Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0175500 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 5.8e-310 1066.6 509 100.0
Zm00001eb200940 Zea mays HOM05D006254 ORTHO05D007409 9.3e-215 750.4 508 72.6
Potri.004G137900 Populus trichocarpa HOM05D006254 ORTHO05D007409 2.2e-147 526.6 508 52.4
Cfa002251 Carpinus fangiana HOM05D006254 ORTHO05D007409 6.4e-147 525.0 494 51.2
GSVIVG01000233001 Vitis vinifera HOM05D003183 ORTHO05D007409 2.4e-146 523.1 508 51.2
TAR628G1014 Trochodendron aralioides HOM05D006254 ORTHO05D007409 3.2e-146 522.7 495 50.7
Sc20g0000720 Simmondsia chinensis HOM05D006254 ORTHO05D007409 2.0e-145 520.0 517 50.9
QL10p038598 Quercus lobata HOM05D006254 ORTHO05D007409 4.6e-145 518.8 508 50.8
CiPaw.04G178100 Carya illinoinensis HOM05D006254 ORTHO05D007409 5.0e-144 515.4 485 50.5
Dinv02479 Davidia involucrata HOM05D006254 ORTHO05D007409 6.6e-144 515.0 508 50.4
Prupe.6G059200 Prunus persica HOM05D006254 ORTHO05D007409 8.6e-144 514.6 507 49.3
EL10Ac4g08984 Beta vulgaris HOM05D006254 ORTHO05D007409 8.9e-141 504.6 530 49.1
PSO017G1045 Papaver somniferum HOM05D006254 ORTHO05D007409 1.5e-140 503.8 509 51.1
MELO3C033099.2 Cucumis melo HOM05D006254 ORTHO05D007409 3.4e-140 502.7 505 50.3
MD03G1072300 Malus domestica HOM05D006254 ORTHO05D007409 4.4e-140 502.3 506 49.0
PGR119G0951 Punica granatum HOM05D006254 ORTHO05D007409 4.4e-140 502.3 506 49.0
ECA248G3109 Erigeron canadensis HOM05D006254 ORTHO05D007409 7.5e-140 501.5 507 49.5
Cc07_g20930 Coffea canephora HOM05D006254 ORTHO05D007409 1.3e-139 500.7 514 49.0
Eucgr.I00013 Eucalyptus grandis HOM05D006254 ORTHO05D007409 2.9e-139 499.6 504 47.8
Lalb_Chr12g0202731 Lupinus albus HOM05D006254 ORTHO05D007409 6.4e-139 498.4 507 48.5
Lj4g0026953 Lotus japonicus HOM05D006254 ORTHO05D007409 1.4e-138 497.3 507 49.1
Peaxi162Scf00030g00012 Petunia axillaris HOM05D006254 ORTHO05D007409 1.2e-137 494.2 482 49.6
HanXRQChr01g0017761 Helianthus annuus HOM05D006254 ORTHO05D007409 2.1e-137 493.4 509 49.3
Ca_17588_v3 Cicer arietinum L. HOM05D006254 ORTHO05D007409 3.5e-137 492.7 507 48.9
CsaV3_4G030320 Cucumis sativus L. HOM05D006254 ORTHO05D007409 3.5e-137 492.7 505 49.3
FvH4_3g38370 Fragaria vesca HOM05D006254 ORTHO05D007409 6.0e-137 491.9 522 48.5
Gohir.A05G375400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 1.0e-136 491.1 496 47.2
Sopen03g020950 Solanum pennellii HOM05D006254 ORTHO05D007409 2.3e-136 490.0 508 48.4
TPR.G12754 Trifolium pratense HOM05D006254 ORTHO05D007409 5.1e-136 488.8 496 48.6
FAN21G3787 Fragaria x ananassa HOM05D006254 ORTHO05D007409 6.6e-136 488.4 522 47.7
VMungo0251G0787 Vigna mungo HOM05D006254 ORTHO05D007409 1.1e-135 487.6 509 47.5
TWI31G0260 Tripterygium wilfordii HOM05D006254 ORTHO05D007409 1.9e-135 486.9 476 50.0
Migut.H00776 Erythranthe guttata HOM05D006254 ORTHO05D007409 3.3e-135 486.1 507 47.5
Gorai.012G045500 Gossypium raimondii HOM05D006254 ORTHO05D007409 5.6e-135 485.3 496 47.0
Oeu011007.1 Olea europaea HOM05D006254 ORTHO05D007409 1.2e-134 484.2 508 47.8
MSTRG.23507 Avicennia marina HOM05D006254 ORTHO05D007409 1.6e-134 483.8 507 46.5
CANSAT54G2690 Cannabis sativa HOM05D006254 ORTHO05D007409 4.7e-134 482.3 505 46.9
FAN25G1911 Fragaria x ananassa HOM05D006254 ORTHO05D007409 4.7e-134 482.3 522 47.1
Solyc03g078230.3 Solanum lycopersicum HOM05D006254 ORTHO05D007409 8.1e-134 481.5 508 47.6
Carub.0001s3633 Capsella rubella HOM05D006254 ORTHO05D007409 2.3e-133 479.9 507 47.9
arahy.Tifrunner.gnm1.ann1.9169VS Arachis hypogaea HOM05D006254 ORTHO05D007409 4.0e-133 479.2 495 48.9
THA.LOC104803663 Tarenaya hassleriana HOM05D006254 ORTHO05D007409 6.8e-133 478.4 502 48.0
Medtr8g095410 Medicago truncatula HOM05D006254 ORTHO05D007409 1.5e-132 477.2 508 47.4
arahy.Tifrunner.gnm1.ann1.ZNEY68 Arachis hypogaea HOM05D006254 ORTHO05D007409 2.0e-132 476.9 495 48.5
AT1G47570 Arabidopsis thaliana HOM05D006254 ORTHO05D007409 2.6e-132 476.5 507 47.3
CARHR037200 Cardamine hirsuta HOM05D006254 ORTHO05D007409 2.6e-132 476.5 507 47.1
FAN11G0663 Fragaria x ananassa HOM05D006254 ORTHO05D007409 2.6e-132 476.5 515 47.8
Sp4g18960 Schrenkiella parvula HOM05D006254 ORTHO05D007409 3.4e-132 476.1 508 47.4
BcaB02g09340 Brassica carinata HOM05D006254 ORTHO05D007409 4.4e-132 475.7 508 46.7
Aqoxy5G02669 Aquilegia oxysepala HOM05D006254 ORTHO05D007409 9.9e-132 474.6 508 45.3
BcaB02g09339 Brassica carinata HOM05D006254 ORTHO05D007409 2.2e-131 473.4 508 46.5
Thhalv10016597m.g Eutrema salsugineum HOM05D006254 ORTHO05D007409 3.2e-130 469.5 481 47.8
Lsat_1_v5_gn_1_78401 Lactuca sativa HOM05D006254 ORTHO05D007409 3.9e-128 462.6 473 48.2
BcaC02g11789 Brassica carinata HOM05D006254 ORTHO05D007409 1.5e-127 460.7 509 45.6
C04p11350 Brassica napus HOM05D006254 ORTHO05D007409 1.5e-127 460.7 509 45.6
Manes.12G085200 Manihot esculenta HOM05D006254 ORTHO05D007409 1.2e-126 457.6 381 55.1
A05p09180 Brassica napus HOM05D006254 ORTHO05D007409 8.1e-126 454.9 531 44.1
BolC4t22794H Brassica oleracea HOM05D006254 ORTHO05D007409 1.1e-125 454.5 514 45.1
BolC4t22773H Brassica oleracea HOM05D006254 ORTHO05D007409 1.4e-125 454.1 515 45.0
RcHm_v2.0_Chr5g0068971 Rosa chinensis HOM05D006254 ORTHO05D007409 1.4e-125 454.1 521 46.1
BraA05t19873Z Brassica rapa HOM05D006254 ORTHO05D007409 3.1e-125 453.0 512 44.9
Gohir.D04G040400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 5.2e-125 452.2 496 45.0
CSS0012450 Camellia sinensis var. sinensis HOM05D006254 ORTHO05D007409 5.8e-124 448.7 378 55.3
DCAR_009615 Daucus carota HOM05D006254 ORTHO05D007409 7.1e-122 441.8 465 48.6
Psat7g040840 Pisum sativum HOM05D006254 ORTHO05D007409 3.6e-118 429.5 430 48.1
FAN16G1494 Fragaria x ananassa HOM05D006254 ORTHO05D007409 4.0e-117 426.0 494 45.3
HPP92_016136 Vanilla planifolia HOM05D006254 ORTHO05D007409 6.9e-117 425.2 500 46.2
Rhsim09G0131600 Rhododendron simsii HOM05D006254 ORTHO05D007409 1.1e-114 417.9 380 51.6
Nitab4.5_0012738g0010 Nicotiana tabacum HOM05D006254 ORTHO05D007409 4.6e-113 412.5 592 40.9
Phvul.002G279100 Phaseolus vulgaris HOM05D006254 ORTHO05D007409 6.0e-113 412.1 465 45.8
AUR62036036 Chenopodium quinoa HOM05D006254 ORTHO05D007409 1.0e-112 411.4 579 39.6
Migut.H00777 Erythranthe guttata HOM05D006254 ORTHO05D007409 9.6e-111 404.8 431 47.3
AL1G53850 Arabidopsis lyrata HOM05D006254 ORTHO05D007409 5.3e-109 399.1 375 48.3
Ciclev10024761m.g Citrus clementina HOM05D003183 ORTHO05D003697 1.1e-106 391.3 422 47.4
SGA_v2.0_scaffold54G19570 Striga asiatica HOM05D006254 ORTHO05D007409 3.2e-106 389.8 540 38.9
Ah.04g163200 Amaranthus hybridus HOM05D006254 ORTHO05D007409 9.3e-106 388.3 496 41.7
Thecc.01G235200 Theobroma cacao HOM05D006254 ORTHO05D007409 1.2e-105 387.9 444 45.0
HanXRQChr01g0017751 Helianthus annuus HOM05D006254 ORTHO05D007409 1.6e-105 387.5 480 42.3
CDE06G2483 Ceratophyllum demersum HOM05D006254 ORTHO05D007409 3.0e-104 383.3 446 45.3
Sed0010974 Sechium edule HOM05D006254 ORTHO05D007409 1.6e-102 377.5 424 46.9
Glyma.05G198100 Glycine max HOM05D006254 ORTHO05D007409 5.8e-100 369.0 442 43.9
Atru.chr4.972 Acer truncatum HOM05D006254 ORTHO05D007409 2.7e-97 360.1 391 47.8
Sabra04G0089300 Salix brachista HOM05D006254 ORTHO05D007409 1.0e-96 358.2 580 38.8
RcHm_v2.0_Chr2g0157071 Rosa chinensis HOM05D006254 ORTHO05D007409 5.6e-95 352.4 411 46.0
MD11G1077300 Malus domestica HOM05D006254 ORTHO05D007409 2.0e-84 317.4 403 41.7
MD11G1078600 Malus domestica HOM05D006254 ORTHO05D007409 1.8e-80 304.3 460 37.4
Nitab4.5_0000004g0230 Nicotiana tabacum HOM05D006254 ORTHO05D007409 2.0e-79 300.8 508 37.0
vmacro10394 Vaccinium macrocarpon HOM05D006254 ORTHO05D007409 2.0e-76 290.8 319 44.5
AUR62004819 Chenopodium quinoa HOM05D006254 ORTHO05D007409 2.5e-74 283.9 457 38.3
Hma1.2p1_0057F.1_g032170 Hydrangea macrophylla HOM05D006254 ORTHO05D007409 1.8e-72 277.7 196 58.2
Aa31LG5G9250 Aethionema arabicum HOM05D006254 ORTHO05D007409 3.3e-71 273.5 293 43.3
Actinidia34771 Actinidia chinensis HOM05D000969 ORTHO05D000899 5.9e-68 262.7 245 52.2
Hund06901 Selenicereus undatus HOM05D006254 ORTHO05D007409 2.9e-67 260.4 287 43.6
Mapoly0003s0196 Marchantia polymorpha HOM05D006254 ORTHO05D007409 2.7e-65 253.8 524 32.4
MD00G1120300 Malus domestica HOM05D006254 ORTHO05D007409 4.4e-63 246.5 290 40.7
unitig_65.g29879 Utricularia gibba HOM05D006254 ORTHO05D007409 9.7e-63 245.4 497 32.4
Cpa.g.sc138.23 Carica papaya HOM05D006254 ORTHO05D007409 3.8e-59 233.4 167 57.5
AagrBONN_evm.TU.Sc2ySwM_117.2849 Anthoceros agrestis HOM05D006254 ORTHO05D007409 1.2e-57 228.4 439 31.2
Haze_25433 Corylus avellana HOM05D006254 ORTHO05D007409 5.2e-56 223.0 278 44.2
Haze_25436 Corylus avellana HOM05D006254 ORTHO05D007409 1.5e-55 221.5 214 51.4
unitig_62.g23450 Utricularia gibba HOM05D006254 ORTHO05D007409 1.3e-54 218.4 538 30.1
Lj4g0022315 Lotus japonicus HOM05D006254 ORTHO05D007409 3.5e-52 210.3 229 50.2
MD00G1120800 Malus domestica HOM05D006254 ORTHO05D007409 5.0e-51 206.5 176 51.1
MD11G1077500 Malus domestica HOM05D006254 ORTHO05D007409 1.5e-50 204.9 326 37.4
MD11G1078400 Malus domestica HOM05D006254 ORTHO05D007409 4.2e-50 203.4 176 50.6
Migut.H00787 Erythranthe guttata HOM05D006254 ORTHO05D007409 2.0e-47 194.5 237 47.3
AagrBONN_evm.TU.Sc2ySwM_228.4097 Anthoceros agrestis HOM05D006254 ORTHO05D007409 3.3e-42 177.2 341 30.2
Os08g0123300 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 4.7e-41 173.3 101 87.1
SEGI_09568 Sequoiadendron giganteum HOM05D006254 ORTHO05D007409 4.0e-40 170.2 269 35.7
ATR0584G026 Amborella trichopoda HOM05D006254 ORTHO05D007409 3.5e-36 157.1 180 42.8
CBR_g38543 Chara braunii HOM05D006254 ORTHO05D007409 2.5e-34 151.0 447 26.8
Haze_25432 Corylus avellana HOM05D006254 ORTHO05D007409 1.5e-31 141.7 251 32.3
Haze_25431 Corylus avellana HOM05D006254 ORTHO05D007409 1.7e-30 138.3 173 41.0
RcHm_v2.0_Chr2g0157061 Rosa chinensis HOM05D006254 ORTHO05D007409 2.0e-28 131.3 92 60.9
Duzib264G1273 Durio zibethinus HOM05D006254 ORTHO05D007409 5.0e-27 126.7 78 64.1
BolC4t22792H Brassica oleracea HOM05D006254 ORTHO05D007409 1.5e-23 115.2 139 46.8
Nn1g08418 Nelumbo nucifera HOM05D006254 ORTHO05D007409 1.3e-22 112.1 86 57.0
MD11G1077800 Malus domestica HOM05D006254 ORTHO05D007409 1.3e-19 102.1 68 58.8
GSVIVG01038034001 Vitis vinifera HOM05D001605 ORTHO05D007409 3.9e-19 100.5 64 62.5
AagrBONN_evm.TU.Sc2ySwM_228.4094 Anthoceros agrestis HOM05D006254 ORTHO05D007409 1.1e-16 92.4 218 28.4
AagrBONN_evm.TU.Sc2ySwM_340.558 Anthoceros agrestis HOM05D002405 ORTHO05D002483 1.1e-16 92.4 206 28.2
Actinidia38917 Actinidia chinensis HOM05D006254 ORTHO05D007409 2.3e-16 91.3 140 39.3
MD11G1077000 Malus domestica HOM05D006254 ORTHO05D007409 3.1e-16 90.9 108 44.4
Glyma.08G005450 Glycine max HOM05D006254 ORTHO05D007409 4.6e-12 77.0 92 46.7
arahy.Tifrunner.gnm1.ann1.SX6F5A Arachis hypogaea HOM05D006254 ORTHO05D007409 5.1e-11 73.6 87 43.7
HanXRQChr02g0035161 Helianthus annuus HOM05D006254 ORTHO05D007409 1.9e-10 71.6 113 37.2
ClCG04G002460 Citrullus lanatus HOM05D006254 ORTHO05D007409 2.5e-10 71.2 114 40.4
Actinidia38918 Actinidia chinensis HOM05D006254 ORTHO05D007409 4.7e-09 67.0 42 61.9
PSO170G1462 Papaver somniferum HOM05D006254 ORTHO05D007409 4.0e-08 63.9 115 40.9
AL1G53840 Arabidopsis lyrata HOM05D003114 ORTHO05D003519 6.4e-06 56.6 123 36.6
BolC4t22791H Brassica oleracea HOM05D006254 ORTHO05D007409 6.4e-06 56.6 63 34.9


User provided reference genes

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