Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0162200 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 3.7e-37 157.5 70 100.0
Actinidia38960 Actinidia chinensis HOM05D003896 ORTHO05D004517 3.9e-31 137.5 70 82.9
Manes.18G091100 Manihot esculenta HOM05D003896 ORTHO05D004517 1.1e-30 136.0 70 84.3
Actinidia00232 Actinidia chinensis HOM05D003896 ORTHO05D004517 1.9e-30 135.2 70 81.4
CsaV3_3G018780 Cucumis sativus L. HOM05D003896 ORTHO05D004517 2.5e-30 134.8 70 82.9
Eucgr.I02701 Eucalyptus grandis HOM05D003896 ORTHO05D004517 5.7e-30 133.7 70 82.9
MELO3C019495.2 Cucumis melo HOM05D003896 ORTHO05D004517 7.4e-30 133.3 70 81.4
Atru.chr6.939 Acer truncatum HOM05D003896 ORTHO05D004517 9.7e-30 132.9 70 80.0
MBI13_g20498_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 1.3e-29 132.5 69 82.6
Potri.002G069200 Populus trichocarpa HOM05D003896 ORTHO05D004517 1.3e-29 132.5 70 80.0
Prupe.1G560700 Prunus persica HOM05D003896 ORTHO05D004517 1.3e-29 132.5 70 80.0
CANSAT11G1560 Cannabis sativa HOM05D003896 ORTHO05D004517 1.7e-29 132.1 70 80.0
CiPaw.05G040300 Carya illinoinensis HOM05D003896 ORTHO05D004517 1.7e-29 132.1 70 78.6
MBI13_g29655_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 1.7e-29 132.1 68 82.4
PGR142G1796 Punica granatum HOM05D003896 ORTHO05D004517 1.7e-29 132.1 70 80.0
AT1G15120 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 2.8e-29 131.3 70 80.0
Aqoxy2G00844 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 3.7e-29 131.0 70 77.1
CARHR015640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 3.7e-29 131.0 70 80.0
Haze_10788 Corylus avellana HOM05D003896 ORTHO05D004517 3.7e-29 131.0 69 79.7
BolC5t30061H Brassica oleracea HOM05D003896 ORTHO05D004517 4.8e-29 130.6 70 80.0
Nn5g28709 Nelumbo nucifera HOM05D003896 ORTHO05D004517 4.8e-29 130.6 69 79.7
BcaC05g25441 Brassica carinata HOM05D003896 ORTHO05D004517 6.3e-29 130.2 69 81.2
MD08G1223400 Malus domestica HOM05D003896 ORTHO05D004517 6.3e-29 130.2 70 78.6
Manes.02G178600 Manihot esculenta HOM05D003896 ORTHO05D004517 6.3e-29 130.2 70 81.4
TWI14G0008 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 8.2e-29 129.8 70 77.1
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 1.1e-28 129.4 70 78.6
BraA08t35095Z Brassica rapa HOM05D003896 ORTHO05D004517 1.1e-28 129.4 70 78.6
Lj6g0000311 Lotus japonicus HOM05D003896 ORTHO05D004517 1.1e-28 129.4 70 78.6
AL1G27180 Arabidopsis lyrata HOM05D003896 ORTHO05D004517 1.4e-28 129.0 69 79.7
Glyma.15G050500 Glycine max HOM05D003896 ORTHO05D004517 1.4e-28 129.0 70 78.6
Sp1g13460 Schrenkiella parvula HOM05D003896 ORTHO05D004517 1.4e-28 129.0 69 79.7
THA.LOC109116537 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 1.4e-28 129.0 70 80.0
arahy.Tifrunner.gnm1.ann1.D7TB4J Arachis hypogaea HOM05D003896 ORTHO05D004517 1.8e-28 128.6 69 76.8
arahy.Tifrunner.gnm1.ann1.EN81KK Arachis hypogaea HOM05D003896 ORTHO05D004517 1.8e-28 128.6 69 76.8
Thecc.02G044000 Theobroma cacao HOM05D003896 ORTHO05D004517 1.8e-28 128.6 70 75.7
TWI23G0468 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 1.8e-28 128.6 70 77.1
BcaC07g38769 Brassica carinata HOM05D003896 ORTHO05D004517 2.4e-28 128.3 70 77.1
BolC8t52063H Brassica oleracea HOM05D003896 ORTHO05D004517 2.4e-28 128.3 69 78.3
Dinv24242 Davidia involucrata HOM05D003896 ORTHO05D004517 2.4e-28 128.3 70 78.6
Sed0019459 Sechium edule HOM05D003896 ORTHO05D004517 2.4e-28 128.3 69 79.7
Carub.0001s1488 Capsella rubella HOM05D003896 ORTHO05D004517 3.1e-28 127.9 70 77.1
CDE04G2322 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 3.1e-28 127.9 69 76.8
FvH4_5g30500 Fragaria vesca HOM05D003896 ORTHO05D004517 3.1e-28 127.9 70 75.7
FAN04G1676 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.1e-28 127.9 70 75.7
FAN18G4256 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.1e-28 127.9 70 75.7
Potri.005G190901 Populus trichocarpa HOM05D003896 ORTHO05D004517 3.1e-28 127.9 70 82.9
RcHm_v2.0_Chr7g0225181 Rosa chinensis HOM05D003896 ORTHO05D004517 3.1e-28 127.9 69 76.8
BcaB03g14560 Brassica carinata HOM05D003896 ORTHO05D004517 4.1e-28 127.5 69 78.3
A08p31730 Brassica napus HOM05D003896 ORTHO05D004517 4.1e-28 127.5 69 78.3
C08p17020 Brassica napus HOM05D003896 ORTHO05D004517 4.1e-28 127.5 69 78.3
BolC8t49327H Brassica oleracea HOM05D003896 ORTHO05D004517 4.1e-28 127.5 69 78.3
Glyma.08G181800 Glycine max HOM05D003896 ORTHO05D004517 4.1e-28 127.5 70 77.1
Sed0011383 Sechium edule HOM05D003896 ORTHO05D004517 4.1e-28 127.5 69 76.8
ATR0772G203 Amborella trichopoda HOM05D003896 ORTHO05D004517 5.3e-28 127.1 69 78.3
ECA236G2466 Erigeron canadensis HOM05D003896 ORTHO05D004517 5.3e-28 127.1 70 77.1
HanXRQChr11g0337591 Helianthus annuus HOM05D003896 ORTHO05D004517 6.9e-28 126.7 70 77.1
Potri.002G069301 Populus trichocarpa HOM05D003896 ORTHO05D004517 6.9e-28 126.7 69 81.2
Sc02g0004100 Simmondsia chinensis HOM05D003896 ORTHO05D004517 9.1e-28 126.3 70 77.1
arahy.Tifrunner.gnm1.ann1.Q4HF2T Arachis hypogaea HOM05D003896 ORTHO05D004517 1.2e-27 125.9 70 78.6
FAN13G2961 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.2e-27 125.9 69 75.4
Aa31LG2G8780 Aethionema arabicum HOM05D003896 ORTHO05D004517 1.5e-27 125.6 69 76.8
Atru.chr13.2169 Acer truncatum HOM05D003896 ORTHO05D004517 2.0e-27 125.2 70 80.0
BcaB03g13075 Brassica carinata HOM05D003896 ORTHO05D004517 2.0e-27 125.2 70 75.7
CSS0003096 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 2.0e-27 125.2 70 77.1
CSS0009103 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 2.0e-27 125.2 70 77.1
Dinv19332 Davidia involucrata HOM05D003896 ORTHO05D004517 2.0e-27 125.2 68 75.0
Medtr2g008070 Medicago truncatula HOM05D003896 ORTHO05D004517 2.0e-27 125.2 69 75.4
TAR628G1659 Trochodendron aralioides HOM05D003896 ORTHO05D004517 2.0e-27 125.2 70 74.3
Duzib052G0314 Durio zibethinus HOM05D003896 ORTHO05D004517 2.6e-27 124.8 70 75.7
Gohir.D01G001100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.6e-27 124.8 70 75.7
QL11p018723 Quercus lobata HOM05D003896 ORTHO05D004517 3.4e-27 124.4 68 73.5
VMungo0540G0553 Vigna mungo HOM05D000025 ORTHO05D000136 3.4e-27 124.4 69 75.4
GSVIVG01034509001 Vitis vinifera HOM05D003896 ORTHO05D004517 3.4e-27 124.4 69 76.8
Cpa.g.sc2.46 Carica papaya HOM05D003896 ORTHO05D004517 4.5e-27 124.0 69 76.8
CDE04G0116 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 4.5e-27 124.0 70 78.6
Psat1g218920 Pisum sativum HOM05D003896 ORTHO05D004517 4.5e-27 124.0 70 74.3
THA.LOC109117087 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 4.5e-27 124.0 70 78.6
CiPaw.06G150500 Carya illinoinensis HOM05D003896 ORTHO05D004517 5.9e-27 123.6 70 77.1
Aqoxy5G02118 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 7.7e-27 123.2 68 77.9
Thhalv10001040m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 7.7e-27 123.2 70 74.3
Phvul.006G209400 Phaseolus vulgaris HOM05D003896 ORTHO05D004517 7.7e-27 123.2 70 72.9
arahy.Tifrunner.gnm1.ann1.MYBE61 Arachis hypogaea HOM05D003896 ORTHO05D004517 1.0e-26 122.9 69 76.8
Duzib132G0061 Durio zibethinus HOM05D003896 ORTHO05D004517 1.0e-26 122.9 70 75.7
Duzib248G1617 Durio zibethinus HOM05D003896 ORTHO05D004517 1.0e-26 122.9 70 74.3
Gohir.A12G033300 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.0e-26 122.9 70 77.1
Gohir.D12G039500 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.0e-26 122.9 70 77.1
AUR62035137 Chenopodium quinoa HOM05D003896 ORTHO05D004517 1.3e-26 122.5 71 73.2
Ciclev10002923m.g Citrus clementina HOM05D003896 ORTHO05D004517 1.7e-26 122.1 70 78.6
Nn1g06112 Nelumbo nucifera HOM05D003896 ORTHO05D004517 1.7e-26 122.1 70 74.3
Zm00001eb202390 Zea mays HOM05D003896 ORTHO05D004517 1.7e-26 122.1 57 93.0
MD05G1023300 Malus domestica HOM05D003896 ORTHO05D004517 2.2e-26 121.7 69 78.3
EL10Ac1g01528 Beta vulgaris HOM05D003896 ORTHO05D004517 2.9e-26 121.3 70 72.9
TPR.G19749 Trifolium pratense HOM05D003896 ORTHO05D004517 2.9e-26 121.3 68 72.1
FAN17G0735 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.8e-26 120.9 70 71.4
Sabra05G0145900 Salix brachista HOM05D003896 ORTHO05D004517 3.8e-26 120.9 67 73.1
BraA02t08170Z Brassica rapa HOM05D003896 ORTHO05D004517 5.0e-26 120.6 70 72.9
AUR62042907 Chenopodium quinoa HOM05D003896 ORTHO05D004517 5.0e-26 120.6 70 72.9
BolC2t10995H Brassica oleracea HOM05D003896 ORTHO05D004517 6.5e-26 120.2 70 72.9
Dinv01060 Davidia involucrata HOM05D003896 ORTHO05D004517 6.5e-26 120.2 70 72.9
PSO210G7830 Papaver somniferum HOM05D003896 ORTHO05D004517 6.5e-26 120.2 70 74.3
PSO238G0030 Papaver somniferum HOM05D003896 ORTHO05D004517 6.5e-26 120.2 70 74.3
TAR381G0439 Trochodendron aralioides HOM05D003896 ORTHO05D004517 6.5e-26 120.2 60 80.0
A02p31670 Brassica napus HOM05D003896 ORTHO05D004517 8.5e-26 119.8 69 73.9
Dinv05188 Davidia involucrata HOM05D003896 ORTHO05D004517 8.5e-26 119.8 70 70.0
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 8.5e-26 119.8 60 80.0
C02p49010 Brassica napus HOM05D003896 ORTHO05D004517 1.1e-25 119.4 68 73.5
FAN12G2386 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.1e-25 119.4 70 71.4
Gohir.A01G001400 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.1e-25 119.4 70 71.4
vmacro22914 Vaccinium macrocarpon HOM05D003896 ORTHO05D004517 1.1e-25 119.4 69 71.0
TWI34G0745 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 1.9e-25 118.6 70 74.3
ClCG05G009840 Citrullus lanatus HOM05D003896 ORTHO05D004517 3.2e-25 117.9 93 60.2
Lsat_1_v5_gn_9_116680 Lactuca sativa HOM05D003896 ORTHO05D004517 3.2e-25 117.9 69 68.1
Thecc.08G150500 Theobroma cacao HOM05D003896 ORTHO05D004517 3.2e-25 117.9 70 70.0
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 4.2e-25 117.5 68 69.1
FAN03G2302 Fragaria x ananassa HOM05D003896 ORTHO05D004517 4.2e-25 117.5 70 71.4
C05p13240 Brassica napus HOM05D003896 ORTHO05D004517 5.5e-25 117.1 61 78.7
BraA06t24292Z Brassica rapa HOM05D003896 ORTHO05D004517 7.2e-25 116.7 60 80.0
Gorai.008G041200 Gossypium raimondii HOM05D003896 ORTHO05D004517 7.2e-25 116.7 66 74.2
FvH4_7g02900 Fragaria vesca HOM05D003896 ORTHO05D004517 1.2e-24 115.9 70 74.3
Manes.18G073709 Manihot esculenta HOM05D003896 ORTHO05D004517 1.2e-24 115.9 70 72.9
Manes.18G090900 Manihot esculenta HOM05D003896 ORTHO05D004517 1.2e-24 115.9 70 72.9
CARHR143640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 1.6e-24 115.5 70 67.1
Thhalv10009667m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.6e-24 115.5 61 77.0
A06p11120 Brassica napus HOM05D003896 ORTHO05D004517 2.1e-24 115.2 60 78.3
Migut.N01017 Erythranthe guttata HOM05D003896 ORTHO05D004517 2.1e-24 115.2 70 67.1
Oeu012724.1 Olea europaea HOM05D003896 ORTHO05D004517 2.1e-24 115.2 70 67.1
C08p45150 Brassica napus HOM05D003896 ORTHO05D004517 2.7e-24 114.8 60 76.7
Prupe.8G028000 Prunus persica HOM05D003896 ORTHO05D004517 2.7e-24 114.8 70 74.3
Nitab4.5_0004027g0040 Nicotiana tabacum HOM05D003896 ORTHO05D004517 3.6e-24 114.4 70 70.0
A09p61560 Brassica napus HOM05D003896 ORTHO05D004517 4.7e-24 114.0 60 76.7
BraA09t41529Z Brassica rapa HOM05D003896 ORTHO05D004517 4.7e-24 114.0 60 76.7
AagrBONN_evm.TU.Sc2ySwM_228.2620 Anthoceros agrestis HOM05D003896 ORTHO05D004517 6.1e-24 113.6 68 72.1
Peaxi162Scf00067g02527 Petunia axillaris HOM05D003896 ORTHO05D004517 6.1e-24 113.6 70 68.6
TAR625G1245 Trochodendron aralioides HOM05D003896 ORTHO05D004517 6.1e-24 113.6 59 76.3
CBR_g10999 Chara braunii HOM05D003896 ORTHO05D004517 7.9e-24 113.2 72 69.4
Migut.B00649 Erythranthe guttata HOM05D003896 ORTHO05D004517 7.9e-24 113.2 69 66.7
Gorai.002G001600 Gossypium raimondii HOM05D003896 ORTHO05D004517 7.9e-24 113.2 61 75.4
Zm00001eb139450 Zea mays HOM05D003896 ORTHO05D004517 7.9e-24 113.2 58 82.8
Duzib116G0919 Durio zibethinus HOM05D003896 ORTHO05D004517 1.0e-23 112.8 70 68.6
FAN06G4594 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.0e-23 112.8 70 72.9
Mapoly0020s0072 Marchantia polymorpha HOM05D003896 ORTHO05D004517 1.0e-23 112.8 67 71.6
PGSC0003DMG400011391 Solanum tuberosum HOM05D003896 ORTHO05D004517 1.0e-23 112.8 70 67.1
unitig_578.g15948 Utricularia gibba HOM05D003896 ORTHO05D004517 1.0e-23 112.8 70 67.1
Nitab4.5_0000078g0350 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.4e-23 112.5 69 69.6
Sc26g0002640 Simmondsia chinensis HOM05D003896 ORTHO05D004517 1.4e-23 112.5 70 71.4
FAN08G0225 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.8e-23 112.1 59 74.6
Hma1.2p1_1800F.1_g302950 Hydrangea macrophylla HOM05D003896 ORTHO05D004517 1.8e-23 112.1 68 70.6
BcaB02g06577 Brassica carinata HOM05D003896 ORTHO05D004517 2.3e-23 111.7 60 75.0
HanXRQChr11g0337581 Helianthus annuus HOM05D003896 ORTHO05D004517 2.3e-23 111.7 68 70.6
Solyc09g074870.4 Solanum lycopersicum HOM05D003896 ORTHO05D004517 2.3e-23 111.7 70 68.6
Sopen09g029690 Solanum pennellii HOM05D003896 ORTHO05D004517 5.1e-23 110.5 70 67.1
CAN.G339.37 Capsicum annuum HOM05D003896 ORTHO05D004517 6.7e-23 110.2 69 66.7
Solyc09g150155.1 Solanum lycopersicum HOM05D003896 ORTHO05D004517 6.7e-23 110.2 69 66.7
SalBow6G5306 Salvia bowleyana HOM05D003896 ORTHO05D004517 4.4e-22 107.5 67 67.2
AT2G01090 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 7.4e-22 106.7 61 67.2
Gohir.A02G111100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 7.4e-22 106.7 70 70.0
Gorai.013G108600 Gossypium raimondii HOM05D003896 ORTHO05D004517 9.7e-22 106.3 70 68.6
FAN07G2777 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.2e-21 105.1 61 67.2
Gohir.D03G062900 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.8e-21 104.8 70 67.1
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 4.8e-21 104.0 70 68.6
Peaxi162Scf00152g01234 Petunia axillaris HOM05D003896 ORTHO05D004517 1.1e-20 102.8 99 51.5
Pp3c26_10210 Physcomitrium patens HOM05D003896 ORTHO05D004517 1.1e-20 102.8 64 68.8
Pp3c26_10390 Physcomitrium patens HOM05D003896 ORTHO05D004517 1.1e-20 102.8 64 68.8
CBR_g10998 Chara braunii HOM05D016306 ORTHO05D018315 1.8e-20 102.1 71 64.8
PRCOL_00005271 Prasinoderma coloniale HOM05D003896 ORTHO05D004517 6.9e-20 100.1 68 63.2
Nitab4.5_0005474g0030 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.2e-19 99.4 60 68.3
Lsat_1_v5_gn_7_79760 Lactuca sativa HOM05D003896 ORTHO05D004517 7.7e-19 96.7 58 69.0
CAN.G339.36 Capsicum annuum HOM05D000541 ORTHO05D000137 1.3e-18 95.9 60 66.7
MCO16G078 Micromonas commoda HOM05D003896 ORTHO05D004517 2.9e-18 94.7 68 60.3
Pp3c19_20470 Physcomitrium patens HOM05D003896 ORTHO05D004517 2.9e-18 94.7 57 64.9
SMO117G0126 Selaginella moellendorffii HOM05D003896 ORTHO05D004517 9.4e-17 89.7 58 63.8
Nitab4.5_0013344g0010 Nicotiana tabacum HOM05D003896 ORTHO05D004517 6.1e-16 87.0 49 67.3
Atru.chr6.943 Acer truncatum HOM05D003896 ORTHO05D004517 3.0e-15 84.7 40 85.0
Duzib132G0328 Durio zibethinus HOM05D003896 ORTHO05D004517 2.6e-14 81.6 58 60.3
Zm00001eb181710 Zea mays HOM05D003896 ORTHO05D004517 3.3e-14 81.3 70 57.1
Zm00001eb243140 Zea mays HOM05D003896 ORTHO05D004517 6.3e-13 77.0 70 54.3
PGSC0003DMG400011392 Solanum tuberosum HOM05D003896 ORTHO05D004517 7.0e-12 73.6 61 54.1
Thhalv10028069m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.6e-11 72.4 43 69.8
Thhalv10029056m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.6e-11 72.4 43 69.8
Os02g0541700 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 2.6e-11 71.6 70 51.4
FAN22G1408 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.2e-09 64.7 43 60.5
unitig_8.g2965 Utricularia gibba HOM05D003896 ORTHO05D004517 4.7e-08 60.8 34 55.9
COL.COLO4_17923 Corchorus olitorius HOM05D003896 ORTHO05D004517 3.0e-07 58.2 35 65.7
arahy.Tifrunner.gnm1.ann1.13ME4F Arachis hypogaea HOM05D000724 ORTHO05D015426 4.4e-06 54.3 50 46.0


User provided reference genes

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