Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0147200 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 0.0e+00 1148.7 566 100.0
Os12g0141600 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 5.9e-202 708.0 572 67.7
Os03g0109900 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D030339 1.5e-88 331.3 546 41.0
Os03g0846400 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 8.0e-82 308.9 523 39.2
Os07g0665700 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 1.1e-70 271.9 572 36.2
Os01g0776500 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 5.4e-70 269.6 339 45.1
Zm00001eb408910 Zea mays HOM05D013536 ORTHO05D018072 2.8e-42 177.6 285 40.4
Os09g0436400 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 2.8e-34 151.0 237 41.4
Os07g0665300 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 1.2e-29 135.6 196 42.9
Os01g0278600 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 2.7e-21 107.8 227 32.6
Os09g0436700 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 2.3e-20 104.8 216 31.9
Os06g0142000 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D030339 4.3e-19 100.5 217 31.3
Ah.08g210040 Amaranthus hybridus HOM05D006716 ORTHO05D008396 2.4e-14 84.7 235 31.1
CSS0050127 Camellia sinensis var. sinensis HOM05D006716 ORTHO05D008396 2.3e-12 78.2 192 31.2
vmacro12393 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 2.3e-12 78.2 177 31.1
Lj9A35T20 Lonicera japonica HOM05D006716 ORTHO05D008396 5.1e-12 77.0 236 26.3
vmacro15746 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 1.9e-11 75.1 188 27.7
Duzib114G0358 Durio zibethinus HOM05D006716 ORTHO05D008396 1.6e-10 72.0 260 25.8
TPR.G40231 Trifolium pratense HOM05D006716 ORTHO05D008396 2.8e-10 71.2 209 28.7
PSO478G4756 Papaver somniferum HOM05D006716 ORTHO05D008396 4.8e-10 70.5 246 24.8
SGA_v2.0_scaffold57G20303 Striga asiatica HOM05D006716 ORTHO05D008396 6.2e-10 70.1 264 26.9
TWI31G0239 Tripterygium wilfordii HOM05D006716 ORTHO05D008396 1.4e-09 68.9 213 26.3
Hma1.2p1_0154F.1_g068000 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 2.4e-09 68.2 192 29.2
TPR.G36640 Trifolium pratense HOM05D006716 ORTHO05D008396 2.4e-09 68.2 209 28.7
DCAR_002644 Daucus carota HOM05D006716 ORTHO05D008396 3.1e-09 67.8 203 29.1
Rhsim02G0098700 Rhododendron simsii HOM05D006716 ORTHO05D008396 6.9e-09 66.6 188 29.3
Medtr5g464730 Medicago truncatula HOM05D006716 ORTHO05D008396 1.2e-08 65.9 236 26.7
Aqoxy4G01948 Aquilegia oxysepala HOM05D006716 ORTHO05D008396 1.5e-08 65.5 216 26.9
Duzib114G0950 Durio zibethinus HOM05D006716 ORTHO05D008396 1.5e-08 65.5 218 27.5
Solyc02g082720.4 Solanum lycopersicum HOM05D006716 ORTHO05D008396 1.5e-08 65.5 204 26.5
Os09g0436300 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 2.0e-08 65.1 214 29.4
vmacro15747 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 2.0e-08 65.1 204 26.5
vmacro15749 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 2.6e-08 64.7 188 28.2
Rhsim02G0098800 Rhododendron simsii HOM05D006716 ORTHO05D008396 4.5e-08 63.9 190 28.4
Duzib114G0505 Durio zibethinus HOM05D006716 ORTHO05D008396 5.8e-08 63.5 218 25.2
vmacro12392 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 5.8e-08 63.5 188 27.1
PSO478G1238 Papaver somniferum HOM05D006716 ORTHO05D008396 9.9e-08 62.8 225 28.9
Rhsim09G0048400 Rhododendron simsii HOM05D006716 ORTHO05D008396 6.4e-07 60.1 161 29.8
Aqoxy4G01949 Aquilegia oxysepala HOM05D006716 ORTHO05D008396 8.4e-07 59.7 255 23.1
DCAR_004702 Daucus carota HOM05D012205 ORTHO05D014781 1.1e-06 59.3 179 27.9
Hma1.2p1_0310F.1_g120920 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 1.1e-06 59.3 185 27.6
TPR.G29566 Trifolium pratense HOM05D006716 ORTHO05D008396 1.9e-06 58.5 181 28.7
Sopen02g027280 Solanum pennellii HOM05D006716 ORTHO05D008396 2.4e-06 58.2 209 25.4
Hma1.2p1_0003F.1_g003620 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 5.5e-06 57.0 189 27.0


User provided reference genes

Program Settings