Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 8.7e-139 496.9 238 100.0
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 2.3e-75 286.2 237 61.6
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 2.4e-64 249.6 242 53.7
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 1.7e-62 243.4 244 53.3
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 2.3e-62 243.0 240 52.9
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 2.3e-62 243.0 244 53.3
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 2.3e-62 243.0 245 53.1
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 2.3e-62 243.0 244 53.3
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 3.8e-62 242.3 245 53.1
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 5.0e-62 241.9 242 54.5
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 6.6e-62 241.5 243 53.1
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 8.6e-62 241.1 238 53.4
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 1.1e-61 240.7 241 53.1
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 1.5e-61 240.4 241 53.5
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 1.5e-61 240.4 241 52.7
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 1.9e-61 240.0 246 52.0
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 3.3e-61 239.2 243 53.1
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 3.3e-61 239.2 243 53.1
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 4.3e-61 238.8 242 52.5
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 5.6e-61 238.4 242 54.1
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 7.3e-61 238.0 239 53.1
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 7.3e-61 238.0 241 52.3
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 9.5e-61 237.7 239 53.6
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 1.6e-60 236.9 241 52.3
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 2.1e-60 236.5 242 52.5
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 3.6e-60 235.7 241 52.7
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 6.1e-60 235.0 241 51.9
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 6.1e-60 235.0 240 52.5
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 8.0e-60 234.6 241 52.3
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 8.0e-60 234.6 240 52.9
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 8.0e-60 234.6 240 51.7
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 1.0e-59 234.2 241 53.5
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 1.0e-59 234.2 244 52.0
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 1.4e-59 233.8 244 51.2
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.4e-59 233.8 240 52.5
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 1.8e-59 233.4 243 52.7
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 2.3e-59 233.0 245 51.0
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 3.1e-59 232.6 238 52.1
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 4.0e-59 232.3 241 51.9
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 4.0e-59 232.3 241 51.5
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 6.8e-59 231.5 244 51.6
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 8.9e-59 231.1 242 52.1
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 8.9e-59 231.1 241 52.3
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 8.9e-59 231.1 241 52.3
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.2e-58 230.7 241 50.2
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 1.5e-58 230.3 241 51.9
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 2.0e-58 229.9 245 52.2
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 2.0e-58 229.9 243 51.9
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 2.6e-58 229.6 236 55.1
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 3.4e-58 229.2 241 49.8
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.4e-58 229.2 241 49.8
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 4.4e-58 228.8 248 50.8
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 5.8e-58 228.4 243 49.8
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 5.8e-58 228.4 242 51.2
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 5.8e-58 228.4 242 50.4
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 9.8e-58 227.6 242 50.0
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 1.3e-57 227.3 241 51.0
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 1.3e-57 227.3 242 51.2
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 1.7e-57 226.9 243 52.7
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 2.2e-57 226.5 241 52.3
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 2.2e-57 226.5 242 50.0
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 3.7e-57 225.7 241 51.5
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 3.7e-57 225.7 244 52.0
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 4.9e-57 225.3 241 52.3
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 6.4e-57 224.9 238 52.9
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 6.4e-57 224.9 245 49.8
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 6.4e-57 224.9 241 49.0
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 6.4e-57 224.9 238 52.1
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 1.1e-56 224.2 245 51.0
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 1.1e-56 224.2 239 50.6
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.1e-56 224.2 241 50.6
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.4e-56 223.8 243 50.6
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.9e-56 223.4 247 52.6
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 2.4e-56 223.0 242 50.0
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.4e-56 223.0 248 51.2
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.4e-56 223.0 248 51.2
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 4.1e-56 222.2 247 51.8
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.1e-56 222.2 246 50.8
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 4.1e-56 222.2 247 49.8
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 5.4e-56 221.9 242 50.0
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 9.2e-56 221.1 243 51.4
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.2e-55 220.7 248 50.4
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 1.2e-55 220.7 242 50.0
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 3.5e-55 219.2 239 50.6
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 6.0e-55 218.4 284 45.1
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 7.8e-55 218.0 241 49.0
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 7.8e-55 218.0 244 51.2
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 7.8e-55 218.0 243 50.6
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.7e-54 216.9 242 50.8
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 2.3e-54 216.5 204 53.9
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 3.9e-54 215.7 246 48.8
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 3.9e-54 215.7 244 48.0
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 3.9e-54 215.7 244 50.8
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 1.5e-53 213.8 206 53.9
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 2.5e-53 213.0 221 52.9
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 3.3e-53 212.6 244 49.6
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 5.6e-53 211.8 243 50.2
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 7.3e-53 211.5 236 49.6
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 1.2e-52 210.7 298 43.3
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 2.1e-52 209.9 259 45.6
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 4.7e-52 208.8 220 52.3
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 4.7e-52 208.8 243 47.7
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.1e-51 207.6 246 47.2
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 1.1e-51 207.6 248 47.2
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 6.8e-51 204.9 221 51.1
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 8.9e-51 204.5 258 46.5
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 2.6e-50 203.0 221 50.7
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 7.5e-50 201.4 217 51.2
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 1.7e-49 200.3 227 48.5
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 2.2e-49 199.9 287 41.8
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 8.3e-49 198.0 224 49.1
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 1.9e-48 196.8 230 49.1
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 2.7e-47 193.0 266 43.6
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 3.5e-47 192.6 220 47.7
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 4.6e-47 192.2 244 47.5
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 1.3e-46 190.7 167 57.5
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.1e-45 187.6 243 41.6
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.9e-45 186.8 234 44.9
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 3.3e-45 186.0 245 43.7
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 4.3e-45 185.7 206 48.1
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 7.3e-45 184.9 212 48.1
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 2.1e-44 183.3 245 41.2
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 2.1e-44 183.3 237 44.3
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 3.1e-43 179.5 239 41.0
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 6.8e-43 178.3 235 40.4
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 1.5e-42 177.2 225 44.0
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 9.9e-42 174.5 202 45.0
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.3e-41 174.1 242 43.4
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 2.2e-41 173.3 241 42.7
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 7.1e-40 168.3 214 44.9
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 9.5e-37 157.9 156 51.3
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.8e-35 153.7 251 35.5
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 1.8e-35 153.7 311 36.3
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 8.9e-35 151.4 134 56.7
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 2.1e-31 140.2 216 41.7
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 2.7e-31 139.8 173 45.7
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 7.3e-29 131.7 228 35.1
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.5e-26 124.0 244 30.3
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 2.6e-26 123.2 173 42.8
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 1.4e-24 117.5 253 30.4
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 7.1e-24 115.2 82 67.1
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 3.5e-23 112.8 185 31.9
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.5e-21 107.5 159 35.2
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 2.1e-20 103.6 280 28.6
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 1.8e-19 100.5 295 30.5
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.4e-19 100.1 157 36.9
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 2.0e-18 97.1 126 42.1
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 2.0e-18 97.1 70 64.3
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 2.0e-18 97.1 70 64.3
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 3.4e-18 96.3 109 40.4
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 4.5e-18 95.9 70 62.9
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 6.4e-17 92.0 117 37.6
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 1.4e-16 90.9 282 27.3
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 3.2e-16 89.7 110 46.4
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 3.0e-14 83.2 102 45.1
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 3.0e-14 83.2 59 66.1
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 7.4e-13 78.6 246 25.6
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 1.1e-11 74.7 125 40.8
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 2.0e-10 70.5 206 28.2
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 1.7e-09 67.4 72 47.2
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 5.1e-06 55.8 75 41.3


User provided reference genes

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