Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1540.8 778 100.0
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1446.0 779 93.7
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1429.5 780 92.4
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1239.9 795 79.0
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1238.0 782 79.4
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1235.7 780 78.7
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1233.8 796 78.4
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1233.0 782 79.4
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1232.6 789 78.2
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1227.6 787 78.4
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1227.2 782 79.3
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1226.1 782 79.4
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1225.7 787 78.9
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1224.5 789 78.2
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1224.5 786 78.4
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1223.0 773 79.6
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1222.2 789 78.5
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1221.8 789 78.2
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1221.5 791 78.0
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1220.7 800 77.6
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1220.7 790 77.8
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1219.9 784 78.1
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1219.1 788 77.5
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1219.1 787 77.6
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1218.4 788 78.0
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1218.4 782 78.5
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1217.6 782 77.7
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1217.6 796 77.6
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1216.8 783 78.4
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1216.4 787 77.5
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1215.7 784 78.6
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1215.3 786 77.6
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1214.1 785 78.3
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1214.1 791 77.7
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1214.1 782 78.3
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1213.7 782 78.4
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1213.7 794 77.5
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1213.0 787 78.3
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1211.4 784 78.3
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1210.7 781 78.4
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1209.5 792 77.8
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1209.1 788 77.8
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1208.4 800 77.4
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1207.6 782 77.5
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1207.2 794 77.5
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1206.8 792 75.8
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1205.7 796 76.6
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1205.7 794 77.5
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1205.3 792 77.3
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1205.3 784 77.6
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1204.9 786 77.7
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1203.7 784 77.9
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1203.7 832 73.9
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1203.0 788 76.9
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1201.4 794 77.2
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1201.4 798 76.7
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1200.7 799 76.6
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1199.1 792 75.9
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1198.0 787 76.7
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1196.8 791 76.5
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1196.0 789 76.6
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1195.6 827 74.2
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1194.5 790 76.2
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1194.1 789 77.3
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1193.7 713 82.2
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1192.2 787 76.5
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1191.4 786 76.6
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1189.1 798 75.3
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1188.3 789 76.4
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1187.9 789 75.7
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1186.8 790 75.9
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1186.4 786 76.1
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1186.4 786 76.0
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1186.0 793 75.7
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1184.1 791 75.7
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1184.1 791 75.7
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1182.5 796 75.3
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1182.2 793 75.3
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1182.2 784 76.4
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1181.8 790 75.2
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1180.6 786 75.8
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1180.6 805 74.8
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1179.5 828 73.1
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1178.3 783 74.5
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1177.5 796 75.3
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1175.2 785 75.5
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1173.7 780 74.7
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1169.5 779 76.1
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1169.1 790 75.6
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1166.0 820 73.8
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1164.8 788 76.8
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1162.9 718 79.4
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1158.3 796 74.5
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1152.1 722 78.4
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1119.0 789 70.8
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1110.1 791 70.9
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1104.4 770 72.1
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1099.7 767 72.4
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1083.6 946 62.6
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1082.4 818 70.0
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 1.9e-280 969.1 659 75.0
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 1.5e-277 959.5 780 61.5
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 9.1e-270 933.7 773 60.8
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 6.5e-268 927.5 781 60.8
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 2.1e-266 922.5 774 60.5
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 1.1e-264 916.8 769 59.6
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 5.3e-262 907.9 803 59.7
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 4.8e-255 884.8 773 63.1
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 4.5e-253 878.2 462 93.7
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 4.5e-245 851.7 593 74.0
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 1.8e-233 813.1 627 67.8
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.3e-228 797.0 517 75.0
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 1.2e-218 763.8 461 81.1
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 3.3e-211 739.2 461 78.1
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 4.9e-207 725.3 781 47.0
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 7.8e-205 718.0 420 83.1
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 6.6e-204 714.9 421 82.7
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 2.1e-194 683.3 473 74.2
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 3.9e-188 662.5 563 62.7
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 4.6e-181 639.0 398 79.4
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 1.0e-151 541.6 318 82.4
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 4.1e-137 493.0 272 90.8
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 1.5e-134 484.6 356 73.9
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.2e-99 368.6 219 83.6
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 1.0e-95 355.5 199 86.9
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 2.4e-84 317.8 168 90.5
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 1.3e-79 302.0 193 76.2
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 2.5e-33 148.3 78 89.7
C03p39410 Brassica napus HOM05D005231 ORTHO05D006387 2.1e-16 92.0 90 67.8
MCO15G368 Micromonas commoda HOM05D005231 ORTHO05D006387 2.1e-08 65.5 340 24.7
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 2.8e-08 65.1 51 60.8
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 1.8e-07 62.4 51 60.8
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 3.0e-07 61.6 51 56.9


User provided reference genes

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