Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0146100 Oryza sativa ssp. japonica HOM05D000484 ORTHO05D295902 2.9e-160 569.3 495 100.0
Os12g0141100 Oryza sativa ssp. japonica HOM05D000484 ORTHO05D000346 2.6e-121 439.9 442 95.0
Os11g0145000 Oryza sativa ssp. japonica HOM05D000484 ORTHO05D000346 1.6e-118 430.6 442 93.9
Zm00001eb093110 Zea mays HOM05D000484 ORTHO05D000346 9.2e-58 228.8 451 72.1
HPP92_001381 Vanilla planifolia HOM05D000484 ORTHO05D000346 2.1e-14 84.7 178 34.8
Nn7g36689 Nelumbo nucifera HOM05D000484 ORTHO05D000346 3.1e-13 80.9 162 35.2
Eucgr.J01180 Eucalyptus grandis HOM05D000484 ORTHO05D000346 9.9e-12 75.9 165 34.5
COL.COLO4_20662 Corchorus olitorius HOM05D000484 ORTHO05D000346 1.3e-11 75.5 160 35.6
TAR633G0612 Trochodendron aralioides HOM05D000484 ORTHO05D000346 1.7e-11 75.1 169 34.3
RcHm_v2.0_Chr1g0325051 Rosa chinensis HOM05D000484 ORTHO05D000346 4.9e-11 73.6 161 38.5
TAR623G0781 Trochodendron aralioides HOM05D000484 ORTHO05D000346 8.4e-11 72.8 169 33.7
TAR369G0411 Trochodendron aralioides HOM05D000484 ORTHO05D000346 1.1e-10 72.4 164 32.9
Rhsim07G0067200 Rhododendron simsii HOM05D000484 ORTHO05D000346 1.4e-10 72.0 178 33.7
Ciclev10003475m.g Citrus clementina HOM05D000484 ORTHO05D000346 3.2e-10 70.9 162 35.2
Duzib114G0331 Durio zibethinus HOM05D000484 ORTHO05D000346 5.4e-10 70.1 162 35.8
PGR044G0543 Punica granatum HOM05D000484 ORTHO05D000346 7.1e-10 69.7 155 36.1
Actinidia10159 Actinidia chinensis HOM05D000484 ORTHO05D000346 1.6e-09 68.6 166 34.9
Manes.04G159100 Manihot esculenta HOM05D000484 ORTHO05D000346 2.1e-09 68.2 138 37.0
SHI03998 Sapria himalayana HOM05D000484 ORTHO05D000346 2.1e-09 68.2 153 36.6
HPP92_011284 Vanilla planifolia HOM05D000484 ORTHO05D000346 2.1e-09 68.2 194 33.0
Gohir.D05G283100 Gossypium hirsutum HOM05D000484 ORTHO05D000346 2.7e-09 67.8 160 32.5
Gorai.009G297500 Gossypium raimondii HOM05D000484 ORTHO05D000346 2.7e-09 67.8 160 32.5
Medtr3g014650 Medicago truncatula HOM05D000484 ORTHO05D000346 2.7e-09 67.8 164 35.4
Cfa010920 Carpinus fangiana HOM05D000484 ORTHO05D000346 3.5e-09 67.4 157 34.4
FAN03G2711 Fragaria x ananassa HOM05D000484 ORTHO05D000346 3.5e-09 67.4 156 31.4
PGSC0003DMG400018382 Solanum tuberosum HOM05D000484 ORTHO05D000346 3.5e-09 67.4 165 33.9
HPP92_011306 Vanilla planifolia HOM05D000484 ORTHO05D000346 3.5e-09 67.4 196 31.6
Aqoxy2G00376 Aquilegia oxysepala HOM05D000484 ORTHO05D000346 4.6e-09 67.0 155 36.1
FvH4_7g03200 Fragaria vesca HOM05D000484 ORTHO05D000346 4.6e-09 67.0 156 31.4
FAN06G1232 Fragaria x ananassa HOM05D000484 ORTHO05D000346 4.6e-09 67.0 156 31.4
FAN10G2431 Fragaria x ananassa HOM05D000484 ORTHO05D000346 4.6e-09 67.0 155 34.8
Gohir.A05G281900 Gossypium hirsutum HOM05D000484 ORTHO05D000346 4.6e-09 67.0 160 32.5
Atru.chr12.1329 Acer truncatum HOM05D000484 ORTHO05D000346 6.0e-09 66.6 153 34.6
BcaC07g40102 Brassica carinata HOM05D000484 ORTHO05D000346 6.0e-09 66.6 161 37.9
Cpa.g.sc5.172 Carica papaya HOM05D000484 ORTHO05D000346 6.0e-09 66.6 156 35.3
Eucgr.G03231 Eucalyptus grandis HOM05D000484 ORTHO05D000346 7.9e-09 66.2 167 36.5
Nn2g14831 Nelumbo nucifera HOM05D000484 ORTHO05D000346 7.9e-09 66.2 157 33.8
Thhalv10005792m.g Eutrema salsugineum HOM05D000484 ORTHO05D000346 1.0e-08 65.9 164 36.0
A09p49880 Brassica napus HOM05D000484 ORTHO05D000346 1.3e-08 65.5 161 37.3
BraA09t40439Z Brassica rapa HOM05D000484 ORTHO05D000346 1.3e-08 65.5 161 37.3
FAN01G0813 Fragaria x ananassa HOM05D000484 ORTHO05D000346 1.3e-08 65.5 156 30.8
Manes.11G005500 Manihot esculenta HOM05D000484 ORTHO05D000346 1.3e-08 65.5 154 37.0
Sc11g0006460 Simmondsia chinensis HOM05D000484 ORTHO05D000346 1.3e-08 65.5 158 34.8
BcaC07g40011 Brassica carinata HOM05D000484 ORTHO05D000346 1.8e-08 65.1 161 37.3
C08p32240 Brassica napus HOM05D000484 ORTHO05D000346 1.8e-08 65.1 167 35.9
BolC8t50840H Brassica oleracea HOM05D000484 ORTHO05D000346 1.8e-08 65.1 167 35.9
Thecc.10G154100 Theobroma cacao HOM05D000484 ORTHO05D000346 1.8e-08 65.1 163 35.6
Actinidia06237 Actinidia chinensis HOM05D000484 ORTHO05D000346 3.0e-08 64.3 176 32.4
Sopen01g040140 Solanum pennellii HOM05D000484 ORTHO05D000346 3.0e-08 64.3 163 33.1
AT3G56960 Arabidopsis thaliana HOM05D000484 ORTHO05D000346 3.9e-08 63.9 164 35.4
BcaC08g44813 Brassica carinata HOM05D000484 ORTHO05D000346 5.1e-08 63.5 158 35.4
BolC6t37558H Brassica oleracea HOM05D000484 ORTHO05D000346 5.1e-08 63.5 158 35.4
MD07G1050500 Malus domestica HOM05D000484 ORTHO05D000346 5.1e-08 63.5 156 32.7
Haze_03040 Corylus avellana HOM05D000484 ORTHO05D000346 6.7e-08 63.2 156 32.7
Gohir.D04G015500 Gossypium hirsutum HOM05D000484 ORTHO05D000346 6.7e-08 63.2 146 33.6
Gorai.012G018000 Gossypium raimondii HOM05D000484 ORTHO05D000346 6.7e-08 63.2 146 33.6
EL10Ac2g02799 Beta vulgaris HOM05D000484 ORTHO05D000346 8.7e-08 62.8 145 32.4
C06p23940 Brassica napus HOM05D000484 ORTHO05D000346 8.7e-08 62.8 159 37.1
Ca_26011_v3 Cicer arietinum L. HOM05D000484 ORTHO05D000346 8.7e-08 62.8 171 36.3
Duzib106G1617 Durio zibethinus HOM05D000484 ORTHO05D000346 8.7e-08 62.8 159 33.3
Nitab4.5_0000307g0280 Nicotiana tabacum HOM05D000484 ORTHO05D000346 8.7e-08 62.8 159 32.7
Sp5g05620 Schrenkiella parvula HOM05D000484 ORTHO05D000346 8.7e-08 62.8 165 35.2
vmacro13753 Vaccinium macrocarpon HOM05D000484 ORTHO05D000346 8.7e-08 62.8 166 32.5
Carub.0005s2370 Capsella rubella HOM05D000484 ORTHO05D000346 1.1e-07 62.4 165 34.5
CiPaw.13G014000 Carya illinoinensis HOM05D000484 ORTHO05D000346 1.1e-07 62.4 160 33.8
Dinv32025 Davidia involucrata HOM05D000484 ORTHO05D000346 1.1e-07 62.4 160 34.4
Nitab4.5_0004955g0060 Nicotiana tabacum HOM05D000484 ORTHO05D000346 1.1e-07 62.4 155 33.5
Solyc01g096410.4 Solanum lycopersicum HOM05D000484 ORTHO05D000346 1.1e-07 62.4 158 32.3
ClCG05G026840 Citrullus lanatus HOM05D000484 ORTHO05D000346 1.5e-07 62.0 160 31.2
VMungo1127G0875 Vigna mungo HOM05D000484 ORTHO05D000346 1.5e-07 62.0 154 35.1
arahy.Tifrunner.gnm1.ann1.PW73EB Arachis hypogaea HOM05D000484 ORTHO05D000346 1.9e-07 61.6 155 34.8
CSS0044372 Camellia sinensis var. sinensis HOM05D000484 ORTHO05D000346 1.9e-07 61.6 164 34.1
Glyma.15G234800 Glycine max HOM05D000484 ORTHO05D000346 1.9e-07 61.6 155 36.1
Sabra01G0020300 Salix brachista HOM05D000484 ORTHO05D000346 1.9e-07 61.6 161 36.0
ATR0213G010 Amborella trichopoda HOM05D000484 ORTHO05D000346 2.5e-07 61.2 185 31.9
Manes.08G059600 Manihot esculenta HOM05D000484 ORTHO05D000346 2.5e-07 61.2 162 33.3
TPR.G36022 Trifolium pratense HOM05D000484 ORTHO05D000346 2.5e-07 61.2 153 35.9
AL5G38390 Arabidopsis lyrata HOM05D000484 ORTHO05D000346 3.3e-07 60.8 164 34.8
A07p23170 Brassica napus HOM05D000484 ORTHO05D000346 3.3e-07 60.8 159 36.5
BraA07t29978Z Brassica rapa HOM05D000484 ORTHO05D000346 3.3e-07 60.8 159 36.5
CDE04G1405 Ceratophyllum demersum HOM05D000484 ORTHO05D000346 3.3e-07 60.8 135 32.6
Duzib106G0012 Durio zibethinus HOM05D000484 ORTHO05D000346 3.3e-07 60.8 160 36.9
Potri.003G196000 Populus trichocarpa HOM05D000484 ORTHO05D000346 3.3e-07 60.8 154 35.1
QL07p010337 Quercus lobata HOM05D000484 ORTHO05D000346 3.3e-07 60.8 164 33.5
arahy.Tifrunner.gnm1.ann1.U98D8I Arachis hypogaea HOM05D000484 ORTHO05D000346 4.3e-07 60.5 155 34.8
CiPaw.14G007800 Carya illinoinensis HOM05D000484 ORTHO05D000346 4.3e-07 60.5 165 33.9
Duzib128G0146 Durio zibethinus HOM05D000484 ORTHO05D000346 4.3e-07 60.5 29 93.1
Glyma.02G163800 Glycine max HOM05D000484 ORTHO05D000346 4.3e-07 60.5 168 32.7
MD02G1285400 Malus domestica HOM05D000484 ORTHO05D000346 4.3e-07 60.5 152 32.9
CAN.G1045.35 Capsicum annuum HOM05D000484 ORTHO05D000346 5.6e-07 60.1 158 32.3
Duzib093G0524 Durio zibethinus HOM05D000484 ORTHO05D000346 5.6e-07 60.1 151 33.8
HanXRQChr03g0061541 Helianthus annuus HOM05D000484 ORTHO05D000346 5.6e-07 60.1 149 35.6
Prupe.2G037500 Prunus persica HOM05D000484 ORTHO05D000346 5.6e-07 60.1 150 33.3
THA.LOC104826728 Tarenaya hassleriana HOM05D000484 ORTHO05D000346 5.6e-07 60.1 151 33.1
Thecc.05G135100 Theobroma cacao HOM05D000484 ORTHO05D000346 5.6e-07 60.1 161 35.4
BcaB02g08340 Brassica carinata HOM05D000484 ORTHO05D000346 7.4e-07 59.7 165 34.5
A04p03640 Brassica napus HOM05D000484 ORTHO05D000346 7.4e-07 59.7 159 35.2
BraA04t16071Z Brassica rapa HOM05D000484 ORTHO05D000346 7.4e-07 59.7 159 35.2
MELO3C012475.2 Cucumis melo HOM05D000484 ORTHO05D000346 7.4e-07 59.7 158 27.2
CsaV3_5G036790 Cucumis sativus L. HOM05D000484 ORTHO05D000346 7.4e-07 59.7 158 27.2
Potri.016G036800 Populus trichocarpa HOM05D000484 ORTHO05D000346 7.4e-07 59.7 157 34.4
Sed0007711 Sechium edule HOM05D000484 ORTHO05D000346 7.4e-07 59.7 149 28.2
BcaB02g07632 Brassica carinata HOM05D000484 ORTHO05D000346 9.6e-07 59.3 159 35.2
CARHR167110 Cardamine hirsuta HOM05D000484 ORTHO05D000346 9.6e-07 59.3 162 33.3
CiPaw.09G047500 Carya illinoinensis HOM05D000484 ORTHO05D000346 9.6e-07 59.3 158 34.2
Migut.N01848 Erythranthe guttata HOM05D000484 ORTHO05D000346 9.6e-07 59.3 161 30.4
BcaC02g09882 Brassica carinata HOM05D000484 ORTHO05D000346 1.3e-06 58.9 159 35.2
C04p35590 Brassica napus HOM05D000484 ORTHO05D000346 1.3e-06 58.9 159 35.2
BolC4t25246H Brassica oleracea HOM05D000484 ORTHO05D000346 1.3e-06 58.9 159 35.2
Potri.001G027900 Populus trichocarpa HOM05D000484 ORTHO05D000346 1.3e-06 58.9 159 35.2
Carub.0004s2352 Capsella rubella HOM05D000484 ORTHO05D000346 1.6e-06 58.5 173 32.9
CiPaw.10G040000 Carya illinoinensis HOM05D000484 ORTHO05D000346 1.6e-06 58.5 160 34.4
Lj3g0019287 Lotus japonicus HOM05D000484 ORTHO05D000346 1.6e-06 58.5 157 33.8
Hund13362 Selenicereus undatus HOM05D000484 ORTHO05D000346 1.6e-06 58.5 148 30.4
TWI53G0613 Tripterygium wilfordii HOM05D000484 ORTHO05D000346 1.6e-06 58.5 154 33.1
Aqoxy1G00361 Aquilegia oxysepala HOM05D000484 ORTHO05D000346 2.1e-06 58.2 178 34.3
AUR62032646 Chenopodium quinoa HOM05D000484 ORTHO05D000346 2.1e-06 58.2 142 31.0
Peaxi162Scf00767g00520 Petunia axillaris HOM05D000484 ORTHO05D000346 2.1e-06 58.2 158 32.9
QL04p015972 Quercus lobata HOM05D000484 ORTHO05D000346 2.1e-06 58.2 168 32.1
QL04p016478 Quercus lobata HOM05D000484 ORTHO05D000346 2.1e-06 58.2 168 32.1
Atru.chr1.1443 Acer truncatum HOM05D000484 ORTHO05D000346 2.8e-06 57.8 153 31.4
AL4G39180 Arabidopsis lyrata HOM05D000484 ORTHO05D000346 2.8e-06 57.8 171 33.3
AUR62026858 Chenopodium quinoa HOM05D000484 ORTHO05D000346 2.8e-06 57.8 138 31.9
Thhalv10016282m.g Eutrema salsugineum HOM05D000484 ORTHO05D000346 2.8e-06 57.8 159 34.0
THA.LOC104819136 Tarenaya hassleriana HOM05D000484 ORTHO05D000346 2.8e-06 57.8 153 33.3
Eucgr.A02248 Eucalyptus grandis HOM05D000484 ORTHO05D000346 3.7e-06 57.4 164 34.8
PSO339G5362 Papaver somniferum HOM05D000484 ORTHO05D000346 3.7e-06 57.4 171 30.4
Psat5g222440 Pisum sativum HOM05D000484 ORTHO05D000346 3.7e-06 57.4 160 31.2
Ah.04g150950 Amaranthus hybridus HOM05D000484 ORTHO05D000346 4.8e-06 57.0 143 31.5
AT2G41210 Arabidopsis thaliana HOM05D000484 ORTHO05D000346 4.8e-06 57.0 171 33.3
BcaC01g05354 Brassica carinata HOM05D000484 ORTHO05D000346 4.8e-06 57.0 157 33.1
C03p27560 Brassica napus HOM05D000484 ORTHO05D000346 4.8e-06 57.0 157 33.1
BolC3t15129H Brassica oleracea HOM05D000484 ORTHO05D000346 4.8e-06 57.0 157 33.1
Ca_12975_v3 Cicer arietinum L. HOM05D000484 ORTHO05D000346 4.8e-06 57.0 155 34.2
Sp4g23510 Schrenkiella parvula HOM05D000484 ORTHO05D000346 4.8e-06 57.0 168 33.3
Ciclev10006414m.g Citrus clementina HOM05D000484 ORTHO05D000346 6.2e-06 56.6 65 47.7
Peaxi162Scf00076g00527 Petunia axillaris HOM05D000484 ORTHO05D000346 6.2e-06 56.6 29 89.7
Sed0009163 Sechium edule HOM05D000484 ORTHO05D000346 6.2e-06 56.6 164 33.5
AL3G19340 Arabidopsis lyrata HOM05D000484 ORTHO05D000346 8.1e-06 56.2 44 59.1
BcaB04g21261 Brassica carinata HOM05D000484 ORTHO05D000346 8.1e-06 56.2 44 59.1
BcaC09g47965 Brassica carinata HOM05D000484 ORTHO05D000346 8.1e-06 56.2 44 59.1
BolC1t05515H Brassica oleracea HOM05D000484 ORTHO05D000346 8.1e-06 56.2 44 59.1
BraA01t04349Z Brassica rapa HOM05D000484 ORTHO05D000346 8.1e-06 56.2 44 59.1
CANSAT64G2799 Cannabis sativa HOM05D000484 ORTHO05D000346 8.1e-06 56.2 181 29.3
Cc02_g29640 Coffea canephora HOM05D000484 ORTHO05D000346 8.1e-06 56.2 161 30.4
ECA248G2017 Erigeron canadensis HOM05D000484 ORTHO05D000346 8.1e-06 56.2 149 33.6
Thhalv10020133m.g Eutrema salsugineum HOM05D000484 ORTHO05D000346 8.1e-06 56.2 44 59.1
Phvul.011G206300 Phaseolus vulgaris HOM05D000484 ORTHO05D000346 8.1e-06 56.2 155 34.2
RcHm_v2.0_Chr2g0125511 Rosa chinensis HOM05D000484 ORTHO05D000346 8.1e-06 56.2 163 30.7
Sp3g06870 Schrenkiella parvula HOM05D000484 ORTHO05D000346 8.1e-06 56.2 44 59.1


User provided reference genes

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