Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0191300 Oryza sativa ssp. japonica HOM05D001245 ORTHO05D004475 5.2e-125 451.1 225 100.0
Zm00001eb091010 Zea mays HOM05D001245 ORTHO05D004475 7.8e-97 357.5 216 79.2
MBI06_g35213_MAGBIO Magnolia biondii HOM05D001245 ORTHO05D004475 8.1e-86 320.9 194 73.2
Cc02_g29380 Coffea canephora HOM05D001245 ORTHO05D004475 1.2e-81 307.0 191 70.2
Manes.02G168200 Manihot esculenta HOM05D001245 ORTHO05D004475 1.2e-81 307.0 195 71.8
Nn1g08963 Nelumbo nucifera HOM05D001245 ORTHO05D004475 1.2e-81 307.0 191 72.8
Potri.005G182500 Populus trichocarpa HOM05D001245 ORTHO05D004475 3.5e-81 305.4 191 71.2
TWI34G1866 Tripterygium wilfordii HOM05D001245 ORTHO05D004475 3.5e-81 305.4 195 69.7
CARHR070810 Cardamine hirsuta HOM05D001245 ORTHO05D004475 1.3e-80 303.5 191 69.1
Sabra05G0138300 Salix brachista HOM05D001245 ORTHO05D004475 1.7e-80 303.1 192 70.3
HPP92_002227 Vanilla planifolia HOM05D001245 ORTHO05D004475 2.3e-80 302.8 190 72.1
TAR229G0002 Trochodendron aralioides HOM05D001245 ORTHO05D004475 5.1e-80 301.6 192 69.3
Actinidia03424 Actinidia chinensis HOM05D001245 ORTHO05D004475 6.6e-80 301.2 192 70.8
Aa31LG4G7350 Aethionema arabicum HOM05D001245 ORTHO05D004475 6.6e-80 301.2 191 69.1
QL09p032547 Quercus lobata HOM05D001245 ORTHO05D004475 8.6e-80 300.8 195 68.7
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 1.5e-79 300.1 192 67.7
THA.LOC104800232 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 1.9e-79 299.7 191 68.6
THA.LOC104810225 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 1.9e-79 299.7 191 68.6
Prupe.1G489800 Prunus persica HOM05D001245 ORTHO05D004475 4.3e-79 298.5 205 66.8
Dinv14685 Davidia involucrata HOM05D001245 ORTHO05D004475 5.6e-79 298.1 192 69.8
Thecc.08G132800 Theobroma cacao HOM05D001245 ORTHO05D004475 5.6e-79 298.1 195 68.2
Lsat_1_v5_gn_1_9620 Lactuca sativa HOM05D001245 ORTHO05D004475 7.3e-79 297.7 195 67.2
Cpa.g.sc64.150 Carica papaya HOM05D001245 ORTHO05D004475 9.5e-79 297.4 195 67.7
Atru.chr13.1560 Acer truncatum HOM05D001245 ORTHO05D004475 1.6e-78 296.6 195 70.3
Carub.0002s2420 Capsella rubella HOM05D001245 ORTHO05D004475 1.6e-78 296.6 191 68.1
Aqoxy6G00310 Aquilegia oxysepala HOM05D001245 ORTHO05D004475 2.1e-78 296.2 195 67.7
CSS0013013 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 6.2e-78 294.7 192 67.2
CSS0038833 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 6.2e-78 294.7 192 67.2
Eucgr.F03843 Eucalyptus grandis HOM05D001245 ORTHO05D004475 8.1e-78 294.3 189 70.4
Lsat_1_v5_gn_1_6740 Lactuca sativa HOM05D001245 ORTHO05D004475 8.1e-78 294.3 195 66.7
BolC6t40166H Brassica oleracea HOM05D001245 ORTHO05D004475 1.4e-77 293.5 191 67.5
Duzib093G0162 Durio zibethinus HOM05D001245 ORTHO05D004475 1.8e-77 293.1 195 66.2
Sp5g32500 Schrenkiella parvula HOM05D001245 ORTHO05D004475 1.8e-77 293.1 191 66.5
ECA233G0473 Erigeron canadensis HOM05D001245 ORTHO05D004475 3.1e-77 292.4 195 66.2
Nitab4.5_0000316g0190 Nicotiana tabacum HOM05D001245 ORTHO05D004475 4.0e-77 292.0 191 67.5
AL2G37520 Arabidopsis lyrata HOM05D001245 ORTHO05D004475 5.2e-77 291.6 191 68.6
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 8.9e-77 290.8 220 63.6
AT1G77320 Arabidopsis thaliana HOM05D001245 ORTHO05D004475 1.2e-76 290.4 191 67.5
BcaC08g47618 Brassica carinata HOM05D001245 ORTHO05D004475 1.2e-76 290.4 191 67.0
A07p42860 Brassica napus HOM05D001245 ORTHO05D004475 1.2e-76 290.4 191 67.0
C06p51480 Brassica napus HOM05D001245 ORTHO05D004475 1.2e-76 290.4 191 67.0
Sopen01g030200 Solanum pennellii HOM05D001245 ORTHO05D004475 1.2e-76 290.4 191 68.6
CANSAT80G2764 Cannabis sativa HOM05D001245 ORTHO05D004475 1.5e-76 290.0 196 64.8
DCAR_003586 Daucus carota HOM05D001245 ORTHO05D005230 1.5e-76 290.0 192 66.7
Solyc01g068260.4 Solanum lycopersicum HOM05D001245 ORTHO05D004475 1.5e-76 290.0 191 68.6
CANSAT25G1503 Cannabis sativa HOM05D001245 ORTHO05D004475 2.0e-76 289.7 193 67.4
MD08G1159100 Malus domestica HOM05D001245 ORTHO05D004475 2.0e-76 289.7 198 66.2
Sed0010713 Sechium edule HOM05D001245 ORTHO05D004475 2.0e-76 289.7 191 69.1
ClCG11G015970 Citrullus lanatus HOM05D001245 ORTHO05D004475 3.4e-76 288.9 206 64.6
FvH4_2g27821 Fragaria vesca HOM05D001245 ORTHO05D004475 4.4e-76 288.5 191 67.0
GSVIVG01008809001 Vitis vinifera HOM05D001245 ORTHO05D004475 4.4e-76 288.5 195 66.7
Gorai.013G107700 Gossypium raimondii HOM05D001245 ORTHO05D004475 7.6e-76 287.7 198 64.6
Lj4C682G10 Lonicera japonica HOM05D001245 ORTHO05D004475 7.6e-76 287.7 184 68.5
CAN.G410.40 Capsicum annuum HOM05D001245 ORTHO05D004475 1.3e-75 287.0 191 67.0
Gohir.D03G069003 Gossypium hirsutum HOM05D001245 ORTHO05D004475 1.7e-75 286.6 198 64.1
SEGI_34477 Sequoiadendron giganteum HOM05D001245 ORTHO05D004475 2.9e-75 285.8 189 66.1
RcHm_v2.0_Chr6g0296691 Rosa chinensis HOM05D001245 ORTHO05D004475 3.7e-75 285.4 196 65.8
Cfa018127 Carpinus fangiana HOM05D001245 ORTHO05D004475 4.9e-75 285.0 194 67.5
Sc26g0002950 Simmondsia chinensis HOM05D001245 ORTHO05D004475 6.4e-75 284.6 191 66.5
HanXRQChr02g0040561 Helianthus annuus HOM05D001245 ORTHO05D004475 1.9e-74 283.1 222 60.4
PGR042G0290 Punica granatum HOM05D001245 ORTHO05D004475 2.4e-74 282.7 196 66.3
arahy.Tifrunner.gnm1.ann1.69Q1HU Arachis hypogaea HOM05D001245 ORTHO05D004475 3.2e-74 282.3 193 66.8
FAN24G2504 Fragaria x ananassa HOM05D001245 ORTHO05D005230 3.2e-74 282.3 196 65.3
Gohir.A02G110400 Gossypium hirsutum HOM05D001245 ORTHO05D004475 3.2e-74 282.3 198 63.6
ATR0561G100 Amborella trichopoda HOM05D001245 ORTHO05D004475 7.1e-74 281.2 184 67.4
arahy.Tifrunner.gnm1.ann1.TXAW3L Arachis hypogaea HOM05D001245 ORTHO05D004475 9.2e-74 280.8 193 66.3
Lj1g0014366 Lotus japonicus HOM05D001245 ORTHO05D004475 1.2e-73 280.4 189 65.6
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 1.6e-73 280.0 189 66.1
Lalb_Chr17g0343591 Lupinus albus HOM05D001245 ORTHO05D004475 2.1e-73 279.6 193 64.8
CsaV3_4G028020 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.7e-73 279.3 174 72.4
Thhalv10018076m.g Eutrema salsugineum HOM05D001245 ORTHO05D004475 4.6e-73 278.5 191 65.4
PSO170G6194 Papaver somniferum HOM05D001245 ORTHO05D004475 1.3e-72 276.9 196 61.7
SalBow6G4599 Salvia bowleyana HOM05D001245 ORTHO05D004475 1.3e-72 276.9 192 64.1
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 1.7e-72 276.6 193 62.7
PSO528G0248 Papaver somniferum HOM05D001245 ORTHO05D004475 5.1e-72 275.0 196 61.7
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 5.1e-72 275.0 198 60.6
Ca_12648_v3 Cicer arietinum L. HOM05D001245 ORTHO05D005230 8.6e-72 274.2 193 62.2
BraA07t31807Z Brassica rapa HOM05D001245 ORTHO05D004475 1.1e-71 273.9 223 57.4
Phvul.002G078200 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 1.1e-71 273.9 193 63.7
Hund26774 Selenicereus undatus HOM05D001245 ORTHO05D004475 9.6e-71 270.8 204 60.8
vmacro10605 Vaccinium macrocarpon HOM05D001245 ORTHO05D004475 8.1e-70 267.7 194 63.9
Medtr1g029630 Medicago truncatula HOM05D001245 ORTHO05D004475 1.1e-69 267.3 190 62.6
EL10Ac1g01344 Beta vulgaris HOM05D001245 ORTHO05D004475 1.4e-69 266.9 191 63.9
Nitab4.5_0001543g0060 Nicotiana tabacum HOM05D001245 ORTHO05D004475 7.6e-60 234.6 191 57.1
MELO3C010511.2 Cucumis melo HOM05D001245 ORTHO05D004475 2.2e-59 233.0 224 51.8
FAN27G0075 Fragaria x ananassa HOM05D001245 ORTHO05D005230 2.1e-57 226.5 159 66.0
FAN15G0291 Fragaria x ananassa HOM05D001245 ORTHO05D005230 2.7e-57 226.1 159 66.0
Ah.05g169150 Amaranthus hybridus HOM05D001245 ORTHO05D004475 3.0e-56 222.6 199 53.3
FAN20G0097 Fragaria x ananassa HOM05D001245 ORTHO05D004475 3.0e-56 222.6 159 65.4
Mapoly0158s0032 Marchantia polymorpha HOM05D001245 ORTHO05D004475 1.6e-54 216.9 189 50.3
unitig_21.g20280 Utricularia gibba HOM05D001245 ORTHO05D004475 5.3e-53 211.8 176 57.4
Pp3c3_700 Physcomitrium patens HOM05D001245 ORTHO05D004475 1.2e-52 210.7 189 48.7
Medtr7g090980 Medicago truncatula HOM05D001245 ORTHO05D004475 1.7e-51 206.8 195 49.2
Oeu009633.1 Olea europaea HOM05D001245 ORTHO05D004475 2.2e-51 206.5 131 72.5
Migut.N01819 Erythranthe guttata HOM05D001245 ORTHO05D004475 2.1e-46 189.9 124 69.4
SHI09206 Sapria himalayana HOM05D001245 ORTHO05D004475 4.8e-46 188.7 160 55.6
CsaV3_UNG115900 Cucumis sativus L. HOM05D001245 ORTHO05D004475 5.3e-45 185.3 173 52.6
COL.COLO4_08845 Corchorus olitorius HOM05D001245 ORTHO05D004475 1.1e-39 167.5 191 45.5
SMO269G0035 Selaginella moellendorffii HOM05D001245 ORTHO05D004475 2.1e-38 163.3 194 43.3
Peaxi162Scf00087g00021 Petunia axillaris HOM05D001245 ORTHO05D004475 1.4e-34 150.6 151 49.7
AUR62007718 Chenopodium quinoa HOM05D001245 ORTHO05D004475 7.2e-34 148.3 137 51.8
CsaV3_UNG224670 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.3e-32 144.1 96 68.8
CsaV3_UNG111830 Cucumis sativus L. HOM05D001245 ORTHO05D004475 3.9e-32 142.5 96 67.7
CsaV3_UNG224630 Cucumis sativus L. HOM05D001245 ORTHO05D004475 3.9e-32 142.5 96 67.7
CsaV3_3G026510 Cucumis sativus L. HOM05D001245 ORTHO05D004475 7.4e-31 138.3 96 66.7
Rhsim11G0071500 Rhododendron simsii HOM05D001245 ORTHO05D004475 5.5e-26 122.1 98 59.2
Phvul.001G070600 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 5.7e-23 112.1 79 63.3
Pp3c19_810 Physcomitrium patens HOM05D001245 ORTHO05D004475 2.4e-21 106.7 133 39.8
RcHm_v2.0_Chr7g0211681 Rosa chinensis HOM05D001245 ORTHO05D004475 5.3e-21 105.5 73 61.6
Hma1.2p1_0014F.1_g010210 Hydrangea macrophylla HOM05D001245 ORTHO05D004475 9.1e-21 104.8 94 53.2
SHI09208 Sapria himalayana HOM05D001245 ORTHO05D000023 2.2e-14 83.6 49 65.3
CsaV3_3G026500 Cucumis sativus L. HOM05D001245 ORTHO05D004475 6.3e-14 82.0 54 64.8
AUR62013424 Chenopodium quinoa HOM05D001245 ORTHO05D004475 1.4e-13 80.9 98 41.8
CBR_g37446 Chara braunii HOM05D001245 ORTHO05D004475 1.8e-13 80.5 75 46.7
CsaV3_UNG224660 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.4e-13 80.1 54 64.8
CsaV3_5G018940 Cucumis sativus L. HOM05D001245 ORTHO05D004475 5.5e-10 68.9 52 65.4
Eucgr.B02095 Eucalyptus grandis HOM05D001245 ORTHO05D004475 4.0e-08 62.8 71 45.1
HPP92_002159 Vanilla planifolia HOM05D001245 ORTHO05D004475 4.4e-07 59.3 42 61.9
Duzib041G0266 Durio zibethinus HOM05D001245 ORTHO05D005230 9.7e-07 58.2 47 51.1


User provided reference genes

Program Settings