Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0169100 Oryza sativa ssp. japonica HOM05D006510 ORTHO05D008171 0.0e+00 1636.7 863 100.0
Zm00001eb297610 Zea mays HOM05D006510 ORTHO05D008171 0.0e+00 1129.0 749 78.2
TAR636G1540 Trochodendron aralioides HOM05D006510 ORTHO05D008171 1.5e-260 903.3 874 55.8
Nn8g40464 Nelumbo nucifera HOM05D006510 ORTHO05D008171 5.9e-254 881.3 879 55.6
Ciclev10014241m.g Citrus clementina HOM05D006510 ORTHO05D008171 2.8e-251 872.5 871 56.0
MBI16_g39629_MAGBIO Magnolia biondii HOM05D006510 ORTHO05D008171 3.6e-251 872.1 875 54.1
TWI38G0436 Tripterygium wilfordii HOM05D006510 ORTHO05D008171 1.8e-250 869.8 868 56.1
Rhsim04G0074900 Rhododendron simsii HOM05D006510 ORTHO05D008171 3.0e-250 869.0 869 52.9
Thecc.01G152700 Theobroma cacao HOM05D006510 ORTHO05D008171 5.2e-250 868.2 872 54.0
QL08p042146 Quercus lobata HOM05D006510 ORTHO05D008171 8.9e-250 867.5 870 53.2
HPP92_014652 Vanilla planifolia HOM05D006510 ORTHO05D008171 1.3e-248 863.6 856 54.9
PSO782G3259 Papaver somniferum HOM05D006510 ORTHO05D008171 3.7e-248 862.1 868 53.8
COL.COLO4_33599 Corchorus olitorius HOM05D006510 ORTHO05D008171 4.9e-248 861.7 866 53.7
Cfa021921 Carpinus fangiana HOM05D006510 ORTHO05D008171 9.2e-247 857.4 868 53.2
Lj3g0027149 Lotus japonicus HOM05D006510 ORTHO05D008171 1.6e-246 856.7 867 52.6
Potri.014G142900 Populus trichocarpa HOM05D006510 ORTHO05D008171 3.5e-246 855.5 868 54.3
Hma1.2p1_0178F.1_g078710 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 1.7e-245 853.2 870 53.9
Psat7g163800 Pisum sativum HOM05D006510 ORTHO05D008171 2.9e-245 852.4 865 54.5
TPR.G16532 Trifolium pratense HOM05D006510 ORTHO05D008171 2.9e-245 852.4 864 52.4
TPR.G13821 Trifolium pratense HOM05D006510 ORTHO05D008171 2.5e-244 849.4 865 52.1
CANSAT78G1126 Cannabis sativa HOM05D006510 ORTHO05D008171 3.3e-244 849.0 872 53.2
PSO478G4451 Papaver somniferum HOM05D006510 ORTHO05D008171 3.3e-244 849.0 874 54.2
Prupe.3G115700 Prunus persica HOM05D006510 ORTHO05D008171 7.3e-244 847.8 871 54.5
CSS0034147 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 1.6e-243 846.7 872 52.6
CSS0039339 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 2.1e-243 846.3 872 52.5
Glyma.06G276100 Glycine max HOM05D006510 ORTHO05D008171 2.1e-243 846.3 866 52.9
Cc05_g08450 Coffea canephora HOM05D006510 ORTHO05D008171 2.8e-243 845.9 865 54.5
DCAR_013276 Daucus carota HOM05D006510 ORTHO05D008171 3.6e-243 845.5 879 53.7
CAN.G1716.4 Capsicum annuum HOM05D006510 ORTHO05D008171 4.7e-243 845.1 867 52.5
Glyma.12G129300 Glycine max HOM05D006510 ORTHO05D008171 6.1e-243 844.7 867 52.9
Lalb_Chr24g0400131 Lupinus albus HOM05D006510 ORTHO05D008171 1.0e-242 844.0 867 53.1
MD11G1004500 Malus domestica HOM05D006510 ORTHO05D008171 1.0e-242 844.0 875 54.1
Duzib147G0397 Durio zibethinus HOM05D006510 ORTHO05D008171 1.4e-242 843.6 868 53.2
Phvul.011G128400 Phaseolus vulgaris HOM05D006510 ORTHO05D008171 4.0e-242 842.0 865 52.9
PGSC0003DMG400015368 Solanum tuberosum HOM05D006510 ORTHO05D008171 1.2e-241 840.5 864 52.0
Ca_18866_v3 Cicer arietinum L. HOM05D006510 ORTHO05D008171 1.5e-241 840.1 864 53.4
Aqoxy5G02856 Aquilegia oxysepala HOM05D006510 ORTHO05D008171 5.8e-241 838.2 879 52.9
CiPaw.03G194300 Carya illinoinensis HOM05D006510 ORTHO05D008171 7.5e-241 837.8 868 52.6
Lj8C100T15 Lonicera japonica HOM05D006510 ORTHO05D008171 7.5e-241 837.8 884 52.0
RcHm_v2.0_Chr2g0130091 Rosa chinensis HOM05D006510 ORTHO05D008171 1.3e-240 837.0 872 53.3
arahy.Tifrunner.gnm1.ann1.J1H900 Arachis hypogaea HOM05D006510 ORTHO05D008171 1.7e-240 836.6 866 51.8
GSVIVG01020726001 Vitis vinifera HOM05D006510 ORTHO05D008171 1.7e-240 836.6 869 52.5
arahy.Tifrunner.gnm1.ann1.JGR80D Arachis hypogaea HOM05D006510 ORTHO05D008171 2.2e-240 836.3 865 51.8
FAN02G4134 Fragaria x ananassa HOM05D006510 ORTHO05D008171 2.9e-240 835.9 868 53.7
FAN05G5099 Fragaria x ananassa HOM05D006510 ORTHO05D008171 8.3e-240 834.3 868 53.5
PGR142G2695 Punica granatum HOM05D006510 ORTHO05D008171 1.1e-239 833.9 874 52.2
Atru.chr6.2773 Acer truncatum HOM05D006510 ORTHO05D008171 1.9e-239 833.2 815 55.2
Solyc12g013950.2 Solanum lycopersicum HOM05D006510 ORTHO05D008171 3.2e-239 832.4 861 51.8
Sopen12g005700 Solanum pennellii HOM05D006510 ORTHO05D008171 3.2e-239 832.4 864 51.4
Eucgr.K01140 Eucalyptus grandis HOM05D006510 ORTHO05D008171 4.6e-238 828.6 870 52.4
FAN14G1437 Fragaria x ananassa HOM05D006510 ORTHO05D008171 1.0e-237 827.4 869 53.0
FvH4_6g27600 Fragaria vesca HOM05D006510 ORTHO05D008171 2.3e-237 826.2 869 52.9
Peaxi162Scf00229g01116 Petunia axillaris HOM05D006510 ORTHO05D008171 1.5e-236 823.5 859 53.1
Gohir.A09G003200 Gossypium hirsutum HOM05D006510 ORTHO05D008171 1.2e-235 820.5 868 53.3
Gorai.006G003700 Gossypium raimondii HOM05D006510 ORTHO05D008171 1.2e-235 820.5 868 53.1
ATR0796G261 Amborella trichopoda HOM05D006510 ORTHO05D008171 3.6e-235 818.9 851 52.8
Migut.M00272 Erythranthe guttata HOM05D006510 ORTHO05D008171 3.6e-235 818.9 865 52.1
Nitab4.5_0002027g0190 Nicotiana tabacum HOM05D006510 ORTHO05D008171 1.8e-234 816.6 850 52.6
Medtr4g080110 Medicago truncatula HOM05D006510 ORTHO05D008171 1.7e-232 810.1 867 50.5
THA.LOC104823853 Tarenaya hassleriana HOM05D006510 ORTHO05D008171 2.2e-232 809.7 877 51.1
Haze_13408 Corylus avellana HOM05D006510 ORTHO05D008171 9.2e-231 804.3 838 52.7
CsaV3_1G037360 Cucumis sativus L. HOM05D006510 ORTHO05D008171 2.1e-230 803.1 870 50.3
Manes.07G057100 Manihot esculenta HOM05D006510 ORTHO05D008171 1.3e-229 800.4 870 52.2
MELO3C002806.2 Cucumis melo HOM05D006510 ORTHO05D008171 3.9e-229 798.9 871 50.1
CARHR137800 Cardamine hirsuta HOM05D006510 ORTHO05D008171 1.5e-228 797.0 871 49.9
ClCG07G002720 Citrullus lanatus HOM05D006510 ORTHO05D008171 3.3e-228 795.8 878 49.9
Actinidia03942 Actinidia chinensis HOM05D006510 ORTHO05D008171 1.2e-227 793.9 831 52.6
Thhalv10016247m.g Eutrema salsugineum HOM05D006510 ORTHO05D008171 2.8e-227 792.7 870 51.0
Sabra14G0108000 Salix brachista HOM05D006510 ORTHO05D008171 1.4e-226 790.4 868 51.3
Sp4g24850 Schrenkiella parvula HOM05D006510 ORTHO05D008171 1.4e-226 790.4 870 50.5
AT2G42700 Arabidopsis thaliana HOM05D006510 ORTHO05D008171 8.9e-226 787.7 870 49.7
A05p03350 Brassica napus HOM05D006510 ORTHO05D008171 2.6e-225 786.2 869 51.2
BraA05t19323Z Brassica rapa HOM05D006510 ORTHO05D008171 2.6e-225 786.2 871 51.2
Carub.0004s2514 Capsella rubella HOM05D006510 ORTHO05D008171 9.9e-225 784.3 871 49.7
C04p03920 Brassica napus HOM05D006510 ORTHO05D008171 1.7e-224 783.5 871 50.6
ECA248G1772 Erigeron canadensis HOM05D006510 ORTHO05D008171 2.2e-224 783.1 868 49.4
AL4G41260 Arabidopsis lyrata HOM05D006510 ORTHO05D008171 2.9e-224 782.7 871 49.6
Sed0011358 Sechium edule HOM05D006510 ORTHO05D008171 6.4e-224 781.6 869 49.4
Nitab4.5_0006142g0020 Nicotiana tabacum HOM05D006510 ORTHO05D008171 6.6e-221 771.5 850 50.5
EL10Ac9g20963 Beta vulgaris HOM05D006510 ORTHO05D008171 2.5e-220 769.6 856 49.9
AUR62041733 Chenopodium quinoa HOM05D006510 ORTHO05D008171 3.6e-219 765.8 849 50.2
Aa31LG1G24480 Aethionema arabicum HOM05D006510 ORTHO05D008171 6.2e-219 765.0 913 48.1
Gohir.D09G003000 Gossypium hirsutum HOM05D006510 ORTHO05D008171 7.6e-217 758.1 868 50.7
Sc12g0003550 Simmondsia chinensis HOM05D006510 ORTHO05D008171 2.9e-216 756.1 806 50.2
AUR62029599 Chenopodium quinoa HOM05D006510 ORTHO05D008171 4.2e-215 752.3 855 49.2
Oeu001793.2 Olea europaea HOM05D006510 ORTHO05D008171 4.3e-212 742.3 804 51.1
CDE04G2642 Ceratophyllum demersum HOM05D006510 ORTHO05D008171 1.6e-211 740.3 875 47.1
BolC4t22028H Brassica oleracea HOM05D006510 ORTHO05D008171 7.6e-209 731.5 832 50.2
VMungo1127G1883 Vigna mungo HOM05D006510 ORTHO05D008171 2.9e-200 703.0 752 51.7
Lsat_1_v5_gn_4_64481 Lactuca sativa HOM05D006510 ORTHO05D008171 3.8e-200 702.6 864 47.1
SGA_v2.0_scaffold9G04837 Striga asiatica HOM05D006510 ORTHO05D008171 1.8e-197 693.7 872 46.7
Ah.01g004980 Amaranthus hybridus HOM05D006510 ORTHO05D008171 3.9e-197 692.6 809 48.9
Hma1.2p1_0178F.1_g078700 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 8.7e-197 691.4 805 50.1
unitig_46.g18272 Utricularia gibba HOM05D006510 ORTHO05D008171 1.6e-195 687.2 869 45.8
FAN09G2536 Fragaria x ananassa HOM05D006510 ORTHO05D008171 1.2e-190 671.0 749 49.8
arahy.Tifrunner.gnm1.ann1.H5IL2E Arachis hypogaea HOM05D006510 ORTHO05D008171 5.9e-177 625.5 646 50.8
Dinv07684 Davidia involucrata HOM05D006510 ORTHO05D008171 3.6e-158 563.1 682 47.5
vmacro09212 Vaccinium macrocarpon HOM05D006510 ORTHO05D008171 4.7e-158 562.8 810 42.8
SEGI_27047 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 1.3e-147 528.1 751 42.7
TAR629G2876 Trochodendron aralioides HOM05D006510 ORTHO05D008171 4.4e-140 503.1 520 52.7
Pp3c9_21860 Physcomitrium patens HOM05D006510 ORTHO05D008171 2.3e-136 490.7 870 36.8
Mapoly0047s0091 Marchantia polymorpha HOM05D006510 ORTHO05D008171 1.2e-132 478.4 839 36.8
SMO164G0050 Selaginella moellendorffii HOM05D006510 ORTHO05D008171 7.3e-119 432.6 852 36.2
SalBow7G4578 Salvia bowleyana HOM05D006510 ORTHO05D008171 1.5e-111 408.3 419 53.7
CBR_g35046 Chara braunii HOM05D006510 ORTHO05D008171 5.1e-88 330.1 996 30.0
Cpa.g.sc52.162 Carica papaya HOM05D006510 ORTHO05D008171 1.1e-77 295.8 310 51.9
Cpa.g.sc52.161 Carica papaya HOM05D006510 ORTHO05D008171 9.7e-39 166.4 190 59.5
Dinv07685 Davidia involucrata HOM05D006510 ORTHO05D008171 1.7e-22 112.5 101 60.4
TAR629G0105 Trochodendron aralioides HOM05D006510 ORTHO05D008171 3.7e-22 111.3 94 57.4
Cre11.g479200 Chlamydomonas reinhardtii HOM05D006510 ORTHO05D008171 7.7e-20 103.6 923 21.1
VMungo1127G1894 Vigna mungo HOM05D006510 ORTHO05D008171 1.4e-16 92.8 97 48.5
MCO09G591 Micromonas commoda HOM05D006510 ORTHO05D008171 3.4e-15 88.2 583 22.5
Cpa.g.c45723 Carica papaya HOM05D006510 ORTHO05D008171 3.7e-14 84.7 64 64.1
unitig_46.g18270 Utricularia gibba HOM05D006510 ORTHO05D008171 8.3e-14 83.6 63 65.1
PRCOL_00003865 Prasinoderma coloniale HOM05D006510 ORTHO05D008171 1.2e-12 79.7 593 22.8
HanXRQChr09g0251831 Helianthus annuus HOM05D006510 ORTHO05D008171 1.9e-10 72.4 62 54.8
Solyc01g011190.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 7.3e-10 70.5 57 61.4
Solyc01g011180.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 9.5e-10 70.1 57 61.4
Hund07777 Selenicereus undatus HOM05D006510 ORTHO05D008171 1.6e-09 69.3 63 55.6
SEGI_32298 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 2.1e-09 68.9 52 57.7
arahy.Tifrunner.gnm1.ann1.JPYC3C Arachis hypogaea HOM05D006510 ORTHO05D008171 8.0e-09 67.0 50 68.0
BraA03t11594Z Brassica rapa HOM05D006510 ORTHO05D008171 3.7e-06 58.2 100 41.0


User provided reference genes

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