Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.6e-212 742.7 421 100.0
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 4.0e-195 684.9 362 92.8
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.5e-154 550.1 288 97.9
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 3.3e-133 479.2 353 67.7
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 1.8e-99 367.1 302 59.9
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 9.1e-99 364.8 287 61.0
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 1.3e-97 360.9 305 56.1
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 1.7e-97 360.5 303 57.8
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 1.7e-97 360.5 300 58.3
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 2.2e-97 360.1 288 60.8
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 8.5e-97 358.2 287 60.3
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 1.5e-96 357.5 307 57.7
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 1.5e-96 357.5 305 58.0
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 1.9e-96 357.1 287 59.9
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 1.9e-96 357.1 302 58.9
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 1.9e-96 357.1 302 58.9
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 1.9e-96 357.1 307 57.3
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 4.2e-96 355.9 287 58.9
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 4.2e-96 355.9 303 58.4
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 4.2e-96 355.9 287 58.2
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 5.5e-96 355.5 303 58.1
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 9.4e-96 354.8 289 58.5
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 9.4e-96 354.8 298 57.7
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 9.4e-96 354.8 302 57.9
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 1.6e-95 354.0 287 59.6
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 2.1e-95 353.6 301 56.8
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 2.7e-95 353.2 319 56.4
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 2.7e-95 353.2 301 58.5
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 4.7e-95 352.4 306 55.6
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 8.0e-95 351.7 264 64.0
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 1.0e-94 351.3 299 58.2
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 1.0e-94 351.3 289 57.8
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 1.4e-94 350.9 291 59.1
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 1.8e-94 350.5 302 56.6
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 2.3e-94 350.1 298 57.7
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 2.3e-94 350.1 302 56.3
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 5.2e-94 349.0 299 57.2
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 6.7e-94 348.6 259 62.5
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 8.8e-94 348.2 250 63.6
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 8.8e-94 348.2 302 56.3
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 1.2e-93 347.8 297 58.2
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 1.5e-93 347.4 263 62.7
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 1.5e-93 347.4 303 57.4
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 1.5e-93 347.4 264 62.9
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 2.0e-93 347.1 288 60.4
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 2.0e-93 347.1 304 57.9
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 2.6e-93 346.7 288 58.0
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 2.6e-93 346.7 259 62.2
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 3.3e-93 346.3 304 57.6
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 3.3e-93 346.3 251 65.3
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 3.3e-93 346.3 303 56.8
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 5.7e-93 345.5 263 62.4
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 5.7e-93 345.5 298 58.4
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 7.5e-93 345.1 298 57.7
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 7.5e-93 345.1 288 56.6
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 9.7e-93 344.7 267 61.8
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 9.7e-93 344.7 307 57.7
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 9.7e-93 344.7 300 57.3
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.3e-92 344.4 308 55.2
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.3e-92 344.4 307 55.4
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.3e-92 344.4 329 52.9
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 1.3e-92 344.4 299 56.9
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 1.3e-92 344.4 263 62.4
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 1.3e-92 344.4 302 57.3
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 1.7e-92 344.0 265 61.5
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 1.7e-92 344.0 304 54.6
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 2.2e-92 343.6 310 55.2
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 2.2e-92 343.6 325 56.0
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 2.8e-92 343.2 264 61.4
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 4.8e-92 342.4 265 61.1
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 6.3e-92 342.0 299 56.5
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 1.4e-91 340.9 308 53.6
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 1.8e-91 340.5 284 57.0
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 1.8e-91 340.5 260 61.5
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.4e-91 340.1 287 59.2
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 2.4e-91 340.1 246 63.8
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 3.1e-91 339.7 304 53.9
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 4.1e-91 339.3 301 56.5
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 5.3e-91 339.0 269 58.4
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 5.3e-91 339.0 294 57.8
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 7.0e-91 338.6 263 60.8
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 7.0e-91 338.6 287 57.5
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 9.1e-91 338.2 257 61.1
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 9.1e-91 338.2 304 56.2
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 1.2e-90 337.8 303 55.8
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 1.2e-90 337.8 270 58.5
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 1.6e-90 337.4 263 60.5
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 2.0e-90 337.0 265 60.4
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 2.0e-90 337.0 268 59.0
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 3.5e-90 336.3 267 58.8
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 4.5e-90 335.9 263 60.5
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 7.7e-90 335.1 270 57.0
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 7.7e-90 335.1 274 56.6
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 1.3e-89 334.3 270 57.0
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 2.2e-89 333.6 262 61.5
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 2.9e-89 333.2 263 61.2
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 2.9e-89 333.2 267 58.1
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 3.8e-89 332.8 264 59.8
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 6.5e-89 332.0 300 55.3
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 6.5e-89 332.0 301 55.1
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 8.5e-89 331.6 290 54.5
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 1.1e-88 331.3 257 60.7
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 1.5e-88 330.9 304 53.9
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 4.2e-88 329.3 249 61.4
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 7.2e-88 328.6 249 60.2
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 2.7e-87 326.6 250 58.4
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 3.6e-87 326.2 263 58.9
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 4.7e-87 325.9 297 55.6
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 6.1e-87 325.5 242 64.0
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 3.4e-85 319.7 228 64.5
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 2.2e-84 317.0 357 46.2
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 1.4e-83 314.3 287 54.4
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 2.9e-81 306.6 343 45.2
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 5.5e-80 302.4 219 62.1
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 8.0e-79 298.5 267 53.9
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 5.2e-78 295.8 303 50.8
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 1.2e-77 294.7 296 50.7
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 4.1e-75 286.2 210 64.3
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 4.1e-75 286.2 186 72.0
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 7.0e-75 285.4 257 54.9
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 9.2e-75 285.0 229 58.5
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 1.2e-74 284.6 285 50.9
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 8.3e-68 261.9 277 50.2
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 1.6e-66 257.7 288 48.6
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 2.3e-65 253.8 307 45.6
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 1.1e-62 245.0 186 62.9
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 3.4e-61 240.0 302 46.0
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 7.8e-58 228.8 259 45.6
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.0e-57 228.4 177 59.9
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.0e-57 228.4 177 59.9
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 3.9e-57 226.5 177 59.9
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 6.6e-57 225.7 287 42.5
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 8.6e-57 225.3 208 52.9
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 4.7e-55 219.5 168 60.7
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 8.1e-55 218.8 196 56.6
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 1.4e-54 218.0 176 59.1
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.8e-54 217.6 206 54.4
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 1.2e-53 214.9 125 77.6
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 1.5e-53 214.5 124 78.2
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 7.5e-53 212.2 176 58.5
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 5.4e-51 206.1 190 54.7
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 6.2e-47 192.6 221 46.6
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 2.3e-41 174.1 300 36.0
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 4.3e-40 169.9 193 47.2
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 9.6e-40 168.7 177 49.2
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.2e-39 168.3 177 49.2
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 8.1e-39 165.6 213 41.8
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.1e-38 165.2 168 51.2
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 6.6e-33 146.0 227 39.2
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.5e-29 134.8 222 37.8
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 6.0e-26 122.9 103 57.3
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 3.0e-25 120.6 74 67.6
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 6.5e-12 76.3 63 54.0
PRCOL_00003402 Prasinoderma coloniale HOM05D034583 ORTHO05D334032 2.7e-10 70.9 221 28.5
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 1.8e-06 58.2 51 54.9
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 1.8e-06 58.2 51 54.9


User provided reference genes

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