Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0149200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 5.8e-77 290.8 147 100.0
Zm00001eb406490 Zea mays HOM05D006043 ORTHO05D007309 7.4e-56 220.7 145 75.9
Os12g0147200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 3.4e-45 185.3 149 70.5
COL.COLO4_29832 Corchorus olitorius HOM05D006043 ORTHO05D007309 3.5e-29 132.1 144 54.2
Ciclev10013017m.g Citrus clementina HOM05D006043 ORTHO05D007309 5.0e-28 128.3 132 55.3
Gohir.D09G138000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 3.2e-27 125.6 135 53.3
Gorai.006G158600 Gossypium raimondii HOM05D006043 ORTHO05D007309 5.5e-27 124.8 135 52.6
Sc07g0005350 Simmondsia chinensis HOM05D006043 ORTHO05D007309 7.2e-27 124.4 138 53.6
Medtr7g103520 Medicago truncatula HOM05D006043 ORTHO05D007309 3.6e-26 122.1 139 54.0
BcaC01g04256 Brassica carinata HOM05D006043 ORTHO05D007309 4.7e-26 121.7 139 53.2
AL3G21330 Arabidopsis lyrata HOM05D006043 ORTHO05D007309 8.0e-26 120.9 126 52.4
Cpa.g.sc5.89 Carica papaya HOM05D006043 ORTHO05D007309 1.4e-25 120.2 141 51.1
Duzib106G1072 Durio zibethinus HOM05D006043 ORTHO05D007309 1.4e-25 120.2 134 52.2
CARHR084520 Cardamine hirsuta HOM05D006043 ORTHO05D007309 1.8e-25 119.8 125 50.4
BcaB03g11578 Brassica carinata HOM05D006043 ORTHO05D007309 3.0e-25 119.0 138 52.2
CsaV3_3G036730 Cucumis sativus L. HOM05D006043 ORTHO05D007309 3.0e-25 119.0 142 52.8
EL10Ac7g17005 Beta vulgaris HOM05D006043 ORTHO05D007309 5.2e-25 118.2 140 51.4
A03p35730 Brassica napus HOM05D006043 ORTHO05D007309 1.5e-24 116.7 130 53.1
Eucgr.K02389 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.5e-24 116.7 146 50.0
Gohir.A04G066428 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.5e-24 116.7 133 48.9
Lj1g0027910 Lotus japonicus HOM05D006043 ORTHO05D007309 2.0e-24 116.3 139 49.6
MD14G1014200 Malus domestica HOM05D006043 ORTHO05D007309 2.0e-24 116.3 149 48.3
Eucgr.K02399 Eucalyptus grandis HOM05D006043 ORTHO05D007309 4.4e-24 115.2 146 49.3
Gohir.D04G105000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 4.4e-24 115.2 133 48.1
Gorai.009G408700 Gossypium raimondii HOM05D006043 ORTHO05D007309 4.4e-24 115.2 133 48.1
C03p43400 Brassica napus HOM05D006043 ORTHO05D007309 5.7e-24 114.8 139 51.1
Eucgr.K02384 Eucalyptus grandis HOM05D006043 ORTHO05D007309 5.7e-24 114.8 146 49.3
Gohir.A09G136312 Gossypium hirsutum HOM05D006043 ORTHO05D007309 5.7e-24 114.8 152 47.4
CANSAT80G1206 Cannabis sativa HOM05D006043 ORTHO05D007309 7.5e-24 114.4 141 51.1
MELO3C009427.2 Cucumis melo HOM05D006043 ORTHO05D007309 9.8e-24 114.0 139 51.1
Eucgr.K02410 Eucalyptus grandis HOM05D006043 ORTHO05D007309 9.8e-24 114.0 146 48.6
Lalb_Chr20g0112261 Lupinus albus HOM05D006043 ORTHO05D007309 9.8e-24 114.0 140 50.7
VMungo1383G3657 Vigna mungo HOM05D006043 ORTHO05D007309 9.8e-24 114.0 139 49.6
MBI01_g32535_MAGBIO Magnolia biondii HOM05D006043 ORTHO05D007309 1.3e-23 113.6 140 48.6
Sp3g08330 Schrenkiella parvula HOM05D006043 ORTHO05D007309 1.3e-23 113.6 128 49.2
vmacro12136 Vaccinium macrocarpon HOM05D006043 ORTHO05D007309 1.3e-23 113.6 129 54.3
C05p58050 Brassica napus HOM05D002004 ORTHO05D002089 1.7e-23 113.2 140 50.7
BolC5t34462H Brassica oleracea HOM05D006043 ORTHO05D007309 1.7e-23 113.2 140 50.7
BraA03t12747Z Brassica rapa HOM05D006043 ORTHO05D007309 3.7e-23 112.1 139 50.4
AT3G10020 Arabidopsis thaliana HOM05D006043 ORTHO05D007309 4.8e-23 111.7 126 50.8
BraA05t22694Z Brassica rapa HOM05D006043 ORTHO05D007309 4.8e-23 111.7 142 50.0
Cfa016525 Carpinus fangiana HOM05D006043 ORTHO05D007309 4.8e-23 111.7 129 50.4
Aa31LG3G2550 Aethionema arabicum HOM05D006043 ORTHO05D007309 6.3e-23 111.3 130 52.3
A05p39030 Brassica napus HOM05D006043 ORTHO05D007309 6.3e-23 111.3 143 49.7
ClCG10G019450 Citrullus lanatus HOM05D006043 ORTHO05D007309 8.3e-23 110.9 139 49.6
Manes.08G019800 Manihot esculenta HOM05D006043 ORTHO05D007309 8.3e-23 110.9 141 49.6
TPR.G7024 Trifolium pratense HOM05D006043 ORTHO05D007309 1.1e-22 110.5 140 51.4
Haze_19524 Corylus avellana HOM05D006043 ORTHO05D007309 1.4e-22 110.2 142 48.6
Eucgr.A01560 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.4e-22 110.2 123 49.6
Prupe.7G119300 Prunus persica HOM05D006043 ORTHO05D007309 1.8e-22 109.8 141 47.5
Glyma.19G190400 Glycine max HOM05D006043 ORTHO05D007309 3.1e-22 109.0 139 48.9
Rhsim06G0171100 Rhododendron simsii HOM05D006043 ORTHO05D007309 3.1e-22 109.0 140 51.4
Ah.08g211020 Amaranthus hybridus HOM05D006043 ORTHO05D007309 4.1e-22 108.6 138 48.6
Atru.chr8.1654 Acer truncatum HOM05D006043 ORTHO05D007309 5.4e-22 108.2 144 47.9
BcaC05g29726 Brassica carinata HOM05D006043 ORTHO05D007309 7.0e-22 107.8 146 47.9
Carub.0003s0912 Capsella rubella HOM05D006043 ORTHO05D007309 7.0e-22 107.8 127 49.6
Phvul.001G185700 Phaseolus vulgaris HOM05D006043 ORTHO05D007309 7.0e-22 107.8 129 48.1
MD12G1016000 Malus domestica HOM05D006043 ORTHO05D007309 1.2e-21 107.1 145 46.9
Potri.013G014300 Populus trichocarpa HOM05D006043 ORTHO05D007309 1.6e-21 106.7 144 47.2
Ca_08959_v3 Cicer arietinum L. HOM05D006043 ORTHO05D007309 2.0e-21 106.3 138 47.1
RcHm_v2.0_Chr3g0471911 Rosa chinensis HOM05D006043 ORTHO05D007309 2.0e-21 106.3 143 46.2
CiPaw.10G004600 Carya illinoinensis HOM05D006043 ORTHO05D007309 3.5e-21 105.5 151 43.7
BolC3t16611H Brassica oleracea HOM05D006043 ORTHO05D007309 4.5e-21 105.1 140 47.9
BolC8t51238H Brassica oleracea HOM05D006043 ORTHO05D007309 4.5e-21 105.1 130 50.8
Sed0027852 Sechium edule HOM05D006043 ORTHO05D007309 4.5e-21 105.1 139 50.4
Glyma.03G190100 Glycine max HOM05D006043 ORTHO05D007309 5.9e-21 104.8 139 47.5
CSS0040940 Camellia sinensis var. sinensis HOM05D006043 ORTHO05D007309 7.7e-21 104.4 138 47.1
QL07p040748 Quercus lobata HOM05D006043 ORTHO05D007309 1.0e-20 104.0 143 45.5
TWI53G1797 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 1.3e-20 103.6 96 54.2
FAN02G0054 Fragaria x ananassa HOM05D006043 ORTHO05D007309 1.7e-20 103.2 154 42.9
FvH4_6g17700 Fragaria vesca HOM05D006043 ORTHO05D007309 2.3e-20 102.8 149 43.0
Thhalv10021699m.g Eutrema salsugineum HOM05D006043 ORTHO05D007309 3.8e-20 102.1 127 48.0
HanXRQChr09g0259401 Helianthus annuus HOM05D006043 ORTHO05D007309 6.6e-20 101.3 136 48.5
Nn6g35076 Nelumbo nucifera HOM05D006043 ORTHO05D007309 8.6e-20 100.9 136 43.4
THA.LOC104816380 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 3.3e-19 99.0 133 47.4
Peaxi162Scf00412g00073 Petunia axillaris HOM05D006043 ORTHO05D007309 5.5e-19 98.2 134 47.8
Duzib093G0521 Durio zibethinus HOM05D006043 ORTHO05D007309 7.2e-19 97.8 143 44.8
HPP92_021571 Vanilla planifolia HOM05D006043 ORTHO05D007309 7.2e-19 97.8 124 46.8
Aqoxy1G00961 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 4.7e-18 95.1 143 42.7
PGR004G1627 Punica granatum HOM05D006043 ORTHO05D007309 4.7e-18 95.1 132 48.5
Nn2g13971 Nelumbo nucifera HOM05D006043 ORTHO05D007309 6.1e-18 94.7 115 46.1
Dinv21268 Davidia involucrata HOM05D006043 ORTHO05D007309 1.0e-17 94.0 135 46.7
Nitab4.5_0010125g0040 Nicotiana tabacum HOM05D006043 ORTHO05D007309 5.2e-17 91.7 122 50.0
Cc06_g05110 Coffea canephora HOM05D006043 ORTHO05D007309 6.8e-17 91.3 135 43.7
CAN.G824.34 Capsicum annuum HOM05D006043 ORTHO05D007309 8.9e-17 90.9 114 47.4
Oeu030483.1 Olea europaea HOM05D006043 ORTHO05D007309 1.5e-16 90.1 143 45.5
Nitab4.5_0001922g0090 Nicotiana tabacum HOM05D006043 ORTHO05D007309 3.4e-16 89.0 107 50.5
Psat3g036320 Pisum sativum HOM05D006043 ORTHO05D007309 5.7e-16 88.2 108 48.1
DCAR_009167 Daucus carota HOM05D006043 ORTHO05D007309 1.3e-15 87.0 125 46.4
ECA126G0006 Erigeron canadensis HOM05D006043 ORTHO05D007309 1.3e-15 87.0 95 46.3
Aqoxy2G01470 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 1.7e-15 86.7 132 40.2
Lsat_1_v5_gn_2_22321 Lactuca sativa HOM05D006043 ORTHO05D007309 1.7e-15 86.7 132 45.5
PSO384G2483 Papaver somniferum HOM05D006043 ORTHO05D007309 1.4e-14 83.6 146 43.8
PGSC0003DMG400002724 Solanum tuberosum HOM05D006043 ORTHO05D007309 1.8e-14 83.2 138 42.8
Lj2P127T74 Lonicera japonica HOM05D006043 ORTHO05D007309 4.1e-14 82.0 125 48.0
Nitab4.5_0010125g0030 Nicotiana tabacum HOM05D006043 ORTHO05D007309 7.0e-14 81.3 146 40.4
TWI13G0012 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 1.2e-13 80.5 141 41.1
TWI74G0769 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 1.2e-13 80.5 141 41.1
SGA_v2.0_scaffold40G15419 Striga asiatica HOM05D006043 ORTHO05D007309 2.7e-13 79.3 128 44.5
C08p36560 Brassica napus HOM05D006043 ORTHO05D007309 4.5e-13 78.6 94 53.2
Cc00_g32800 Coffea canephora HOM05D006043 ORTHO05D007309 2.3e-12 76.3 142 40.1
Prupe.7G091800 Prunus persica HOM05D006043 ORTHO05D007309 2.3e-12 76.3 96 47.9
BcaC03g16179 Brassica carinata HOM05D006043 ORTHO05D007309 2.9e-12 75.9 94 52.1
AUR62033593 Chenopodium quinoa HOM05D006043 ORTHO05D007309 2.9e-12 75.9 138 39.9
Thecc.05G079900 Theobroma cacao HOM05D006043 ORTHO05D007309 5.0e-12 75.1 143 42.0
SalBow3G1044 Salvia bowleyana HOM05D006043 ORTHO05D007309 6.6e-12 74.7 133 42.1
C02p39530 Brassica napus HOM05D006043 ORTHO05D007309 8.6e-12 74.3 94 51.1
BolC2t09966H Brassica oleracea HOM05D006043 ORTHO05D007309 8.6e-12 74.3 94 51.1
Sopen09g003740 Solanum pennellii HOM05D006043 ORTHO05D007309 3.3e-11 72.4 137 40.9
TAR334G0001 Trochodendron aralioides HOM05D006043 ORTHO05D007309 3.3e-11 72.4 85 54.1
TAR369G1076 Trochodendron aralioides HOM05D006043 ORTHO05D007309 3.3e-11 72.4 85 54.1
Oeu040545.1 Olea europaea HOM05D006043 ORTHO05D007309 4.3e-11 72.0 149 38.9
Peaxi162Scf00412g00063 Petunia axillaris HOM05D006043 ORTHO05D007309 1.6e-10 70.1 150 36.0
Sopen09g003730 Solanum pennellii HOM05D006043 ORTHO05D007309 2.8e-10 69.3 119 41.2
PGSC0003DMG400002723 Solanum tuberosum HOM05D006043 ORTHO05D007309 3.6e-10 68.9 137 43.1
Solyc09g008970.1 Solanum lycopersicum HOM05D006043 ORTHO05D007309 6.1e-10 68.2 119 41.2
Cc00_g05260 Coffea canephora HOM05D006043 ORTHO05D007309 1.4e-09 67.0 143 39.9
Solyc09g008980.2 Solanum lycopersicum HOM05D006043 ORTHO05D007309 6.8e-09 64.7 134 37.3
SEGI_20897 Sequoiadendron giganteum HOM05D006043 ORTHO05D007309 2.0e-08 63.2 115 41.7
AUR62037886 Chenopodium quinoa HOM05D006043 ORTHO05D007309 3.4e-08 62.4 66 50.0
SMO347G0034 Selaginella moellendorffii HOM05D006043 ORTHO05D007309 2.2e-07 59.7 137 36.5
Lj4P368T6 Lonicera japonica HOM05D006043 ORTHO05D007309 8.3e-07 57.8 74 45.9
Zm00001eb227120 Zea mays HOM05D006043 ORTHO05D007309 3.2e-06 55.8 55 58.2
THA.LOC104823222 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 4.1e-06 55.5 64 46.9


User provided reference genes

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