Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0194050 Oryza sativa ssp. japonica HOM05D000003 ORTHO05D015636 4.3e-62 241.1 120 100.0
Os06g0484800 Oryza sativa ssp. japonica HOM05D000003 ORTHO05D000004 4.0e-23 111.7 118 54.2
Os06g0205337 Oryza sativa ssp. japonica HOM05D000003 ORTHO05D000006 5.7e-22 107.8 121 49.6
Os11g0298866 Oryza sativa ssp. japonica HOM05D000003 ORTHO05D000006 3.0e-15 85.5 72 56.9
MBI14_g42127_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 1.7e-10 69.7 116 36.2
Os10g0351414 Oryza sativa ssp. japonica HOM05D000003 ORTHO05D000006 6.6e-10 67.8 47 63.8
RcHm_v2.0_Chr2g0136131 Rosa chinensis HOM05D000003 ORTHO05D000006 6.6e-10 67.8 128 33.6
CANSAT35G1450 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-09 66.6 117 34.2
CANSAT80G1695 Cannabis sativa HOM05D000003 ORTHO05D000004 3.3e-09 65.5 117 32.5
Aa31sc808G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.2e-09 65.1 116 33.6
RcHm_v2.0_Chr1g0328181 Rosa chinensis HOM05D000003 ORTHO05D000004 5.5e-09 64.7 120 35.8
CANSAT01G2163 Cannabis sativa HOM05D000003 ORTHO05D000126 9.5e-09 63.9 116 31.9
COL.COLO4_25383 Corchorus olitorius HOM05D000003 ORTHO05D000006 9.5e-09 63.9 117 35.9
CANSAT56G2204 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-08 63.5 116 32.8
TPR.G13108 Trifolium pratense HOM05D000003 ORTHO05D000004 1.6e-08 63.2 117 35.9
CANSAT21G1076 Cannabis sativa HOM05D000003 ORTHO05D000004 2.1e-08 62.8 119 31.1
QL03p033496 Quercus lobata HOM05D000003 ORTHO05D000004 2.1e-08 62.8 117 31.6
SHI28443 Sapria himalayana HOM05D000024 ORTHO05D000006 2.1e-08 62.8 116 33.6
Aa31sc360G50 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.7e-08 61.6 117 32.5
CANSAT80G0163 Cannabis sativa HOM05D000003 ORTHO05D000006 4.7e-08 61.6 120 30.0
CANSAT64G0360 Cannabis sativa HOM05D000003 ORTHO05D000004 6.1e-08 61.2 116 31.9
CANSAT56G1157 Cannabis sativa HOM05D000003 ORTHO05D000004 8.0e-08 60.8 116 31.9
CiPaw.01G083900 Carya illinoinensis HOM05D000003 ORTHO05D000004 8.0e-08 60.8 115 34.8
RcHm_v2.0_Chr1g0340391 Rosa chinensis HOM05D000003 ORTHO05D000004 8.0e-08 60.8 117 32.5
Aqoxy3G02253 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 1.0e-07 60.5 116 34.5
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 1.0e-07 60.5 116 33.6
PSO170G6863 Papaver somniferum HOM05D008740 ORTHO05D006738 1.0e-07 60.5 123 33.3
PSO384G0924 Papaver somniferum HOM05D000003 ORTHO05D000006 1.4e-07 60.1 115 33.0
CANSAT21G1152 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-07 59.7 116 31.9
CANSAT80G0199 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-07 59.7 119 30.3
FvH4_4g33331 Fragaria vesca HOM05D000003 ORTHO05D000004 1.8e-07 59.7 114 35.1
Nn3g17028 Nelumbo nucifera HOM05D000003 ORTHO05D000006 1.8e-07 59.7 122 29.5
RcHm_v2.0_Chr4g0414741 Rosa chinensis HOM05D000003 ORTHO05D000006 1.8e-07 59.7 119 30.3
QL08p005297 Quercus lobata HOM05D000003 ORTHO05D000006 2.3e-07 59.3 118 35.6
QL09p011339 Quercus lobata HOM05D000003 ORTHO05D000006 2.3e-07 59.3 120 36.7
Rhsim01G0109500 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.3e-07 59.3 117 32.5
TPR.G31746 Trifolium pratense HOM05D000003 ORTHO05D000004 2.3e-07 59.3 122 32.8
Aqoxy1G02340 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 3.0e-07 58.9 117 31.6
CANSAT80G2861 Cannabis sativa HOM05D000003 ORTHO05D000004 3.0e-07 58.9 116 33.6
Rhsim05G0174100 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.0e-07 58.9 120 33.3
TPR.G21415 Trifolium pratense HOM05D000003 ORTHO05D000004 3.0e-07 58.9 120 31.7
PSO478G1779 Papaver somniferum HOM05D000003 ORTHO05D000006 4.0e-07 58.5 117 33.3
SHI41687 Sapria himalayana HOM05D000024 ORTHO05D000006 4.0e-07 58.5 116 30.2
CANSAT11G2372 Cannabis sativa HOM05D000003 ORTHO05D000004 5.2e-07 58.2 116 32.8
PSO063G6757 Papaver somniferum HOM05D000003 ORTHO05D000006 5.2e-07 58.2 121 33.1
PSO339G0091 Papaver somniferum HOM05D000003 ORTHO05D000006 5.2e-07 58.2 108 36.1
TPR.G7655 Trifolium pratense HOM05D000003 ORTHO05D000004 5.2e-07 58.2 120 33.3
TAR014G0001 Trochodendron aralioides HOM05D000003 ORTHO05D000004 5.2e-07 58.2 116 32.8
Atru.chr2.931 Acer truncatum HOM05D000003 ORTHO05D000004 6.8e-07 57.8 63 46.0
CANSAT56G0265 Cannabis sativa HOM05D000003 ORTHO05D000006 6.8e-07 57.8 119 33.6
CANSAT64G1355 Cannabis sativa HOM05D000003 ORTHO05D000006 6.8e-07 57.8 120 30.8
Rhsim06G0055700 Rhododendron simsii HOM05D000003 ORTHO05D000004 6.8e-07 57.8 117 31.6
SHI37947 Sapria himalayana HOM05D000024 ORTHO05D000006 6.8e-07 57.8 115 32.2
Aa31sc734G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.9e-07 57.4 117 30.8
CANSAT21G0602 Cannabis sativa HOM05D000003 ORTHO05D000006 8.9e-07 57.4 119 31.9
CANSAT64G1939 Cannabis sativa HOM05D000003 ORTHO05D000004 8.9e-07 57.4 119 32.8
Haze_17871 Corylus avellana HOM05D039975 ORTHO05D029141 8.9e-07 57.4 68 39.7
TPR.G40859 Trifolium pratense HOM05D000003 ORTHO05D000004 8.9e-07 57.4 122 32.0
CANSAT11G0192 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-06 57.0 116 32.8
QL02p101822 Quercus lobata HOM05D000003 ORTHO05D000004 1.2e-06 57.0 115 30.4
QL10p024010 Quercus lobata HOM05D000003 ORTHO05D000004 1.2e-06 57.0 117 34.2
RcHm_v2.0_Chr1g0342601 Rosa chinensis HOM05D000003 ORTHO05D000006 1.2e-06 57.0 64 43.8
SHI35331 Sapria himalayana HOM05D000003 ORTHO05D000004 1.2e-06 57.0 116 30.2
Aa31LG9G15190 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.5e-06 56.6 117 28.2
CANSAT11G1313 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-06 56.6 116 31.0
CANSAT56G4495 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-06 56.6 119 33.6
ECA246G1600 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.5e-06 56.6 122 29.5
MBI01_g01353_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000006 1.5e-06 56.6 119 31.1
QL02p097725 Quercus lobata HOM05D000003 ORTHO05D000004 1.5e-06 56.6 125 33.6
QL05p073923 Quercus lobata HOM05D000003 ORTHO05D000006 1.5e-06 56.6 123 30.9
SHI21940 Sapria himalayana HOM05D000024 ORTHO05D000006 1.5e-06 56.6 116 29.3
SHI28637 Sapria himalayana HOM05D000003 ORTHO05D000004 1.5e-06 56.6 116 29.3
CANSAT21G2062 Cannabis sativa HOM05D000003 ORTHO05D000006 2.0e-06 56.2 117 31.6
CANSAT78G2353 Cannabis sativa HOM05D000003 ORTHO05D000004 2.0e-06 56.2 116 29.3
Dinv02090 Davidia involucrata HOM05D013557 ORTHO05D015636 2.0e-06 56.2 68 44.1
MBI14_g11584_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000006 2.0e-06 56.2 116 32.8
SHI19572 Sapria himalayana HOM05D000003 ORTHO05D000004 2.0e-06 56.2 115 30.4
Sabra08G0134900 Salix brachista HOM05D000003 ORTHO05D000006 2.6e-06 55.8 75 42.7
SHI19546 Sapria himalayana HOM05D000003 ORTHO05D000006 2.6e-06 55.8 116 31.0
TPR.G9398 Trifolium pratense HOM05D000003 ORTHO05D000004 2.6e-06 55.8 120 35.0
HPP92_023811 Vanilla planifolia HOM05D000003 ORTHO05D000004 2.6e-06 55.8 119 31.1
Atru.chr10.1275 Acer truncatum HOM05D000003 ORTHO05D000004 3.4e-06 55.5 67 41.8
Atru.chr2.2490 Acer truncatum HOM05D000003 ORTHO05D000004 3.4e-06 55.5 120 29.2
CANSAT78G0730 Cannabis sativa HOM05D000003 ORTHO05D000004 3.4e-06 55.5 116 31.9
FvH4_2g12222 Fragaria vesca HOM05D000003 ORTHO05D000006 3.4e-06 55.5 64 40.6
FvH4_6g27602 Fragaria vesca HOM05D000003 ORTHO05D000006 3.4e-06 55.5 69 39.1
PSO135G0496 Papaver somniferum HOM05D000003 ORTHO05D000006 3.4e-06 55.5 118 35.6
PSO801G0148 Papaver somniferum HOM05D000003 ORTHO05D000004 3.4e-06 55.5 118 33.9
Sabra02G0135700 Salix brachista HOM05D000003 ORTHO05D000006 3.4e-06 55.5 75 42.7
SHI54733 Sapria himalayana HOM05D000024 ORTHO05D000006 3.4e-06 55.5 116 27.6
Sopen06g013950 Solanum pennellii HOM05D000003 ORTHO05D000004 3.4e-06 55.5 114 27.2
TPR.G31906 Trifolium pratense HOM05D000003 ORTHO05D000006 3.4e-06 55.5 66 40.9
TAR256G0001 Trochodendron aralioides HOM05D000003 ORTHO05D000004 3.4e-06 55.5 66 42.4
Atru.chr6.242 Acer truncatum HOM05D000003 ORTHO05D000006 4.4e-06 55.1 84 39.3
Aa31LG11G11010 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.4e-06 55.1 119 29.4
CANSAT35G1518 Cannabis sativa HOM05D000003 ORTHO05D000004 4.4e-06 55.1 119 32.8
CANSAT56G3772 Cannabis sativa HOM05D000003 ORTHO05D000004 4.4e-06 55.1 116 31.0
CANSAT78G1176 Cannabis sativa HOM05D000003 ORTHO05D000004 4.4e-06 55.1 117 31.6
AUR62003020 Chenopodium quinoa HOM05D000003 ORTHO05D000004 4.4e-06 55.1 67 35.8
Nn6g35689 Nelumbo nucifera HOM05D000003 ORTHO05D000004 4.4e-06 55.1 74 35.1
SHI46014 Sapria himalayana HOM05D000003 ORTHO05D000004 4.4e-06 55.1 116 31.0
SHI55139 Sapria himalayana HOM05D000003 ORTHO05D000004 4.4e-06 55.1 116 29.3
Atru.chr7.1503 Acer truncatum HOM05D000003 ORTHO05D000006 5.7e-06 54.7 71 39.4
Aa31LG2G16390 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.7e-06 54.7 117 29.9
CANSAT01G0793 Cannabis sativa HOM05D000003 ORTHO05D000004 5.7e-06 54.7 116 30.2
CANSAT54G0843 Cannabis sativa HOM05D000003 ORTHO05D000006 5.7e-06 54.7 116 27.6
CANSAT78G0786 Cannabis sativa HOM05D000003 ORTHO05D000004 5.7e-06 54.7 126 31.7
FvH4_1g26332 Fragaria vesca HOM05D000003 ORTHO05D000004 5.7e-06 54.7 117 30.8
SHI30807 Sapria himalayana HOM05D000003 ORTHO05D000004 5.7e-06 54.7 116 35.3
Atru.chr4.851 Acer truncatum HOM05D000003 ORTHO05D000004 7.5e-06 54.3 116 31.0
Aa31LG11G5950 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.5e-06 54.3 117 29.1
EL10Ac8g19110 Beta vulgaris HOM05D000003 ORTHO05D000004 7.5e-06 54.3 116 34.5
CANSAT21G0495 Cannabis sativa HOM05D000003 ORTHO05D000004 7.5e-06 54.3 116 30.2
CANSAT78G1465 Cannabis sativa HOM05D000003 ORTHO05D000004 7.5e-06 54.3 125 30.4
SHI20839 Sapria himalayana HOM05D000003 ORTHO05D000004 7.5e-06 54.3 117 33.3
SHI30232 Sapria himalayana HOM05D000003 ORTHO05D000004 7.5e-06 54.3 116 31.0
CANSAT21G1305 Cannabis sativa HOM05D000003 ORTHO05D000006 9.8e-06 53.9 116 31.0
CANSAT21G1403 Cannabis sativa HOM05D000003 ORTHO05D000004 9.8e-06 53.9 116 30.2
CANSAT25G0988 Cannabis sativa HOM05D000003 ORTHO05D000006 9.8e-06 53.9 75 41.3
CANSAT54G2484 Cannabis sativa HOM05D000003 ORTHO05D000004 9.8e-06 53.9 116 29.3
CANSAT80G0065 Cannabis sativa HOM05D000003 ORTHO05D000004 9.8e-06 53.9 119 27.7
Manes.01G065050 Manihot esculenta HOM05D000003 ORTHO05D000006 9.8e-06 53.9 116 34.5
QL08p033637 Quercus lobata HOM05D000003 ORTHO05D000006 9.8e-06 53.9 118 31.4
SHI34262 Sapria himalayana HOM05D000003 ORTHO05D000006 9.8e-06 53.9 116 30.2
TPR.G23914 Trifolium pratense HOM05D000003 ORTHO05D000004 9.8e-06 53.9 113 32.7


User provided reference genes

Program Settings