Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 2.8e-92 342.0 187 100.0
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 1.3e-60 236.9 187 70.1
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 1.5e-40 170.2 159 59.7
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 1.8e-38 163.3 158 57.6
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 6.8e-38 161.4 173 53.8
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 1.2e-34 150.6 169 51.5
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 2.0e-34 149.8 153 54.2
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 4.3e-32 142.1 184 49.5
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 1.2e-31 140.6 158 53.2
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 1.6e-31 140.2 176 48.3
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 2.1e-31 139.8 186 46.8
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 1.5e-29 133.7 171 47.4
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 1.5e-29 133.7 195 45.1
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 1.5e-29 133.7 158 50.6
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 2.0e-29 133.3 155 51.0
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 3.4e-29 132.5 158 50.6
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 4.4e-29 132.1 167 47.9
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 4.4e-29 132.1 156 49.4
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 7.5e-29 131.3 175 47.4
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 9.8e-29 131.0 154 51.3
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 1.3e-28 130.6 190 44.2
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 2.2e-28 129.8 159 48.4
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 2.2e-28 129.8 175 46.9
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 2.9e-28 129.4 158 50.0
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 2.9e-28 129.4 156 48.7
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 3.7e-28 129.0 159 51.6
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 3.7e-28 129.0 164 47.6
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 4.9e-28 128.6 177 45.8
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 8.3e-28 127.9 172 45.9
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 2.4e-27 126.3 149 51.0
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 4.1e-27 125.6 154 50.0
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 1.6e-26 123.6 178 44.4
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 1.6e-26 123.6 167 46.1
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 2.0e-26 123.2 174 45.4
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 2.0e-26 123.2 158 45.6
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 2.0e-26 123.2 175 45.1
Os12g0146400 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 2.7e-26 122.9 188 42.6
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 3.5e-26 122.5 178 43.8
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 4.6e-26 122.1 156 49.4
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 4.6e-26 122.1 159 45.9
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 6.0e-26 121.7 173 43.4
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 7.8e-26 121.3 191 43.5
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 1.0e-25 120.9 173 43.4
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 1.0e-25 120.9 145 46.9
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 1.0e-25 120.9 191 42.9
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.3e-25 120.6 184 42.4
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 3.0e-25 119.4 174 44.8
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 3.0e-25 119.4 174 44.8
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 3.0e-25 119.4 158 44.9
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 3.9e-25 119.0 158 45.6
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 3.9e-25 119.0 187 42.8
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 3.9e-25 119.0 171 43.9
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 6.6e-25 118.2 179 43.6
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 6.6e-25 118.2 179 43.6
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 6.6e-25 118.2 166 42.2
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 6.6e-25 118.2 177 42.9
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 8.6e-25 117.9 174 44.3
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 8.6e-25 117.9 167 41.9
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 1.5e-24 117.1 194 41.8
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 1.9e-24 116.7 158 44.9
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 3.3e-24 115.9 158 43.7
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 7.3e-24 114.8 185 43.2
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 9.5e-24 114.4 178 44.4
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 1.6e-23 113.6 178 42.1
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 1.4e-22 110.5 185 38.9
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 4.0e-22 109.0 152 44.7
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 6.8e-22 108.2 174 41.4
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 3.4e-21 105.9 156 43.6
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 4.4e-21 105.5 187 40.6
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 5.8e-21 105.1 178 43.8
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 5.8e-21 105.1 239 36.0
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 7.5e-21 104.8 158 43.7
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 9.8e-21 104.4 185 39.5
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 2.9e-20 102.8 185 38.9
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 8.3e-20 101.3 180 41.7
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 8.3e-20 101.3 180 41.7
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 1.1e-19 100.9 174 42.0
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 1.1e-19 100.9 170 37.6
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 2.4e-19 99.8 174 41.4
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 2.4e-19 99.8 148 41.2
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 4.1e-19 99.0 158 42.4
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 4.1e-19 99.0 156 42.9
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 5.4e-19 98.6 155 40.6
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 9.2e-19 97.8 177 37.3
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 9.2e-19 97.8 191 38.7
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 1.2e-18 97.4 158 43.0
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 3.5e-18 95.9 194 39.2
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 6.0e-18 95.1 158 39.9
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 7.8e-18 94.7 203 36.9
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 7.8e-18 94.7 158 39.2
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 3.9e-17 92.4 220 35.0
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 4.3e-16 89.0 176 39.2
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 7.3e-16 88.2 155 38.1
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 1.2e-15 87.4 177 34.5
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 1.2e-15 87.4 156 36.5
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 1.2e-15 87.4 171 35.1
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 4.7e-15 85.5 177 35.0
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 6.2e-15 85.1 149 39.6
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 6.2e-15 85.1 149 39.6
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 1.8e-14 83.6 166 38.0
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 2.3e-14 83.2 104 51.0
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 4.0e-14 82.4 109 51.4
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 5.2e-14 82.0 121 43.8
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 5.2e-14 82.0 149 38.9
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 8.9e-14 81.3 156 35.9
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 8.9e-14 81.3 185 34.6
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 1.5e-13 80.5 158 36.7
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 2.6e-13 79.7 123 43.1
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 3.7e-12 75.9 178 34.8
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 1.9e-11 73.6 156 36.5
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 1.2e-10 70.9 85 50.6
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 2.1e-10 70.1 123 39.0
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 2.1e-10 70.1 181 35.4
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 2.7e-10 69.7 181 34.8
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 3.5e-10 69.3 158 34.8
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 7.8e-10 68.2 156 34.6
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 1.3e-09 67.4 181 32.0
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 2.3e-09 66.6 156 37.2
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 3.0e-09 66.2 184 32.1
arahy.Tifrunner.gnm1.ann1.SQKG7P Arachis hypogaea HOM05D005061 ORTHO05D006001 3.9e-09 65.9 104 45.2
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 1.5e-08 63.9 129 39.5
Sc19g0007210 Simmondsia chinensis HOM05D005061 ORTHO05D006001 7.3e-08 61.6 69 50.7
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 9.6e-08 61.2 184 31.5
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 4.7e-07 58.9 166 29.5
FvH4_4g13580 Fragaria vesca HOM05D005061 ORTHO05D006001 1.8e-06 57.0 161 36.0
FAN12G1864 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.8e-06 57.0 161 36.0
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 1.8e-06 57.0 156 32.1
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 4.0e-06 55.8 101 35.6
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 4.0e-06 55.8 101 35.6
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 6.8e-06 55.1 104 39.4


User provided reference genes

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