Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0153300 Oryza sativa ssp. japonica HOM05D003139 ORTHO05D003540 1.8e-139 499.2 242 100.0
Zm00001eb092640 Zea mays HOM05D026141 ORTHO05D003540 7.1e-80 301.2 240 68.8
Os12g0153900 Oryza sativa ssp. japonica HOM05D026141 ORTHO05D003540 3.1e-67 259.2 254 59.1
Zm00001eb164210 Zea mays HOM05D026141 ORTHO05D003540 1.7e-65 253.4 244 61.1
Zm00001eb118620 Zea mays HOM05D026141 ORTHO05D003540 2.9e-65 252.7 244 61.1
HPP92_006349 Vanilla planifolia HOM05D003139 ORTHO05D003540 3.4e-21 106.3 229 38.0
HPP92_011492 Vanilla planifolia HOM05D003139 ORTHO05D003540 1.8e-19 100.5 246 35.4
Actinidia05423 Actinidia chinensis HOM05D003139 ORTHO05D003540 3.1e-19 99.8 243 37.4
Hma1.2p1_0820F.1_g223870 Hydrangea macrophylla HOM05D003139 ORTHO05D003540 3.1e-19 99.8 252 37.7
PGR142G1499 Punica granatum HOM05D003139 ORTHO05D003540 7.7e-18 95.1 254 33.9
Dinv21200 Davidia involucrata HOM05D003139 ORTHO05D003540 1.3e-17 94.4 235 39.1
MD14G1023600 Malus domestica HOM05D003139 ORTHO05D003540 6.5e-17 92.0 259 32.8
Sc20g0006320 Simmondsia chinensis HOM05D003139 ORTHO05D003540 6.5e-17 92.0 254 31.5
SGA_v2.0_scaffold13G06709 Striga asiatica HOM05D003139 ORTHO05D003540 1.6e-15 87.4 249 36.5
CSS0009772 Camellia sinensis var. sinensis HOM05D003139 ORTHO05D003540 3.6e-15 86.3 231 32.5
Lsat_1_v5_gn_5_164981 Lactuca sativa HOM05D003139 ORTHO05D003540 6.1e-15 85.5 240 33.3
Rhsim04G0132000 Rhododendron simsii HOM05D003139 ORTHO05D003540 8.0e-15 85.1 235 34.9
Migut.L01785 Erythranthe guttata HOM05D003139 ORTHO05D003540 1.0e-14 84.7 247 34.0
Haze_19619 Corylus avellana HOM05D003139 ORTHO05D003540 1.4e-14 84.3 254 33.5
Zm00001eb147090 Zea mays HOM05D003139 ORTHO05D003540 1.4e-14 84.3 226 33.6
Glyma.03G196500 Glycine max HOM05D003139 ORTHO05D003540 1.5e-13 80.9 262 30.2
Phvul.001G190700 Phaseolus vulgaris HOM05D003139 ORTHO05D003540 1.5e-13 80.9 260 31.2
MSTRG.10370 Avicennia marina HOM05D003139 ORTHO05D003540 2.0e-13 80.5 249 35.3
Psat6g080520 Pisum sativum HOM05D003139 ORTHO05D003540 3.4e-13 79.7 242 31.4
FvH4_6g18850 Fragaria vesca HOM05D003139 ORTHO05D003540 7.5e-13 78.6 247 32.8
FAN14G1758 Fragaria x ananassa HOM05D003139 ORTHO05D003540 7.5e-13 78.6 247 32.0
Actinidia31269 Actinidia chinensis HOM05D003139 ORTHO05D003540 9.8e-13 78.2 243 32.9
FAN05G0400 Fragaria x ananassa HOM05D003139 ORTHO05D003540 9.8e-13 78.2 247 32.0
FAN05G1773 Fragaria x ananassa HOM05D003139 ORTHO05D003540 9.8e-13 78.2 247 32.0
CANSAT64G2974 Cannabis sativa HOM05D003139 ORTHO05D003540 1.3e-12 77.8 251 33.9
Cfa016615 Carpinus fangiana HOM05D003139 ORTHO05D003540 1.3e-12 77.8 258 33.7
FAN09G1837 Fragaria x ananassa HOM05D003139 ORTHO05D003540 1.3e-12 77.8 255 31.8
Medtr1g059890 Medicago truncatula HOM05D003139 ORTHO05D003540 1.3e-12 77.8 254 31.5
Glyma.19G194957 Glycine max HOM05D003139 ORTHO05D003540 1.7e-12 77.4 269 29.0
Nn6g34887 Nelumbo nucifera HOM05D003139 ORTHO05D003540 1.7e-12 77.4 249 32.1
Cc06_g05890 Coffea canephora HOM05D003139 ORTHO05D003540 2.2e-12 77.0 232 31.9
EL10Ac7g16909 Beta vulgaris HOM05D003139 ORTHO05D003540 2.8e-12 76.6 263 31.2
MD12G1024700 Malus domestica HOM05D003139 ORTHO05D003540 3.7e-12 76.3 241 32.4
Zm00001eb366850 Zea mays HOM05D003139 ORTHO05D003540 4.9e-12 75.9 227 30.0
FAN02G0223 Fragaria x ananassa HOM05D003139 ORTHO05D003540 6.3e-12 75.5 247 31.6
Nitab4.5_0014515g0010 Nicotiana tabacum HOM05D003139 ORTHO05D003540 6.3e-12 75.5 237 31.6
Aqoxy2G01158 Aquilegia oxysepala HOM05D003139 ORTHO05D003540 8.3e-12 75.1 229 30.6
TWI53G0306 Tripterygium wilfordii HOM05D003139 ORTHO05D003540 8.3e-12 75.1 260 31.9
Ah.15g090850 Amaranthus hybridus HOM05D003139 ORTHO05D003540 1.1e-11 74.7 255 30.2
Glyma.13G154300 Glycine max HOM05D003139 ORTHO05D003540 1.1e-11 74.7 264 29.5
Sabra06G0163800 Salix brachista HOM05D003139 ORTHO05D003540 1.1e-11 74.7 253 30.8
CsaV3_6G040710 Cucumis sativus L. HOM05D003139 ORTHO05D003540 1.8e-11 73.9 247 31.2
Oeu047203.1 Olea europaea HOM05D003139 ORTHO05D003540 1.8e-11 73.9 238 31.5
Potri.006G212800 Populus trichocarpa HOM05D003139 ORTHO05D003540 1.8e-11 73.9 254 28.7
Sed0002377 Sechium edule HOM05D003139 ORTHO05D003540 3.1e-11 73.2 222 29.7
CiPaw.10G010300 Carya illinoinensis HOM05D003139 ORTHO05D003540 5.4e-11 72.4 247 31.6
ClCG10G018920 Citrullus lanatus HOM05D003139 ORTHO05D003540 5.4e-11 72.4 237 32.1
DCAR_020744 Daucus carota HOM05D003139 ORTHO05D003540 5.4e-11 72.4 226 34.5
Migut.J01028 Erythranthe guttata HOM05D003139 ORTHO05D003540 7.0e-11 72.0 243 31.3
Oeu025672.1 Olea europaea HOM05D003139 ORTHO05D003540 7.0e-11 72.0 236 31.4
TPR.G23344 Trifolium pratense HOM05D003139 ORTHO05D003540 7.0e-11 72.0 240 30.8
Glyma.10G073600 Glycine max HOM05D003139 ORTHO05D003540 9.2e-11 71.6 137 39.4
HanXRQChr01g0010381 Helianthus annuus HOM05D003139 ORTHO05D003540 9.2e-11 71.6 239 30.1
TPR.G9897 Trifolium pratense HOM05D003139 ORTHO05D003540 9.2e-11 71.6 238 29.4
Nitab4.5_0001933g0030 Nicotiana tabacum HOM05D003139 ORTHO05D003540 2.0e-10 70.5 237 30.8
Sed0022451 Sechium edule HOM05D003139 ORTHO05D003540 2.0e-10 70.5 259 30.9
Thhalv10017798m.g Eutrema salsugineum HOM05D003139 ORTHO05D003540 2.7e-10 70.1 232 33.6
PGSC0003DMG400028163 Solanum tuberosum HOM05D003139 ORTHO05D003540 2.7e-10 70.1 240 28.8
TWI74G1218 Tripterygium wilfordii HOM05D003139 ORTHO05D003540 2.7e-10 70.1 275 28.7
AUR62006190 Chenopodium quinoa HOM05D003139 ORTHO05D003540 4.5e-10 69.3 254 30.7
AUR62028515 Chenopodium quinoa HOM05D003139 ORTHO05D003540 4.5e-10 69.3 263 31.9
Prupe.7G109200 Prunus persica HOM05D003139 ORTHO05D003540 4.5e-10 69.3 250 30.8
Solyc10g083330.1 Solanum lycopersicum HOM05D003139 ORTHO05D003540 4.5e-10 69.3 240 29.2
AL4G32320 Arabidopsis lyrata HOM05D003139 ORTHO05D003540 7.7e-10 68.6 236 33.1
Sopen10g032810 Solanum pennellii HOM05D003139 ORTHO05D003540 1.0e-09 68.2 240 28.8
Ca_00900_v3 Cicer arietinum L. HOM05D003139 ORTHO05D003540 1.3e-09 67.8 244 30.7
PSO339G1651 Papaver somniferum HOM05D003139 ORTHO05D003540 1.3e-09 67.8 268 28.4
Phvul.007G152700 Phaseolus vulgaris HOM05D003139 ORTHO05D003540 1.7e-09 67.4 143 39.2
TAR369G0615 Trochodendron aralioides HOM05D003139 ORTHO05D003540 1.7e-09 67.4 251 29.1
Gorai.006G155000 Gossypium raimondii HOM05D003139 ORTHO05D003540 2.3e-09 67.0 238 29.4
Nitab4.5_0000692g0050 Nicotiana tabacum HOM05D003139 ORTHO05D003540 2.3e-09 67.0 246 30.9
VMungo0720G0359 Vigna mungo HOM05D003139 ORTHO05D003540 2.3e-09 67.0 132 39.4
CiPaw.09G014800 Carya illinoinensis HOM05D003139 ORTHO05D003540 2.9e-09 66.6 245 32.2
MBI11_g26446_MAGBIO Magnolia biondii HOM05D003139 ORTHO05D003540 2.9e-09 66.6 246 27.6
AT2G36220 Arabidopsis thaliana HOM05D003139 ORTHO05D003540 3.8e-09 66.2 234 33.3
Ca_08987_v3 Cicer arietinum L. HOM05D003139 ORTHO05D003540 3.8e-09 66.2 246 29.3
CsaV3_3G037330 Cucumis sativus L. HOM05D003139 ORTHO05D003540 3.8e-09 66.2 245 31.0
Eucgr.A02660 Eucalyptus grandis HOM05D003139 ORTHO05D003540 3.8e-09 66.2 145 37.2
Gohir.D09G135100 Gossypium hirsutum HOM05D003139 ORTHO05D003540 3.8e-09 66.2 238 29.4
Manes.08G025900 Manihot esculenta HOM05D003139 ORTHO05D003540 3.8e-09 66.2 253 30.0
Atru.chr8.1495 Acer truncatum HOM05D003139 ORTHO05D003540 6.6e-09 65.5 263 29.3
DCAR_009168 Daucus carota HOM05D003139 ORTHO05D003540 6.6e-09 65.5 215 31.2
ECA248G2961 Erigeron canadensis HOM05D003139 ORTHO05D003540 6.6e-09 65.5 235 29.8
Gohir.A09G139500 Gossypium hirsutum HOM05D003139 ORTHO05D003540 6.6e-09 65.5 238 29.0
HanXRQChr08g0229891 Helianthus annuus HOM05D003139 ORTHO05D003540 6.6e-09 65.5 241 28.2
Sp4g18440 Schrenkiella parvula HOM05D003139 ORTHO05D003540 6.6e-09 65.5 234 33.3
VMungo1383G1679 Vigna mungo HOM05D003139 ORTHO05D003540 6.6e-09 65.5 255 26.7
Ah.08g210540 Amaranthus hybridus HOM05D003139 ORTHO05D003540 8.6e-09 65.1 232 32.3
Duzib093G1338 Durio zibethinus HOM05D003139 ORTHO05D003540 8.6e-09 65.1 234 30.3
Lj1g0000022 Lotus japonicus HOM05D003139 ORTHO05D003540 8.6e-09 65.1 191 36.1
Solyc09g009840.1 Solanum lycopersicum HOM05D003139 ORTHO05D003540 8.6e-09 65.1 242 31.0
CSS0031410 Camellia sinensis var. sinensis HOM05D003139 ORTHO05D003540 1.1e-08 64.7 126 38.1
CARHR130460 Cardamine hirsuta HOM05D003139 ORTHO05D003540 1.1e-08 64.7 232 32.8
Lsat_1_v5_gn_9_20601 Lactuca sativa HOM05D003139 ORTHO05D003540 1.1e-08 64.7 250 30.8
Zm00001eb331720 Zea mays HOM05D003173 ORTHO05D003546 1.1e-08 64.7 152 37.5
Gohir.D04G099100 Gossypium hirsutum HOM05D003139 ORTHO05D003540 1.5e-08 64.3 233 30.0
Gorai.009G401500 Gossypium raimondii HOM05D003139 ORTHO05D003540 1.5e-08 64.3 233 30.0
Potri.016G079500 Populus trichocarpa HOM05D003139 ORTHO05D003540 1.5e-08 64.3 265 30.2
ClCG04G010080 Citrullus lanatus HOM05D003139 ORTHO05D003540 1.9e-08 63.9 250 28.8
Oeu017682.1 Olea europaea HOM05D003139 ORTHO05D003540 1.9e-08 63.9 259 29.0
SGA_v2.0_scaffold184G39967 Striga asiatica HOM05D003139 ORTHO05D003540 1.9e-08 63.9 229 33.6
SGA_v2.0_scaffold35G14064 Striga asiatica HOM05D003139 ORTHO05D003540 1.9e-08 63.9 236 32.6
Sabra16G0085400 Salix brachista HOM05D003139 ORTHO05D003540 2.5e-08 63.5 270 27.8
Gohir.A04G062300 Gossypium hirsutum HOM05D003139 ORTHO05D003540 4.3e-08 62.8 233 30.0
TAR633G0951 Trochodendron aralioides HOM05D003139 ORTHO05D003540 4.3e-08 62.8 245 31.8
BcaB06g28923 Brassica carinata HOM05D003139 ORTHO05D003540 5.6e-08 62.4 223 32.3
Sed0010191 Sechium edule HOM05D003139 ORTHO05D003540 5.6e-08 62.4 226 30.1
Sopen09g004600 Solanum pennellii HOM05D003139 ORTHO05D003540 5.6e-08 62.4 243 31.3
PGSC0003DMG400008878 Solanum tuberosum HOM05D003139 ORTHO05D003540 5.6e-08 62.4 245 31.0
MELO3C024549.2 Cucumis melo HOM05D003139 ORTHO05D003540 9.5e-08 61.6 135 36.3
HanXRQChr04g0109341 Helianthus annuus HOM05D003139 ORTHO05D003540 1.2e-07 61.2 247 31.6
Gohir.D01G195400 Gossypium hirsutum HOM05D003139 ORTHO05D003540 1.6e-07 60.8 243 30.0
Gorai.002G239600 Gossypium raimondii HOM05D003139 ORTHO05D003540 1.6e-07 60.8 243 30.0
Lj5g0002620 Lotus japonicus HOM05D003139 ORTHO05D003540 1.6e-07 60.8 254 31.1
QL07p038927 Quercus lobata HOM05D003139 ORTHO05D003540 1.6e-07 60.8 241 28.2
BcaB02g09375 Brassica carinata HOM05D003139 ORTHO05D003540 2.1e-07 60.5 219 30.6
Lalb_Chr02g0154921 Lupinus albus HOM05D003139 ORTHO05D003540 2.1e-07 60.5 251 30.3
Aa31LG10G7720 Aethionema arabicum HOM05D003139 ORTHO05D003540 2.8e-07 60.1 242 27.7
BraA05t19916Z Brassica rapa HOM05D003139 ORTHO05D003540 2.8e-07 60.1 234 30.3
Gohir.A01G206000 Gossypium hirsutum HOM05D003139 ORTHO05D003540 2.8e-07 60.1 241 30.7
SalBow5G1418 Salvia bowleyana HOM05D003139 ORTHO05D003540 2.8e-07 60.1 255 29.8
Aqoxy4G02769 Aquilegia oxysepala HOM05D003139 ORTHO05D003540 3.6e-07 59.7 235 30.6
Cpa.g.sc5.12 Carica papaya HOM05D003139 ORTHO05D003540 4.7e-07 59.3 255 29.0
Oeu047862.1 Olea europaea HOM05D003139 ORTHO05D003540 4.7e-07 59.3 234 29.5
BcaC02g11724 Brassica carinata HOM05D003139 ORTHO05D003540 6.1e-07 58.9 225 30.2
A05p09620 Brassica napus HOM05D003139 ORTHO05D003540 6.1e-07 58.9 225 30.7
C04p11930 Brassica napus HOM05D003139 ORTHO05D003540 6.1e-07 58.9 225 30.2
BolC4t22840H Brassica oleracea HOM05D003139 ORTHO05D003540 6.1e-07 58.9 225 30.2
ECA247G2190 Erigeron canadensis HOM05D003139 ORTHO05D003540 8.0e-07 58.5 241 29.9
Nn2g14171 Nelumbo nucifera HOM05D003139 ORTHO05D003540 8.0e-07 58.5 240 28.3
COL.COLO4_29723 Corchorus olitorius HOM05D003139 ORTHO05D003540 1.4e-06 57.8 238 30.3
Os02g0533700 Oryza sativa ssp. japonica HOM05D035650 ORTHO05D037128 1.4e-06 57.8 136 34.6
Os04g0412700 Oryza sativa ssp. japonica HOM05D035650 ORTHO05D037128 1.4e-06 57.8 243 29.2
PSO384G0491 Papaver somniferum HOM05D003139 ORTHO05D003540 2.3e-06 57.0 255 26.7
Peaxi162Scf00404g00061 Petunia axillaris HOM05D003139 ORTHO05D003540 3.0e-06 56.6 242 28.1
Psat3g032560 Pisum sativum HOM05D003139 ORTHO05D003540 4.0e-06 56.2 242 28.5
Sabra16G0087500 Salix brachista HOM05D003139 ORTHO05D003540 4.0e-06 56.2 143 33.6
Dinv31692 Davidia involucrata HOM05D003139 ORTHO05D003540 5.2e-06 55.8 212 31.6
Duzib106G1991 Durio zibethinus HOM05D003139 ORTHO05D003540 5.2e-06 55.8 240 28.8
Lalb_Chr25g0288311 Lupinus albus HOM05D003139 ORTHO05D003540 5.2e-06 55.8 248 27.4
HanXRQChr04g0109331 Helianthus annuus HOM05D003139 ORTHO05D003540 6.8e-06 55.5 236 29.7


User provided reference genes

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