Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0148400 Oryza sativa ssp. japonica HOM05D006048 ORTHO05D007642 0.0e+00 1186.4 613 100.0
Zm00001eb164010 Zea mays HOM05D040562 ORTHO05D051656 1.9e-60 238.0 306 50.0
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 2.9e-53 214.2 343 37.9
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 3.0e-50 204.1 690 30.0
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 5.1e-50 203.4 406 34.7
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 3.3e-49 200.7 509 33.0
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 4.3e-49 200.3 441 33.8
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 2.1e-48 198.0 323 37.2
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 4.8e-48 196.8 566 30.7
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 6.2e-48 196.4 345 36.2
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 8.1e-48 196.1 319 34.5
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 1.4e-47 195.3 405 32.3
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 1.8e-47 194.9 317 36.6
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 3.1e-47 194.1 405 31.4
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 6.9e-47 193.0 319 35.4
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 1.2e-46 192.2 319 35.1
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 1.5e-46 191.8 514 31.3
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 1.5e-46 191.8 327 34.6
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 4.5e-46 190.3 319 35.1
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 4.5e-46 190.3 405 30.6
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 4.5e-46 190.3 451 31.0
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 1.0e-45 189.1 460 30.7
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 1.7e-45 188.3 533 30.8
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 2.2e-45 188.0 316 35.1
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 2.2e-45 188.0 531 29.8
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 3.8e-45 187.2 559 29.0
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 3.8e-45 187.2 558 29.6
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 4.9e-45 186.8 567 30.0
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 4.9e-45 186.8 564 29.8
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 8.4e-45 186.0 350 33.4
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 1.4e-44 185.3 620 28.9
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.9e-44 184.9 351 33.0
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 1.9e-44 184.9 342 33.9
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 2.5e-44 184.5 420 30.5
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 2.5e-44 184.5 319 34.5
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 2.5e-44 184.5 351 33.3
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 2.5e-44 184.5 514 28.4
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 3.2e-44 184.1 351 33.3
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 4.2e-44 183.7 319 33.5
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 1.2e-43 182.2 355 33.0
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 1.6e-43 181.8 356 34.3
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 1.6e-43 181.8 568 28.0
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 1.6e-43 181.8 313 34.2
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 3.5e-43 180.6 331 34.7
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 6.0e-43 179.9 374 33.2
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 1.0e-42 179.1 515 28.7
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 1.3e-42 178.7 516 28.3
ATR0626G180 Amborella trichopoda HOM05D006048 ORTHO05D007642 2.3e-42 177.9 338 34.0
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 3.0e-42 177.6 407 30.7
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 6.7e-42 176.4 350 33.4
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 8.7e-42 176.0 356 32.0
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 1.9e-41 174.9 351 32.2
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 1.9e-41 174.9 451 30.6
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 2.5e-41 174.5 484 28.7
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 5.7e-41 173.3 352 31.8
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 5.7e-41 173.3 409 29.1
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 7.4e-41 172.9 726 27.4
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 1.3e-40 172.2 406 29.8
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 1.3e-40 172.2 557 27.8
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 1.6e-40 171.8 320 34.4
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 2.8e-40 171.0 343 34.4
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 3.7e-40 170.6 343 34.7
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 4.8e-40 170.2 326 31.9
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 4.8e-40 170.2 658 26.6
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 1.1e-39 169.1 320 30.3
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 1.8e-39 168.3 324 30.6
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 2.4e-39 167.9 319 33.9
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 2.4e-39 167.9 323 33.4
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 5.3e-39 166.8 565 27.3
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 6.9e-39 166.4 664 26.2
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 9.0e-39 166.0 603 28.5
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 3.4e-38 164.1 470 28.3
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 1.0e-37 162.5 401 31.7
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 1.0e-37 162.5 350 30.6
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 1.3e-37 162.2 352 31.5
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 2.9e-37 161.0 318 30.8
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 5.0e-37 160.2 338 32.5
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 6.5e-37 159.8 573 28.6
CDE05G2441 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 8.5e-37 159.5 225 39.1
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 1.4e-36 158.7 604 26.7
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 1.4e-36 158.7 651 27.2
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.4e-36 158.7 321 33.6
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 2.1e-35 154.8 319 33.2
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 2.7e-35 154.5 559 26.1
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 2.7e-35 154.5 578 25.4
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 2.7e-35 154.5 326 31.0
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 3.6e-35 154.1 558 25.8
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 3.6e-35 154.1 558 26.0
Os12g0145632 Oryza sativa ssp. japonica HOM05D040562 ORTHO05D007642 3.6e-35 154.1 123 69.1
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 4.6e-35 153.7 358 29.3
HPP92_011281 Vanilla planifolia HOM05D006048 ORTHO05D007642 6.1e-35 153.3 214 39.3
HPP92_011303 Vanilla planifolia HOM05D006048 ORTHO05D007642 6.1e-35 153.3 214 39.3
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 7.9e-35 152.9 332 29.5
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 2.3e-34 151.4 318 31.4
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 1.5e-33 148.7 561 26.7
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 7.4e-33 146.4 552 25.7
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 1.3e-32 145.6 568 24.8
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 1.3e-32 145.6 232 38.4
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 2.2e-32 144.8 568 25.4
SEGI_14627 Sequoiadendron giganteum HOM05D006048 ORTHO05D007642 8.2e-32 142.9 625 26.7
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 1.8e-31 141.7 316 31.3
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 1.2e-30 139.0 532 27.8
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 1.5e-30 138.7 463 27.4
Zm00001eb244210 Zea mays HOM05D040562 ORTHO05D051656 6.5e-29 133.3 149 56.4
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 3.2e-28 131.0 222 33.3
Atru.chr2.428 Acer truncatum HOM05D006048 ORTHO05D007642 3.6e-27 127.5 177 40.1
Psat7g077840 Pisum sativum HOM05D006048 ORTHO05D007642 1.2e-22 112.5 180 36.7
CDE05G0200 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 7.7e-22 109.8 189 33.9
AagrBONN_evm.TU.Sc2ySwM_344.3982 Anthoceros agrestis HOM05D006048 ORTHO05D007642 1.3e-13 82.4 587 23.3
Mapoly0011s0030 Marchantia polymorpha HOM05D006048 ORTHO05D007642 1.3e-13 82.4 655 23.1
CiPaw.08G165500 Carya illinoinensis HOM05D006048 ORTHO05D007642 2.5e-12 78.2 70 50.0
SMO203G0156 Selaginella moellendorffii HOM05D006048 ORTHO05D007642 3.2e-12 77.8 189 29.1
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 1.4e-10 72.4 331 25.4


User provided reference genes

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