Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0166100 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 5.0e-218 760.8 370 100.0
Os10g0155300 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.5e-60 237.7 383 39.9
Os02g0249700 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 3.8e-48 196.4 380 37.4
Zm00001eb346560 Zea mays HOM05D008694 ORTHO05D010635 7.9e-46 188.7 372 36.8
Os10g0137000 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.5e-41 174.5 382 33.2
Os05g0320100 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 2.6e-41 173.7 386 33.9
Os10g0136200 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 9.9e-41 171.8 362 35.6
Os10g0137700 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 6.7e-37 159.1 383 33.9
Os10g0145200 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.3e-35 154.8 380 30.8
Zm00001eb285670 Zea mays HOM05D008694 ORTHO05D010635 2.8e-35 153.7 388 32.5
Os10g0142500 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 5.1e-29 132.9 369 28.2
Os10g0145000 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 8.2e-27 125.6 376 29.0
Os10g0145100 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 2.9e-24 117.1 383 26.6
Os07g0120400 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 5.5e-23 112.8 362 28.5
Os07g0122900 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.0e-21 108.6 370 28.4
Os10g0188000 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.0e-21 108.6 211 39.3
Os07g0123000 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 5.1e-21 106.3 376 27.7
Zm00001eb298860 Zea mays HOM05D008694 ORTHO05D010635 6.7e-21 105.9 385 27.8
Os07g0120200 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 2.5e-20 104.0 375 27.2
Os10g0139300 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 2.5e-20 104.0 404 26.5
Os10g0123200 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 4.3e-20 103.2 167 42.5
Zm00001eb332480 Zea mays HOM05D008694 ORTHO05D010635 4.3e-20 103.2 361 29.9
Os10g0138000 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 7.4e-20 102.4 147 44.2
Os01g0557400 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 2.8e-19 100.5 374 29.1
Os10g0144800 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.8e-18 97.8 398 26.1
Zm00001eb028860 Zea mays HOM05D008694 ORTHO05D010635 2.5e-15 87.4 383 28.2
Os10g0136150 Oryza sativa ssp. japonica HOM05D008243 ORTHO05D017094 2.7e-14 84.0 200 32.0
Os07g0421000 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.8e-13 81.3 380 27.1
Zm00001eb043870 Zea mays HOM05D008694 ORTHO05D010635 3.0e-13 80.5 375 26.4
Os02g0288000 Oryza sativa ssp. japonica HOM05D017235 ORTHO05D010635 3.3e-12 77.0 397 27.5
Os02g0288925 Oryza sativa ssp. japonica HOM05D017235 ORTHO05D036983 4.3e-12 76.6 402 26.9
Psat0s3161g0280 Pisum sativum HOM05D007779 ORTHO05D009863 5.7e-12 76.3 394 25.9
Os10g0138300 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.3e-11 75.1 255 25.5
Ca_09436_v3 Cicer arietinum L. HOM05D007779 ORTHO05D009863 1.7e-11 74.7 394 25.1
Os10g0136900 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 2.8e-11 73.9 197 29.4
Zm00001eb043880 Zea mays HOM05D008694 ORTHO05D010635 4.8e-11 73.2 383 27.2
Duzib128G1279 Durio zibethinus HOM05D000664 ORTHO05D000491 6.3e-11 72.8 273 24.2
arahy.Tifrunner.gnm1.ann1.C2UZEY Arachis hypogaea HOM05D007779 ORTHO05D009863 1.1e-10 72.0 392 23.5
arahy.Tifrunner.gnm1.ann1.DL8VF6 Arachis hypogaea HOM05D007779 ORTHO05D009863 1.1e-10 72.0 392 23.7
Os08g0299700 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.1e-10 72.0 187 35.8
CDE04G2855 Ceratophyllum demersum HOM05D000664 ORTHO05D000491 1.2e-09 68.6 245 27.8
Duzib177G0763 Durio zibethinus HOM05D007779 ORTHO05D009863 1.2e-09 68.6 343 25.7
Zm00001eb042100 Zea mays HOM05D028964 ORTHO05D010635 1.2e-09 68.6 253 30.0
TAR626G1239 Trochodendron aralioides HOM05D000664 ORTHO05D000491 1.5e-09 68.2 248 25.4
Zm00001eb299160 Zea mays HOM05D008694 ORTHO05D010635 1.5e-09 68.2 111 38.7
Os02g0287900 Oryza sativa ssp. japonica HOM05D017235 ORTHO05D010635 2.6e-09 67.4 400 26.2
Thecc.06G054800 Theobroma cacao HOM05D000664 ORTHO05D000491 2.6e-09 67.4 243 25.1
CiPaw.01G207700 Carya illinoinensis HOM05D000664 ORTHO05D000491 3.4e-09 67.0 310 22.6
Os01g0509900 Oryza sativa ssp. japonica HOM05D010111 ORTHO05D010635 4.5e-09 66.6 373 25.5
PSO339G4005 Papaver somniferum HOM05D000007 ORTHO05D000676 4.5e-09 66.6 313 24.0
Lsat_1_v5_gn_0_16480 Lactuca sativa HOM05D008898 ORTHO05D001155 7.7e-09 65.9 291 25.4
Thecc.05G237900 Theobroma cacao HOM05D000664 ORTHO05D000491 7.7e-09 65.9 256 25.4
Nitab4.5_0011101g0010 Nicotiana tabacum HOM05D000664 ORTHO05D000491 1.3e-08 65.1 237 30.0
Manes.14G038100 Manihot esculenta HOM05D000664 ORTHO05D000491 1.7e-08 64.7 287 24.0
Nitab4.5_0000413g0120 Nicotiana tabacum HOM05D000664 ORTHO05D000491 1.7e-08 64.7 235 29.4
Thecc.06G054900 Theobroma cacao HOM05D000664 ORTHO05D000491 1.7e-08 64.7 245 22.9
COL.COLO4_19852 Corchorus olitorius HOM05D002420 ORTHO05D002422 2.2e-08 64.3 293 23.9
QL08p054586 Quercus lobata HOM05D002420 ORTHO05D002422 2.9e-08 63.9 415 21.7
CDE06G0907 Ceratophyllum demersum HOM05D000855 ORTHO05D000491 3.8e-08 63.5 367 22.3
Os10g0139600 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 3.8e-08 63.5 48 68.8
CiPaw.15G154900 Carya illinoinensis HOM05D000664 ORTHO05D000491 5.0e-08 63.2 242 25.6
Actinidia25575 Actinidia chinensis HOM05D000007 ORTHO05D000039 6.5e-08 62.8 250 26.0
Glyma.19G246800 Glycine max HOM05D007779 ORTHO05D009863 6.5e-08 62.8 401 24.2
Gohir.A11G278000 Gossypium hirsutum HOM05D000664 ORTHO05D000491 1.1e-07 62.0 263 23.2
Gorai.007G311900 Gossypium raimondii HOM05D000664 ORTHO05D000491 1.1e-07 62.0 250 23.2
Rhsim03G0162000 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.1e-07 62.0 259 27.4
GSVIVG01026445001 Vitis vinifera HOM05D002420 ORTHO05D002422 1.1e-07 62.0 291 22.7
Cpa.g.sc483.2 Carica papaya HOM05D000007 ORTHO05D000521 1.4e-07 61.6 267 25.1
Thecc.05G277100 Theobroma cacao HOM05D007779 ORTHO05D009863 1.4e-07 61.6 321 23.7
Zm00001eb146000 Zea mays HOM05D000664 ORTHO05D000491 1.4e-07 61.6 366 23.0
FAN07G0903 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.9e-07 61.2 242 27.3
Thecc.05G238200 Theobroma cacao HOM05D000664 ORTHO05D000491 1.9e-07 61.2 234 25.6
vmacro20419 Vaccinium macrocarpon HOM05D002420 ORTHO05D002422 1.9e-07 61.2 248 24.6
Actinidia31674 Actinidia chinensis HOM05D000664 ORTHO05D000491 2.5e-07 60.8 264 26.5
Hund14712 Selenicereus undatus HOM05D000007 ORTHO05D000039 2.5e-07 60.8 298 23.8
Glyma.18G274800 Glycine max HOM05D000007 ORTHO05D000017 3.2e-07 60.5 245 26.9
TPR.G6996 Trifolium pratense HOM05D007779 ORTHO05D009863 3.2e-07 60.5 400 24.0
Dinv26463 Davidia involucrata HOM05D000664 ORTHO05D000491 5.5e-07 59.7 315 23.8
Duzib177G0141 Durio zibethinus HOM05D000664 ORTHO05D000491 5.5e-07 59.7 246 23.6
Gohir.A08G217100 Gossypium hirsutum HOM05D007779 ORTHO05D009863 5.5e-07 59.7 321 23.1
Potri.005G043500 Populus trichocarpa HOM05D000664 ORTHO05D000491 5.5e-07 59.7 288 26.7
Prupe.1G066300 Prunus persica HOM05D000664 ORTHO05D000491 5.5e-07 59.7 245 27.8
VMungo0540G1456 Vigna mungo HOM05D007779 ORTHO05D009863 5.5e-07 59.7 405 24.4
Medtr7g115440 Medicago truncatula HOM05D007779 ORTHO05D009863 7.2e-07 59.3 400 23.2
Os05g0172500 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 7.2e-07 59.3 212 31.6
Os02g0294100 Oryza sativa ssp. japonica HOM05D017235 ORTHO05D036983 9.4e-07 58.9 386 25.1
Os09g0324200 Oryza sativa ssp. japonica HOM05D015368 ORTHO05D023030 9.4e-07 58.9 336 24.1
Nitab4.5_0000413g0140 Nicotiana tabacum HOM05D000664 ORTHO05D000491 1.2e-06 58.5 232 26.3
QL02p015450 Quercus lobata HOM05D007494 ORTHO05D009621 1.2e-06 58.5 233 26.2
Sabra05G0040400 Salix brachista HOM05D000664 ORTHO05D000491 1.2e-06 58.5 287 26.5
Duzib168G0815 Durio zibethinus HOM05D002420 ORTHO05D002422 1.6e-06 58.2 290 22.4
FAN02G1298 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.6e-06 58.2 268 26.5
Os10g0138600 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.6e-06 58.2 262 28.6
Phvul.006G104000 Phaseolus vulgaris HOM05D007779 ORTHO05D009863 1.6e-06 58.2 259 26.6
Nn4g25094 Nelumbo nucifera HOM05D002420 ORTHO05D002422 2.1e-06 57.8 314 23.2
Os10g0391200 Oryza sativa ssp. japonica HOM05D011488 ORTHO05D013340 2.1e-06 57.8 301 26.2
TAR371G0430 Trochodendron aralioides HOM05D000007 ORTHO05D007252 2.1e-06 57.8 245 27.8
TAR626G1797 Trochodendron aralioides HOM05D000664 ORTHO05D000491 2.1e-06 57.8 284 25.4
Ciclev10006867m.g Citrus clementina HOM05D000664 ORTHO05D000491 2.7e-06 57.4 248 25.4
Lj8C33T14 Lonicera japonica HOM05D000664 ORTHO05D000491 2.7e-06 57.4 258 24.0
Nitab4.5_0013676g0010 Nicotiana tabacum HOM05D000664 ORTHO05D000491 2.7e-06 57.4 232 25.9
RcHm_v2.0_Chr5g0030151 Rosa chinensis HOM05D000007 ORTHO05D000017 2.7e-06 57.4 244 26.6
Gorai.004G248800 Gossypium raimondii HOM05D007779 ORTHO05D009863 3.6e-06 57.0 321 22.7
QL08p055477 Quercus lobata HOM05D002420 ORTHO05D002422 3.6e-06 57.0 413 22.5
PGSC0003DMG400015473 Solanum tuberosum HOM05D002420 ORTHO05D002422 3.6e-06 57.0 228 25.0
Aqoxy4G00563 Aquilegia oxysepala HOM05D000007 ORTHO05D000521 4.7e-06 56.6 264 24.6
Os02g0287800 Oryza sativa ssp. japonica HOM05D017235 ORTHO05D010635 4.7e-06 56.6 84 47.6
Thecc.09G282200 Theobroma cacao HOM05D002420 ORTHO05D002422 4.7e-06 56.6 293 21.8
GSVIVG01017506001 Vitis vinifera HOM05D000664 ORTHO05D000491 4.7e-06 56.6 325 22.8
Zm00001eb301850 Zea mays HOM05D009359 ORTHO05D011905 4.7e-06 56.6 254 26.0
Zm00001eb366400 Zea mays HOM05D000664 ORTHO05D000491 4.7e-06 56.6 334 22.8
Cc00_g00720 Coffea canephora HOM05D000664 ORTHO05D000491 6.1e-06 56.2 263 22.8
Gohir.D08G234100 Gossypium hirsutum HOM05D007779 ORTHO05D009863 6.1e-06 56.2 321 22.7
Os05g0177100 Oryza sativa ssp. japonica HOM05D009359 ORTHO05D011905 6.1e-06 56.2 367 24.3
TAR371G0292 Trochodendron aralioides HOM05D000007 ORTHO05D007252 6.1e-06 56.2 250 26.8
Zm00001eb301870 Zea mays HOM05D009359 ORTHO05D011905 6.1e-06 56.2 269 26.8
Cc00_g00730 Coffea canephora HOM05D000664 ORTHO05D000491 7.9e-06 55.8 262 24.4
PGR044G0383 Punica granatum HOM05D000664 ORTHO05D000491 7.9e-06 55.8 244 27.5
QL08p054647 Quercus lobata HOM05D002420 ORTHO05D002422 7.9e-06 55.8 290 23.4
QL08p055137 Quercus lobata HOM05D002420 ORTHO05D002422 7.9e-06 55.8 287 23.0
TAR371G0827 Trochodendron aralioides HOM05D002420 ORTHO05D002422 7.9e-06 55.8 270 25.9


User provided reference genes

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