Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0153500 Oryza sativa ssp. japonica HOM05D004622 ORTHO05D005431 5.5e-135 484.6 292 100.0
Os12g0155100 Oryza sativa ssp. japonica HOM05D004622 ORTHO05D005431 1.9e-71 273.5 265 64.5
Zm00001eb092610 Zea mays HOM05D004622 ORTHO05D005431 1.9e-66 256.9 288 60.4
Oeu035435.1 Olea europaea HOM05D004622 ORTHO05D005431 3.9e-32 142.9 253 36.4
TAR636G1327 Trochodendron aralioides HOM05D004622 ORTHO05D005431 1.3e-30 137.9 253 36.4
Thecc.09G281500 Theobroma cacao HOM05D004622 ORTHO05D005431 3.1e-29 133.3 254 36.6
CiPaw.13G134900 Carya illinoinensis HOM05D004622 ORTHO05D005431 6.9e-29 132.1 260 37.3
Duzib170G0788 Durio zibethinus HOM05D004622 ORTHO05D005431 1.2e-28 131.3 253 36.4
Nn2g14192 Nelumbo nucifera HOM05D004622 ORTHO05D005431 1.2e-28 131.3 266 37.2
Potri.009G162800 Populus trichocarpa HOM05D004622 ORTHO05D005431 1.5e-28 131.0 262 38.2
CSS0048557 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 2.6e-28 130.2 255 36.9
CSS0039489 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 4.5e-28 129.4 252 40.1
Oeu034007.1 Olea europaea HOM05D004622 ORTHO05D005431 6.4e-27 125.6 256 34.0
Manes.04G003000 Manihot esculenta HOM05D004622 ORTHO05D005431 1.1e-26 124.8 260 34.2
MELO3C004685.2 Cucumis melo HOM05D004622 ORTHO05D005431 1.9e-26 124.0 252 34.9
Duzib168G0112 Durio zibethinus HOM05D004622 ORTHO05D005431 1.9e-26 124.0 256 35.9
Rhsim01G0204900 Rhododendron simsii HOM05D004622 ORTHO05D005431 1.9e-26 124.0 251 39.4
Sabra09G0127000 Salix brachista HOM05D004622 ORTHO05D005431 1.9e-26 124.0 262 37.0
Cc01_g09000 Coffea canephora HOM05D004622 ORTHO05D005431 5.5e-26 122.5 290 32.8
MSTRG.18765 Avicennia marina HOM05D004622 ORTHO05D005431 9.3e-26 121.7 264 34.8
MSTRG.21036 Avicennia marina HOM05D004622 ORTHO05D005431 1.6e-25 120.9 261 34.5
CANSAT54G2229 Cannabis sativa HOM05D004622 ORTHO05D005431 3.5e-25 119.8 284 38.4
ClCG01G012170 Citrullus lanatus HOM05D004622 ORTHO05D005431 4.6e-25 119.4 255 34.9
MBI17_g08325_MAGBIO Magnolia biondii HOM05D004622 ORTHO05D005431 4.6e-25 119.4 268 35.4
CsaV3_1G015000 Cucumis sativus L. HOM05D004622 ORTHO05D005431 7.9e-25 118.6 257 34.2
CsaV3_1G015910 Cucumis sativus L. HOM05D004622 ORTHO05D005431 7.9e-25 118.6 257 34.2
Peaxi162Scf00040g00012 Petunia axillaris HOM05D004622 ORTHO05D005431 7.9e-25 118.6 258 36.0
Lj2C965T2 Lonicera japonica HOM05D004622 ORTHO05D005431 1.3e-24 117.9 264 35.6
Solyc11g068530.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 1.3e-24 117.9 281 34.5
Nitab4.5_0000755g0020 Nicotiana tabacum HOM05D004622 ORTHO05D005431 2.3e-24 117.1 268 35.8
Potri.004G201500 Populus trichocarpa HOM05D004622 ORTHO05D005431 2.3e-24 117.1 258 35.3
CiPaw.14G099300 Carya illinoinensis HOM05D004622 ORTHO05D005431 3.0e-24 116.7 254 36.6
Sopen11g027250 Solanum pennellii HOM05D004622 ORTHO05D005431 3.0e-24 116.7 285 34.0
PGSC0003DMG400026354 Solanum tuberosum HOM05D004622 ORTHO05D005431 3.9e-24 116.3 282 34.0
TAR633G0983 Trochodendron aralioides HOM05D004622 ORTHO05D005431 3.9e-24 116.3 280 34.6
RcHm_v2.0_Chr5g0045661 Rosa chinensis HOM05D004622 ORTHO05D005431 5.1e-24 115.9 257 34.6
RcHm_v2.0_Chr5g0046341 Rosa chinensis HOM05D004622 ORTHO05D005431 5.1e-24 115.9 257 34.6
FvH4_3g25120 Fragaria vesca HOM05D004622 ORTHO05D005431 6.7e-24 115.5 254 34.3
Cfa010005 Carpinus fangiana HOM05D004622 ORTHO05D005431 8.7e-24 115.2 253 36.4
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 1.5e-23 114.4 266 35.0
Actinidia07251 Actinidia chinensis HOM05D000892 ORTHO05D005431 3.3e-23 113.2 252 33.3
FAN11G1623 Fragaria x ananassa HOM05D004622 ORTHO05D005431 3.3e-23 113.2 254 33.9
Medtr2g086590 Medicago truncatula HOM05D004622 ORTHO05D005431 4.3e-23 112.8 251 35.9
PSO339G0545 Papaver somniferum HOM05D004622 ORTHO05D005431 4.3e-23 112.8 273 33.3
Ciclev10028879m.g Citrus clementina HOM05D004622 ORTHO05D005431 5.6e-23 112.5 270 32.2
PSO384G0540 Papaver somniferum HOM05D004622 ORTHO05D005431 5.6e-23 112.5 276 36.2
Nitab4.5_0006738g0040 Nicotiana tabacum HOM05D004622 ORTHO05D005431 7.4e-23 112.1 275 34.2
Manes.11G162600 Manihot esculenta HOM05D004622 ORTHO05D005431 9.6e-23 111.7 256 34.8
EL10Ac7g15833 Beta vulgaris HOM05D004622 ORTHO05D005431 1.3e-22 111.3 267 34.8
Haze_23364 Corylus avellana HOM05D004622 ORTHO05D005431 2.1e-22 110.5 255 35.7
Ca_01655_v3 Cicer arietinum L. HOM05D004622 ORTHO05D005431 2.8e-22 110.2 264 35.2
Glyma.13G315900 Glycine max HOM05D004622 ORTHO05D005431 3.7e-22 109.8 253 35.2
QL01p012122 Quercus lobata HOM05D004622 ORTHO05D005431 4.8e-22 109.4 263 37.6
MSTRG.12372 Avicennia marina HOM05D004622 ORTHO05D005431 8.2e-22 108.6 261 32.6
Lj3g0018609 Lotus japonicus HOM05D004622 ORTHO05D005431 8.2e-22 108.6 266 35.3
TWI79G1499 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 8.2e-22 108.6 253 32.8
CDE04G1878 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 4.0e-21 106.3 262 32.4
Gohir.D07G114300 Gossypium hirsutum HOM05D004622 ORTHO05D005431 4.0e-21 106.3 256 31.2
Prupe.6G132300 Prunus persica HOM05D004622 ORTHO05D005431 5.3e-21 105.9 266 33.1
Aqoxy2G01109 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 6.9e-21 105.5 257 33.9
Gohir.A07G110600 Gossypium hirsutum HOM05D004622 ORTHO05D005431 6.9e-21 105.5 259 32.8
PGR102G1757 Punica granatum HOM05D004622 ORTHO05D005431 6.9e-21 105.5 253 33.6
SalBow6G5234 Salvia bowleyana HOM05D004622 ORTHO05D005431 6.9e-21 105.5 262 33.2
PGSC0003DMG400005882 Solanum tuberosum HOM05D004622 ORTHO05D005431 6.9e-21 105.5 250 35.2
Lalb_Chr03g0028141 Lupinus albus HOM05D004622 ORTHO05D005431 9.0e-21 105.1 252 33.7
CAN.G1524.7 Capsicum annuum HOM05D004622 ORTHO05D005431 1.2e-20 104.8 292 32.9
CAN.G919.33 Capsicum annuum HOM05D004622 ORTHO05D005431 1.2e-20 104.8 252 33.7
Glyma.12G185600 Glycine max HOM05D004622 ORTHO05D005431 1.5e-20 104.4 253 35.6
arahy.Tifrunner.gnm1.ann1.72VZ3I Arachis hypogaea HOM05D004622 ORTHO05D005431 2.6e-20 103.6 262 41.6
Cpa.g.sc195.5 Carica papaya HOM05D004622 ORTHO05D005431 5.8e-20 102.4 254 34.3
Solyc06g074270.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 5.8e-20 102.4 257 35.8
TWI31G0739 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 5.8e-20 102.4 256 34.8
MD03G1147600 Malus domestica HOM05D004622 ORTHO05D005431 7.6e-20 102.1 306 30.1
HPP92_009743 Vanilla planifolia HOM05D004622 ORTHO05D005431 1.3e-19 101.3 261 35.2
ClCG02G022240 Citrullus lanatus HOM05D004622 ORTHO05D005431 3.8e-19 99.8 278 29.9
DCAR_010339 Daucus carota HOM05D004622 ORTHO05D005431 3.8e-19 99.8 252 32.5
Migut.N02485 Erythranthe guttata HOM05D004622 ORTHO05D005431 8.4e-19 98.6 277 31.0
Migut.D02437 Erythranthe guttata HOM05D004622 ORTHO05D005431 1.1e-18 98.2 261 33.0
Sopen06g030720 Solanum pennellii HOM05D004622 ORTHO05D005431 1.1e-18 98.2 250 33.6
PSO801G0264 Papaver somniferum HOM05D004622 ORTHO05D005431 1.4e-18 97.8 258 32.9
unitig_0.g1476 Utricularia gibba HOM05D000020 ORTHO05D000543 3.2e-18 96.7 283 31.1
Cpa.g.sc195.4 Carica papaya HOM05D004622 ORTHO05D005431 9.3e-18 95.1 252 34.5
TWI75G1018 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 2.7e-17 93.6 282 30.5
DCAR_012203 Daucus carota HOM05D004622 ORTHO05D005431 3.5e-17 93.2 256 29.7
Phvul.005G123200 Phaseolus vulgaris HOM05D004622 ORTHO05D005431 4.6e-17 92.8 253 32.8
SGA_v2.0_scaffold22G09855 Striga asiatica HOM05D004622 ORTHO05D005431 4.6e-17 92.8 252 32.9
Psat5g258080 Pisum sativum HOM05D004622 ORTHO05D005431 6.0e-17 92.4 248 33.1
MD11G1166300 Malus domestica HOM05D004622 ORTHO05D005431 7.9e-17 92.0 278 30.2
TPR.G4535 Trifolium pratense HOM05D004622 ORTHO05D005431 1.0e-16 91.7 249 34.9
VMungo1080G1565 Vigna mungo HOM05D004622 ORTHO05D005431 1.3e-16 91.3 253 32.8
HPP92_006359 Vanilla planifolia HOM05D004622 ORTHO05D005431 2.3e-16 90.5 278 28.8
Gorai.001G122600 Gossypium raimondii HOM05D004622 ORTHO05D005431 3.0e-16 90.1 255 30.6
AUR62009747 Chenopodium quinoa HOM05D004622 ORTHO05D005431 8.7e-16 88.6 238 32.4
AUR62036198 Chenopodium quinoa HOM05D004622 ORTHO05D005431 1.1e-15 88.2 270 30.7
FAN21G1025 Fragaria x ananassa HOM05D004622 ORTHO05D005431 9.7e-15 85.1 228 31.1
Aqoxy4G02755 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 1.6e-14 84.3 294 30.6
Dinv22834 Davidia involucrata HOM05D000892 ORTHO05D000750 3.7e-14 83.2 223 35.4
Lj3g0000197 Lotus japonicus HOM05D004622 ORTHO05D005431 4.8e-14 82.8 173 37.6
FAN25G2155 Fragaria x ananassa HOM05D004622 ORTHO05D005431 8.2e-14 82.0 226 31.0
MELO3C014501.2 Cucumis melo HOM05D004622 ORTHO05D005431 1.8e-13 80.9 251 29.1
unitig_27.g25015 Utricularia gibba HOM05D004622 ORTHO05D005431 1.8e-13 80.9 175 34.9
Atru.chr3.3214 Acer truncatum HOM05D004622 ORTHO05D005431 3.1e-13 80.1 128 41.4
Eucgr.B03842 Eucalyptus grandis HOM05D004622 ORTHO05D005431 4.1e-13 79.7 162 34.0
unitig_699.g19154 Utricularia gibba HOM05D004622 ORTHO05D005431 5.3e-13 79.3 133 36.8
Rhsim13G0112300 Rhododendron simsii HOM05D004622 ORTHO05D005431 6.9e-13 79.0 223 32.3
Glyma.12G090100 Glycine max HOM05D004622 ORTHO05D005431 9.0e-13 78.6 256 30.1
Gohir.A09G096001 Gossypium hirsutum HOM05D004622 ORTHO05D005431 1.5e-12 77.8 256 30.1
Gohir.D09G095666 Gossypium hirsutum HOM05D004622 ORTHO05D005431 1.5e-12 77.8 256 30.1
GSVIVG01036110001 Vitis vinifera HOM05D004622 ORTHO05D005431 2.6e-12 77.0 136 37.5
THA.LOC104799551 Tarenaya hassleriana HOM05D004622 ORTHO05D005431 1.3e-11 74.7 259 30.1
HanXRQChr11g0324161 Helianthus annuus HOM05D004622 ORTHO05D005431 5.0e-11 72.8 125 39.2
Zm00001eb242780 Zea mays HOM05D004622 ORTHO05D005431 8.5e-11 72.0 125 40.0
Glyma.11G182500 Glycine max HOM05D004622 ORTHO05D005431 1.1e-10 71.6 253 29.2
Sc21g0007040 Simmondsia chinensis HOM05D004622 ORTHO05D005431 1.1e-10 71.6 53 64.2
HPP92_003213 Vanilla planifolia HOM05D004622 ORTHO05D005431 1.1e-10 71.6 52 65.4
Nitab4.5_0003661g0010 Nicotiana tabacum HOM05D004622 ORTHO05D005431 1.4e-10 71.2 153 32.0
Actinidia35466 Actinidia chinensis HOM05D004622 ORTHO05D005431 2.5e-10 70.5 128 35.9
ATR0820G124 Amborella trichopoda HOM05D004622 ORTHO05D005431 2.5e-10 70.5 298 28.9
Actinidia24220 Actinidia chinensis HOM05D004622 ORTHO05D005431 3.2e-10 70.1 253 28.9
CsaV3_6G038370 Cucumis sativus L. HOM05D004622 ORTHO05D005431 7.2e-10 68.9 159 31.4
Lsat_1_v5_gn_2_59400 Lactuca sativa HOM05D004622 ORTHO05D005431 9.3e-10 68.6 131 38.9
DCAR_000195 Daucus carota HOM05D004622 ORTHO05D005431 3.6e-09 66.6 148 35.8
Medtr4g052880 Medicago truncatula HOM05D004622 ORTHO05D005431 3.6e-09 66.6 262 29.0
Nitab4.5_0001216g0120 Nicotiana tabacum HOM05D004622 ORTHO05D005431 3.6e-09 66.6 153 32.7
DCAR_006166 Daucus carota HOM05D004622 ORTHO05D005431 1.0e-08 65.1 52 57.7
Os02g0534000 Oryza sativa ssp. japonica HOM05D004622 ORTHO05D005431 5.1e-08 62.8 130 41.5
Lsat_1_v5_gn_6_38921 Lactuca sativa HOM05D000892 ORTHO05D000750 6.7e-08 62.4 50 58.0
SalBow6G1431 Salvia bowleyana HOM05D004622 ORTHO05D005431 8.7e-08 62.0 54 53.7
SGA_v2.0_scaffold295G47519 Striga asiatica HOM05D004622 ORTHO05D005431 8.7e-08 62.0 53 56.6
Ciclev10002008m.g Citrus clementina HOM05D006966 ORTHO05D008111 1.1e-07 61.6 172 30.8
CANSAT54G0218 Cannabis sativa HOM05D006966 ORTHO05D008111 1.9e-07 60.8 53 54.7
MBI03_g11328_MAGBIO Magnolia biondii HOM05D001105 ORTHO05D003643 1.9e-07 60.8 139 35.3
Sed0001344 Sechium edule HOM05D004622 ORTHO05D005431 1.9e-07 60.8 140 35.7
SGA_v2.0_scaffold177G39416 Striga asiatica HOM05D004622 ORTHO05D005431 2.5e-07 60.5 132 34.1
ATR0580G269 Amborella trichopoda HOM05D006966 ORTHO05D008111 9.7e-07 58.5 51 51.0
TAR633G0886 Trochodendron aralioides HOM05D006966 ORTHO05D008111 9.7e-07 58.5 52 51.9
Gohir.A08G212500 Gossypium hirsutum HOM05D006966 ORTHO05D008111 1.3e-06 58.2 77 36.4
Aqoxy4G02752 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 1.6e-06 57.8 56 42.9
Cpa.g.sc48.3 Carica papaya HOM05D006966 ORTHO05D008111 1.6e-06 57.8 82 35.4
CDE05G1565 Ceratophyllum demersum HOM05D006966 ORTHO05D008111 1.6e-06 57.8 53 50.9
Os03g0261800 Oryza sativa ssp. japonica HOM05D001105 ORTHO05D003643 1.6e-06 57.8 139 36.0
Potri.013G027100 Populus trichocarpa HOM05D006966 ORTHO05D008111 1.6e-06 57.8 53 49.1
Cc02_g32560 Coffea canephora HOM05D006966 ORTHO05D008111 2.2e-06 57.4 51 51.0
Dinv40245 Davidia involucrata HOM05D000556 ORTHO05D008111 2.2e-06 57.4 51 52.9
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 2.2e-06 57.4 52 55.8
Lsat_1_v5_gn_1_59220 Lactuca sativa HOM05D004622 ORTHO05D005431 2.2e-06 57.4 52 57.7
Lj9P680T20 Lonicera japonica HOM05D006966 ORTHO05D008111 2.2e-06 57.4 53 50.9
Zm00001eb083800 Zea mays HOM05D004622 ORTHO05D005431 2.2e-06 57.4 51 47.1
ATR0665G217 Amborella trichopoda HOM05D001105 ORTHO05D003643 2.8e-06 57.0 126 36.5
Hma1.2p1_0666F.1_g199360 Hydrangea macrophylla HOM05D006966 ORTHO05D008111 2.8e-06 57.0 51 51.0
PGR031G1796 Punica granatum HOM05D006966 ORTHO05D008111 2.8e-06 57.0 51 56.9
Phvul.006G095100 Phaseolus vulgaris HOM05D006966 ORTHO05D008111 3.7e-06 56.6 117 35.9
CSS0005342 Camellia sinensis var. sinensis HOM05D006966 ORTHO05D008111 4.8e-06 56.2 118 34.7
CSS0008116 Camellia sinensis var. sinensis HOM05D006966 ORTHO05D008111 4.8e-06 56.2 170 32.4
Solyc01g098570.2 Solanum lycopersicum HOM05D006966 ORTHO05D008111 4.8e-06 56.2 51 51.0
Thhalv10014710m.g Eutrema salsugineum HOM05D004622 ORTHO05D005431 6.3e-06 55.8 123 37.4
Psat3g009600 Pisum sativum HOM05D006966 ORTHO05D008111 6.3e-06 55.8 51 54.9
Actinidia07280 Actinidia chinensis HOM05D001105 ORTHO05D003643 8.2e-06 55.5 141 34.8
Glyma.19G238400 Glycine max HOM05D006966 ORTHO05D008111 8.2e-06 55.5 52 50.0
MBI19_g33142_MAGBIO Magnolia biondii HOM05D006966 ORTHO05D008111 8.2e-06 55.5 51 49.0
Sabra05G0038600 Salix brachista HOM05D006966 ORTHO05D008111 8.2e-06 55.5 54 46.3
TPR.G33165 Trifolium pratense HOM05D006966 ORTHO05D008111 8.2e-06 55.5 51 52.9


User provided reference genes

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