Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0147100 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 6.4e-137 490.7 247 100.0
Os12g0144000 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 5.3e-123 444.5 240 91.2
Zm00001eb342980 Zea mays HOM05D007231 ORTHO05D009024 5.9e-106 387.9 243 79.8
Zm00001eb196600 Zea mays HOM05D007231 ORTHO05D009024 1.1e-104 383.6 244 79.1
Nn1g02166 Nelumbo nucifera HOM05D007231 ORTHO05D009024 1.4e-75 287.0 244 57.4
TAR636G3122 Trochodendron aralioides HOM05D007231 ORTHO05D009024 5.4e-75 285.0 247 55.9
TAR365G1202 Trochodendron aralioides HOM05D007231 ORTHO05D009024 2.3e-73 279.6 247 55.1
MBI19_g24716_MAGBIO Magnolia biondii HOM05D007231 ORTHO05D009024 7.3e-72 274.6 244 54.5
CAN.G609.11 Capsicum annuum HOM05D007231 ORTHO05D009024 9.5e-72 274.2 247 55.1
Actinidia00741 Actinidia chinensis HOM05D007231 ORTHO05D009024 3.6e-71 272.3 247 55.1
Ciclev10021857m.g Citrus clementina HOM05D007231 ORTHO05D009024 4.7e-71 271.9 247 53.8
Sopen09g026640 Solanum pennellii HOM05D007231 ORTHO05D009024 4.0e-70 268.9 247 54.7
CDE04G0796 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 6.8e-70 268.1 243 54.3
Nitab4.5_0001028g0140 Nicotiana tabacum HOM05D007231 ORTHO05D009024 6.8e-70 268.1 248 54.8
Actinidia09146 Actinidia chinensis HOM05D007231 ORTHO05D009024 1.2e-69 267.3 247 54.7
Cpa.g.sc64.168 Carica papaya HOM05D007231 ORTHO05D009024 1.2e-69 267.3 245 53.5
SalBow4G2275 Salvia bowleyana HOM05D007231 ORTHO05D009024 1.5e-69 266.9 248 54.8
Thecc.01G282400 Theobroma cacao HOM05D007231 ORTHO05D009024 1.5e-69 266.9 247 55.1
CiPaw.08G104200 Carya illinoinensis HOM05D007231 ORTHO05D009024 2.0e-69 266.5 248 54.8
Solyc09g064930.3 Solanum lycopersicum HOM05D007231 ORTHO05D009024 2.0e-69 266.5 247 53.8
Gohir.A08G069100 Gossypium hirsutum HOM05D007231 ORTHO05D009024 3.4e-69 265.8 247 54.7
Aqoxy2G03271 Aquilegia oxysepala HOM05D007231 ORTHO05D009024 4.4e-69 265.4 233 55.4
GSVIVG01011110001 Vitis vinifera HOM05D007231 ORTHO05D009024 4.4e-69 265.4 245 53.9
Migut.D00275 Erythranthe guttata HOM05D007231 ORTHO05D009024 5.8e-69 265.0 248 52.8
Atru.chr5.1389 Acer truncatum HOM05D007231 ORTHO05D009024 7.5e-69 264.6 247 53.4
MSTRG.18222 Avicennia marina HOM05D007231 ORTHO05D009024 7.5e-69 264.6 247 53.8
PSO210G0158 Papaver somniferum HOM05D007231 ORTHO05D009024 9.8e-69 264.2 248 53.6
Cc01_g19680 Coffea canephora HOM05D007231 ORTHO05D009024 1.3e-68 263.8 247 53.4
Duzib211G0396 Durio zibethinus HOM05D007231 ORTHO05D009024 1.7e-68 263.5 246 53.3
Peaxi162Scf00570g00058 Petunia axillaris HOM05D007231 ORTHO05D009024 1.7e-68 263.5 247 53.4
COL.COLO4_09128 Corchorus olitorius HOM05D007231 ORTHO05D009024 2.2e-68 263.1 246 53.3
Cfa006118 Carpinus fangiana HOM05D007231 ORTHO05D009024 2.9e-68 262.7 251 52.6
RcHm_v2.0_Chr6g0291381 Rosa chinensis HOM05D007231 ORTHO05D009024 2.9e-68 262.7 249 53.0
Gohir.D08G077400 Gossypium hirsutum HOM05D007231 ORTHO05D009024 3.7e-68 262.3 247 53.8
Nitab4.5_0002386g0100 Nicotiana tabacum HOM05D002055 ORTHO05D009024 3.7e-68 262.3 248 54.0
FvH4_2g23810 Fragaria vesca HOM05D007231 ORTHO05D009024 6.4e-68 261.5 250 52.8
THA.LOC104801225 Tarenaya hassleriana HOM05D007231 ORTHO05D009024 6.4e-68 261.5 247 54.3
Gorai.004G082300 Gossypium raimondii HOM05D007231 ORTHO05D009024 8.3e-68 261.2 247 53.8
Manes.05G074400 Manihot esculenta HOM05D007231 ORTHO05D009024 8.3e-68 261.2 246 52.8
Rhsim13G0023500 Rhododendron simsii HOM05D007231 ORTHO05D009024 1.4e-67 260.4 247 52.6
CANSAT25G1925 Cannabis sativa HOM05D007231 ORTHO05D009024 2.4e-67 259.6 248 55.2
Dinv11248 Davidia involucrata HOM05D007231 ORTHO05D009024 5.4e-67 258.5 247 53.4
QL12p022281 Quercus lobata HOM05D007231 ORTHO05D009024 5.4e-67 258.5 245 52.7
MD11G1288600 Malus domestica HOM05D007231 ORTHO05D009024 7.0e-67 258.1 248 52.4
Prupe.8G243400 Prunus persica HOM05D007231 ORTHO05D009024 9.2e-67 257.7 246 51.2
HanXRQChr01g0002311 Helianthus annuus HOM05D007231 ORTHO05D009024 1.2e-66 257.3 228 54.4
Lj5g0005680 Lotus japonicus HOM05D007231 ORTHO05D009024 1.2e-66 257.3 243 54.3
Aa31LG1G9290 Aethionema arabicum HOM05D007231 ORTHO05D009024 1.6e-66 256.9 246 52.8
FAN27G1680 Fragaria x ananassa HOM05D007231 ORTHO05D009024 3.5e-66 255.8 257 51.8
AT1G03250 Arabidopsis thaliana HOM05D007231 ORTHO05D009024 4.6e-66 255.4 246 53.3
AL1G12740 Arabidopsis lyrata HOM05D007231 ORTHO05D009024 7.8e-66 254.6 246 53.7
BcaC05g24637 Brassica carinata HOM05D007231 ORTHO05D009024 1.0e-65 254.2 245 53.5
CARHR002550 Cardamine hirsuta HOM05D007231 ORTHO05D009024 1.0e-65 254.2 246 52.0
A10p01800 Brassica napus HOM05D007231 ORTHO05D009024 1.3e-65 253.8 245 53.1
Potri.019G046400 Populus trichocarpa HOM05D007231 ORTHO05D009024 1.3e-65 253.8 245 51.8
Sp1g02240 Schrenkiella parvula HOM05D007231 ORTHO05D009024 1.7e-65 253.4 246 52.4
Dinv32951 Davidia involucrata HOM05D007231 ORTHO05D009024 2.3e-65 253.1 250 52.4
BcaC05g24551 Brassica carinata HOM05D007231 ORTHO05D009024 3.0e-65 252.7 245 53.5
Sabra19G0055900 Salix brachista HOM05D007231 ORTHO05D009024 3.0e-65 252.7 245 51.0
vmacro02556 Vaccinium macrocarpon HOM05D007231 ORTHO05D009024 6.6e-65 251.5 246 52.0
Lsat_1_v5_gn_5_190100 Lactuca sativa HOM05D007231 ORTHO05D009024 8.6e-65 251.1 250 51.2
C05p01780 Brassica napus HOM05D007231 ORTHO05D009024 1.1e-64 250.8 256 51.6
BraA10t42455Z Brassica rapa HOM05D007231 ORTHO05D009024 1.5e-64 250.4 245 53.1
Oeu015959.1 Olea europaea HOM05D007231 ORTHO05D009024 1.9e-64 250.0 222 53.6
ECA248G0248 Erigeron canadensis HOM05D002055 ORTHO05D002120 2.5e-64 249.6 227 55.1
EL10Ac7g17220 Beta vulgaris HOM05D007231 ORTHO05D009024 3.3e-64 249.2 298 46.3
AUR62036799 Chenopodium quinoa HOM05D007231 ORTHO05D009024 3.3e-64 249.2 274 46.7
MELO3C015851.2 Cucumis melo HOM05D007231 ORTHO05D009024 4.3e-64 248.8 247 51.8
Lj2C1175G18 Lonicera japonica HOM05D007231 ORTHO05D009024 4.3e-64 248.8 310 44.5
Carub.0001s0236 Capsella rubella HOM05D007231 ORTHO05D009024 5.6e-64 248.4 246 52.0
Oeu022878.1 Olea europaea HOM05D007231 ORTHO05D009024 5.6e-64 248.4 222 54.1
Thhalv10008549m.g Eutrema salsugineum HOM05D007231 ORTHO05D009024 9.5e-64 247.7 251 50.6
Lalb_Chr06g0163091 Lupinus albus HOM05D007231 ORTHO05D009024 9.5e-64 247.7 240 50.0
HanXRQChr11g0327631 Helianthus annuus HOM05D007231 ORTHO05D009024 1.2e-63 247.3 244 50.8
Sed0024964 Sechium edule HOM05D002055 ORTHO05D002120 1.6e-63 246.9 225 52.9
SGA_v2.0_scaffold11G05804 Striga asiatica HOM05D002055 ORTHO05D002120 1.6e-63 246.9 260 50.0
arahy.Tifrunner.gnm1.ann1.9UA39Y Arachis hypogaea HOM05D007231 ORTHO05D009024 2.1e-63 246.5 246 52.4
arahy.Tifrunner.gnm1.ann1.LJDI86 Arachis hypogaea HOM05D007231 ORTHO05D009024 2.1e-63 246.5 246 52.4
Ca_09766_v3 Cicer arietinum L. HOM05D002055 ORTHO05D002120 2.8e-63 246.1 222 54.1
CsaV3_7G028660 Cucumis sativus L. HOM05D007231 ORTHO05D009024 2.8e-63 246.1 247 51.4
Lalb_Chr02g0142831 Lupinus albus HOM05D007231 ORTHO05D009024 2.8e-63 246.1 239 51.0
Glyma.10G025400 Glycine max HOM05D007231 ORTHO05D009024 6.2e-63 245.0 240 51.2
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 6.2e-63 245.0 222 52.7
Eucgr.K03384 Eucalyptus grandis HOM05D007231 ORTHO05D009024 8.1e-63 244.6 245 51.0
BolC5t28956H Brassica oleracea HOM05D007231 ORTHO05D009024 1.4e-62 243.8 252 51.2
SGA_v2.0_scaffold1G00456 Striga asiatica HOM05D007231 ORTHO05D009024 6.8e-62 241.5 248 50.8
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 5.8e-61 238.4 207 58.0
TWI14G0923 Tripterygium wilfordii HOM05D002055 ORTHO05D002120 7.5e-61 238.0 201 57.7
Hund05352 Selenicereus undatus HOM05D007231 ORTHO05D009024 2.2e-60 236.5 246 50.0
Phvul.007G170300 Phaseolus vulgaris HOM05D007231 ORTHO05D009024 6.4e-60 235.0 242 50.0
FAN20G2044 Fragaria x ananassa HOM05D007231 ORTHO05D009024 1.4e-59 233.8 298 44.6
Medtr1g072510 Medicago truncatula HOM05D007231 ORTHO05D009024 1.4e-59 233.8 234 50.0
ATR0626G005 Amborella trichopoda HOM05D007231 ORTHO05D009024 3.2e-59 232.6 206 51.5
unitig_0.g109 Utricularia gibba HOM05D007231 ORTHO05D009024 3.2e-59 232.6 206 52.9
Psat6g125920 Pisum sativum HOM05D007231 ORTHO05D009024 9.2e-59 231.1 223 51.1
ClCG09G006940 Citrullus lanatus HOM05D002055 ORTHO05D002120 4.6e-58 228.8 199 55.3
PGR044G2216 Punica granatum HOM05D007231 ORTHO05D009024 2.9e-52 209.5 183 53.6
CSS0040014 Camellia sinensis var. sinensis HOM05D007231 ORTHO05D009024 1.4e-51 207.2 185 53.0
Duzib138G1636 Durio zibethinus HOM05D007231 ORTHO05D009024 5.4e-51 205.3 246 45.5
Ciclev10022442m.g Citrus clementina HOM05D007231 ORTHO05D009024 4.6e-50 202.2 183 52.5
AUR62039907 Chenopodium quinoa HOM05D007231 ORTHO05D009024 8.6e-49 198.0 152 57.9
Sc05g0004910 Simmondsia chinensis HOM05D007231 ORTHO05D009024 3.6e-47 192.6 166 57.2
SEGI_15193 Sequoiadendron giganteum HOM05D007231 ORTHO05D009024 1.0e-33 147.9 219 37.0
Mapoly0057s0044 Marchantia polymorpha HOM05D007231 ORTHO05D009024 3.3e-32 142.9 226 38.5
SMO137G0298 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 9.6e-24 114.8 225 35.1
SMO170G0043 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 2.1e-23 113.6 225 34.7
MCO13G326 Micromonas commoda HOM05D007231 ORTHO05D009024 4.5e-21 105.9 239 32.2
Pp3c4_28170 Physcomitrium patens HOM05D007231 ORTHO05D009024 7.6e-21 105.1 215 32.6
AagrBONN_evm.TU.Sc2ySwM_117.667 Anthoceros agrestis HOM05D007231 ORTHO05D009024 1.3e-20 104.4 180 30.6
TPR.G19967 Trifolium pratense HOM05D007231 ORTHO05D009024 6.5e-20 102.1 115 45.2
Cre01.g040100 Chlamydomonas reinhardtii HOM05D007231 ORTHO05D009024 1.6e-15 87.4 165 31.5
CDE02G1070 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 1.1e-11 74.7 130 34.6
BcaC05g24635 Brassica carinata HOM05D007231 ORTHO05D009024 1.9e-11 73.9 67 56.7
Cc01_g19320 Coffea canephora HOM05D007231 ORTHO05D009024 1.3e-09 67.8 133 33.1
TPR.G24733 Trifolium pratense HOM05D007231 ORTHO05D009024 3.9e-09 66.2 47 68.1
CDE02G2493 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 1.5e-08 64.3 67 50.7


User provided reference genes

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