOM05D001418 ORTHO05D003753 4.0e-11 71.6 75 44.0
CiPaw.03G118500 Carya illinoinensis HOM05D001418 ORTHO05D003753 5.2e-11 71.2 62 46.8
Phvul.009G155100 Phaseolus vulgaris HOM05D001418 ORTHO05D003753 5.2e-11 71.2 68 42.6
MD02G1239600 Malus domestica HOM05D007511 ORTHO05D003753 6.8e-11 70.9 72 47.2
Psat7g044600 Pisum sativum HOM05D001418 ORTHO05D003753 6.8e-11 70.9 92 40.2
Prupe.4G274100 Prunus persica HOM05D001418 ORTHO05D003753 6.8e-11 70.9 104 39.4
Phvul.002G274200 Phaseolus vulgaris HOM05D001418 ORTHO05D003753 8.8e-11 70.5 74 45.9
Cpa.g.sc1441.4 Carica papaya HOM05D001418 ORTHO05D003753 1.2e-10 70.1 73 45.2
THA.LOC104804402 Tarenaya hassleriana HOM05D001418 ORTHO05D003753 1.2e-10 70.1 85 47.1
Eucgr.H05149 Eucalyptus grandis HOM05D001418 ORTHO05D003753 1.5e-10 69.7 79 40.5
Potri.005G066500 Populus trichocarpa HOM05D001418 ORTHO05D003753 1.5e-10 69.7 79 41.8
QL10p041674 Quercus lobata HOM05D001418 ORTHO05D003753 1.5e-10 69.7 62 43.5
QL10p041864 Quercus lobata HOM05D001418 ORTHO05D003753 1.5e-10 69.7 62 43.5
Sabra05G0054800 Salix brachista HOM05D001418 ORTHO05D003753 1.5e-10 69.7 79 39.2
TWI79G1507 Tripterygium wilfordii HOM05D001418 ORTHO05D003753 1.5e-10 69.7 73 43.8
Sed0024034 Sechium edule HOM05D001418 ORTHO05D003753 2.0e-10 69.3 73 42.5
VMungo0251G3540 Vigna mungo HOM05D001418 ORTHO05D003753 2.0e-10 69.3 81 40.7
Atru.chr4.944 Acer truncatum HOM05D001418 ORTHO05D003753 2.6e-10 68.9 81 38.3
CDE08G1405 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 2.6e-10 68.9 71 46.5
Duzib264G0973 Durio zibethinus HOM05D001418 ORTHO05D003753 3.4e-10 68.6 87 36.8
MD00G1091900 Malus domestica HOM05D001418 ORTHO05D003753 3.4e-10 68.6 79 43.0
Manes.12G158100 Manihot esculenta HOM05D001418 ORTHO05D003753 3.4e-10 68.6 76 43.4
Thecc.01G136200 Theobroma cacao HOM05D001418 ORTHO05D003753 3.4e-10 68.6 77 40.3
CDE02G0326 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 5.7e-10 67.8 70 47.1
Sed0004234 Sechium edule HOM05D001418 ORTHO05D003753 5.7e-10 67.8 73 43.8
Nn1g08946 Nelumbo nucifera HOM05D001418 ORTHO05D003753 7.5e-10 67.4 81 39.5
Glyma.08G001800 Glycine max HOM05D001418 ORTHO05D003753 9.8e-10 67.0 85 41.2
Gorai.011G118700 Gossypium raimondii HOM05D001418 ORTHO05D003753 1.3e-09 66.6 87 36.8
BcaNung04827 Brassica carinata HOM05D001418 ORTHO05D003753 1.7e-09 66.2 74 45.9
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 1.7e-09 66.2 96 37.5
Carub.0007s0979 Capsella rubella HOM05D001418 ORTHO05D003753 2.2e-09 65.9 74 43.2
Duzib128G1432 Durio zibethinus HOM05D007511 ORTHO05D003753 2.2e-09 65.9 66 43.9
CANSAT01G1075 Cannabis sativa HOM05D001418 ORTHO05D003753 2.8e-09 65.5 73 41.1
Gohir.D10G108200 Gossypium hirsutum HOM05D001418 ORTHO05D003753 2.8e-09 65.5 87 35.6
MBI06_g35216_MAGBIO Magnolia biondii HOM05D007511 ORTHO05D003753 2.8e-09 65.5 104 35.6
C01p08160 Brassica napus HOM05D001418 ORTHO05D003753 3.7e-09 65.1 86 40.7
BcaC09g51866 Brassica carinata HOM05D001418 ORTHO05D003753 4.9e-09 64.7 86 40.7
A01p07400 Brassica napus HOM05D001418 ORTHO05D003753 4.9e-09 64.7 86 40.7
BolC1t00803H Brassica oleracea HOM05D001418 ORTHO05D003753 4.9e-09 64.7 86 40.7
BraA01t00689Z Brassica rapa HOM05D001418 ORTHO05D003753 4.9e-09 64.7 86 40.7
Duzib187G1961 Durio zibethinus HOM05D001418 ORTHO05D003753 4.9e-09 64.7 74 37.8
AL7G21370 Arabidopsis lyrata HOM05D001418 ORTHO05D003753 6.3e-09 64.3 83 41.0
MD07G1077000 Malus domestica HOM05D007511 ORTHO05D003753 6.3e-09 64.3 108 36.1
AT4G30770 Arabidopsis thaliana HOM05D001418 ORTHO05D003753 8.3e-09 63.9 83 41.0
CARHR238610 Cardamine hirsuta HOM05D001418 ORTHO05D003753 8.3e-09 63.9 83 42.2
Thhalv10027257m.g Eutrema salsugineum HOM05D001418 ORTHO05D003753 8.3e-09 63.9 74 43.2
Gohir.A11G221900 Gossypium hirsutum HOM05D007511 ORTHO05D003753 8.3e-09 63.9 66 39.4
Nn1g09148 Nelumbo nucifera HOM05D007511 ORTHO05D003753 8.3e-09 63.9 72 40.3
PSO782G3115 Papaver somniferum HOM05D007511 ORTHO05D003753 1.1e-08 63.5 72 37.5
Prupe.2G098000 Prunus persica HOM05D007511 ORTHO05D003753 1.1e-08 63.5 89 37.1
PSO063G5504 Papaver somniferum HOM05D007511 ORTHO05D003753 1.4e-08 63.2 72 36.1
BcaNung01562 Brassica carinata HOM05D001418 ORTHO05D003753 1.8e-08 62.8 74 41.9
BcaNung02743 Brassica carinata HOM05D001418 ORTHO05D003753 1.8e-08 62.8 74 41.9
A03p60290 Brassica napus HOM05D001418 ORTHO05D003753 1.8e-08 62.8 74 41.9
C07p58200 Brassica napus HOM05D001418 ORTHO05D003753 1.8e-08 62.8 74 41.9
BolC7t46274H Brassica oleracea HOM05D001418 ORTHO05D002038 1.8e-08 62.8 74 41.9
BraA03t15071Z Brassica rapa HOM05D001418 ORTHO05D003753 1.8e-08 62.8 74 41.9
VMungo1309G0848 Vigna mungo HOM05D001418 ORTHO05D003753 1.8e-08 62.8 68 41.2
FAN01G1810 Fragaria x ananassa HOM05D007511 ORTHO05D003753 2.4e-08 62.4 88 39.8
RcHm_v2.0_Chr1g0337051 Rosa chinensis HOM05D007511 ORTHO05D003753 2.4e-08 62.4 78 41.0
Sc16g0009500 Simmondsia chinensis HOM05D001418 ORTHO05D003753 2.4e-08 62.4 96 36.5
ATR1001G015 Amborella trichopoda HOM05D007511 ORTHO05D003753 3.1e-08 62.0 94 37.2
FAN03G1709 Fragaria x ananassa HOM05D007511 ORTHO05D003753 3.1e-08 62.0 88 38.6
Gohir.A09G005000 Gossypium hirsutum HOM05D001418 ORTHO05D003753 3.1e-08 62.0 74 39.2
Gohir.A10G157222 Gossypium hirsutum HOM05D001418 ORTHO05D003753 3.1e-08 62.0 87 34.5
Gohir.D11G061300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 3.1e-08 62.0 69 36.2
Gohir.D11G235550 Gossypium hirsutum HOM05D007511 ORTHO05D003753 3.1e-08 62.0 66 37.9
THA.LOC104804459 Tarenaya hassleriana HOM05D001418 ORTHO05D003753 3.1e-08 62.0 82 40.2
TAR625G0656 Trochodendron aralioides HOM05D001418 ORTHO05D003753 3.1e-08 62.0 60 40.0
FvH4_1g24680 Fragaria vesca HOM05D001418 ORTHO05D003753 4.1e-08 61.6 71 40.8
FAN19G0125 Fragaria x ananassa HOM05D001418 ORTHO05D003753 4.1e-08 61.6 71 40.8
Gorai.007G066200 Gossypium raimondii HOM05D001418 ORTHO05D003753 4.1e-08 61.6 69 36.2
FvH4_7g07110 Fragaria vesca HOM05D007511 ORTHO05D003753 5.4e-08 61.2 86 39.5
FAN06G3938 Fragaria x ananassa HOM05D007511 ORTHO05D003753 5.4e-08 61.2 86 39.5
Gohir.D09G004300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 5.4e-08 61.2 74 39.2
Gorai.006G005900 Gossypium raimondii HOM05D001418 ORTHO05D003753 5.4e-08 61.2 74 39.2
PGR004G1271 Punica granatum HOM05D007511 ORTHO05D003753 5.4e-08 61.2 69 43.5
Gohir.A11G057300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 7.0e-08 60.8 60 38.3
Gorai.007G248300 Gossypium raimondii HOM05D007511 ORTHO05D003753 9.2e-08 60.5 65 38.5
Sp7g28640 Schrenkiella parvula HOM05D001418 ORTHO05D003753 9.2e-08 60.5 83 39.8
PGR102G3103 Punica granatum HOM05D001418 ORTHO05D003753 1.2e-07 60.1 89 37.1
Duzib177G0499 Durio zibethinus HOM05D007511 ORTHO05D003753 1.6e-07 59.7 66 39.4
FAN26G3393 Fragaria x ananassa HOM05D001418 ORTHO05D003753 1.6e-07 59.7 86 38.4
TAR381G0240 Trochodendron aralioides HOM05D001418 ORTHO05D004504 1.6e-07 59.7 62 45.2
CiPaw.02G046500 Carya illinoinensis HOM05D007511 ORTHO05D003753 2.7e-07 58.9 68 36.8
Cfa000931 Carpinus fangiana HOM05D007511 ORTHO05D003753 3.5e-07 58.5 62 41.9
TAR628G0376 Trochodendron aralioides HOM05D001418 ORTHO05D003753 7.7e-07 57.4 64 39.1
Sed0019168 Sechium edule HOM05D007511 ORTHO05D003753 1.3e-06 56.6 68 38.2
RcHm_v2.0_Chr2g0122171 Rosa chinensis HOM05D001418 ORTHO05D003753 2.3e-06 55.8 55 49.1
TWI60G1247 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 2.3e-06 55.8 88 33.0
CANSAT35G2046 Cannabis sativa HOM05D007511 ORTHO05D003753 3.8e-06 55.1 63 44.4
TAR629G3237 Trochodendron aralioides HOM05D007511 ORTHO05D003753 5.0e-06 54.7 94 30.9
TWI34G0987 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 6.6e-06 54.3 84 34.5


User provided reference genes

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