Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0142400 Oryza sativa ssp. japonica HOM05D000302 ORTHO05D000334 2.8e-45 184.9 92 100.0
Os12g0138800 Oryza sativa ssp. japonica HOM05D000302 ORTHO05D000334 2.9e-18 95.1 92 60.9
Os11g0142300 Oryza sativa ssp. japonica HOM05D000302 ORTHO05D000334 2.8e-16 88.6 93 58.1
EL10Ac3g07199 Beta vulgaris HOM05D000302 ORTHO05D000334 3.8e-10 68.2 53 56.6
Hund24624 Selenicereus undatus HOM05D000302 ORTHO05D000334 5.0e-10 67.8 53 56.6
Gohir.D01G184600 Gossypium hirsutum HOM05D000302 ORTHO05D000334 4.3e-09 64.7 55 49.1
Gohir.A01G194200 Gossypium hirsutum HOM05D000302 ORTHO05D000334 5.6e-09 64.3 55 49.1
PGSC0003DMG401018893 Solanum tuberosum HOM05D000302 ORTHO05D000334 7.3e-09 63.9 53 54.7
Gorai.002G228000 Gossypium raimondii HOM05D000302 ORTHO05D000334 9.5e-09 63.5 55 47.3
Peaxi162Scf01010g00129 Petunia axillaris HOM05D000302 ORTHO05D000334 9.5e-09 63.5 61 50.8
Sed0027323 Sechium edule HOM05D000302 ORTHO05D000334 9.5e-09 63.5 90 40.0
ClCG10G016100 Citrullus lanatus HOM05D000302 ORTHO05D000334 1.2e-08 63.2 47 53.2
Phvul.010G019400 Phaseolus vulgaris HOM05D000302 ORTHO05D000334 1.2e-08 63.2 72 44.4
Cpa.g.sc5.214 Carica papaya HOM05D000302 ORTHO05D000334 1.6e-08 62.8 91 37.4
AUR62040834 Chenopodium quinoa HOM05D000302 ORTHO05D000334 1.6e-08 62.8 54 51.9
CSS0013824 Camellia sinensis var. sinensis HOM05D000302 ORTHO05D000334 2.1e-08 62.4 81 45.7
CARHR136370 Cardamine hirsuta HOM05D000302 ORTHO05D000334 2.1e-08 62.4 84 44.0
SEGI_01594 Sequoiadendron giganteum HOM05D000302 ORTHO05D000334 2.1e-08 62.4 69 43.5
Aa31LG10G11910 Aethionema arabicum HOM05D000302 ORTHO05D000334 2.8e-08 62.0 60 50.0
MSTRG.6375 Avicennia marina HOM05D000302 ORTHO05D000334 2.8e-08 62.0 56 51.8
CiPaw.09G046500 Carya illinoinensis HOM05D000302 ORTHO05D000334 2.8e-08 62.0 53 52.8
Duzib128G0841 Durio zibethinus HOM05D000302 ORTHO05D000334 2.8e-08 62.0 54 50.0
PGR031G3092 Punica granatum HOM05D000302 ORTHO05D000334 2.8e-08 62.0 62 45.2
CANSAT64G1755 Cannabis sativa HOM05D000302 ORTHO05D000334 4.7e-08 61.2 68 48.5
Cc06_g18950 Coffea canephora HOM05D000302 ORTHO05D000334 4.7e-08 61.2 93 37.6
Thhalv10016811m.g Eutrema salsugineum HOM05D000302 ORTHO05D000334 4.7e-08 61.2 90 38.9
Lj1A1099G43 Lonicera japonica HOM05D000302 ORTHO05D000334 4.7e-08 61.2 85 43.5
Lj1g0006320 Lotus japonicus HOM05D000302 ORTHO05D000334 4.7e-08 61.2 45 55.6
Sp4g23590 Schrenkiella parvula HOM05D000302 ORTHO05D000334 4.7e-08 61.2 90 37.8
AL4G39270 Arabidopsis lyrata HOM05D000302 ORTHO05D000334 6.1e-08 60.8 84 44.0
COL.COLO4_06434 Corchorus olitorius HOM05D000302 ORTHO05D000334 6.1e-08 60.8 46 56.5
TWI53G0579 Tripterygium wilfordii HOM05D000302 ORTHO05D000334 6.1e-08 60.8 58 46.6
Aa31LG3G730 Aethionema arabicum HOM05D000302 ORTHO05D000334 8.0e-08 60.5 54 51.9
CSS0017206 Camellia sinensis var. sinensis HOM05D000302 ORTHO05D000334 1.0e-07 60.1 93 41.9
Phvul.001G126000 Phaseolus vulgaris HOM05D000302 ORTHO05D000334 1.0e-07 60.1 87 39.1
SalBow6G2302 Salvia bowleyana HOM05D000302 ORTHO05D000334 1.0e-07 60.1 55 47.3
SalBow6G6535 Salvia bowleyana HOM05D000302 ORTHO05D000334 1.0e-07 60.1 55 47.3
Migut.J01667 Erythranthe guttata HOM05D000302 ORTHO05D000334 1.4e-07 59.7 52 50.0
Lsat_1_v5_gn_5_158440 Lactuca sativa HOM05D000302 ORTHO05D000334 1.4e-07 59.7 55 52.7
A03p23180 Brassica napus HOM05D000302 ORTHO05D000334 1.8e-07 59.3 90 37.8
C03p27650 Brassica napus HOM05D000302 ORTHO05D000334 1.8e-07 59.3 90 37.8
BraA03t11538Z Brassica rapa HOM05D000302 ORTHO05D000334 1.8e-07 59.3 90 37.8
MELO3C009768.2 Cucumis melo HOM05D000302 ORTHO05D000334 1.8e-07 59.3 86 39.5
Dinv34374 Davidia involucrata HOM05D000302 ORTHO05D000334 1.8e-07 59.3 93 40.9
Nitab4.5_0000515g0020 Nicotiana tabacum HOM05D000302 ORTHO05D000334 1.8e-07 59.3 89 43.8
BcaB01g03476 Brassica carinata HOM05D000302 ORTHO05D000334 2.3e-07 58.9 90 38.9
MELO3C005169.2 Cucumis melo HOM05D000302 ORTHO05D000334 2.3e-07 58.9 56 50.0
Glyma.03G130200 Glycine max HOM05D000302 ORTHO05D000334 2.3e-07 58.9 77 44.2
Nitab4.5_0002208g0060 Nicotiana tabacum HOM05D000302 ORTHO05D000334 2.3e-07 58.9 88 42.0
Sopen11g013260 Solanum pennellii HOM05D000302 ORTHO05D000334 2.3e-07 58.9 53 50.9
SGA_v2.0_scaffold105G30299 Striga asiatica HOM05D000302 ORTHO05D000334 2.3e-07 58.9 93 40.9
Carub.0004s2359 Capsella rubella HOM05D000302 ORTHO05D000334 3.0e-07 58.5 48 58.3
ECA248G3186 Erigeron canadensis HOM05D000302 ORTHO05D000334 3.0e-07 58.5 49 57.1
AT2G41290 Arabidopsis thaliana HOM05D000302 ORTHO05D000334 4.0e-07 58.2 85 43.5
BcaC01g05348 Brassica carinata HOM05D000302 ORTHO05D000334 4.0e-07 58.2 90 37.8
BolC3t15135H Brassica oleracea HOM05D000302 ORTHO05D000334 4.0e-07 58.2 90 37.8
Prupe.7G041300 Prunus persica HOM05D000302 ORTHO05D000334 4.0e-07 58.2 52 44.2
CsaV3_5G020010 Cucumis sativus L. HOM05D000302 ORTHO05D000334 5.2e-07 57.8 56 48.2
FvH4_7g24670 Fragaria vesca HOM05D000302 ORTHO05D000334 5.2e-07 57.8 48 52.1
FAN02G4550 Fragaria x ananassa HOM05D000302 ORTHO05D000334 5.2e-07 57.8 48 52.1
FAN06G4948 Fragaria x ananassa HOM05D000302 ORTHO05D000334 5.2e-07 57.8 48 52.1
Hma1.2p1_0553F.1_g177750 Hydrangea macrophylla HOM05D000302 ORTHO05D000334 5.2e-07 57.8 83 39.8
Nn2g14839 Nelumbo nucifera HOM05D000302 ORTHO05D000334 5.2e-07 57.8 55 49.1
Potri.016G037700 Populus trichocarpa HOM05D000302 ORTHO05D000334 5.2e-07 57.8 78 37.2
TPR.G39875 Trifolium pratense HOM05D000302 ORTHO05D000334 5.2e-07 57.8 76 42.1
CsaV3_3G040310 Cucumis sativus L. HOM05D000302 ORTHO05D000334 6.8e-07 57.4 46 52.2
DCAR_013637 Daucus carota HOM05D000302 ORTHO05D000334 6.8e-07 57.4 53 52.8
MD14G1085600 Malus domestica HOM05D000302 ORTHO05D000334 6.8e-07 57.4 99 33.3
Manes.08G055900 Manihot esculenta HOM05D000302 ORTHO05D000334 6.8e-07 57.4 90 36.7
Medtr7g090300 Medicago truncatula HOM05D000302 ORTHO05D000334 6.8e-07 57.4 41 65.9
VMungo1383G2002 Vigna mungo HOM05D000302 ORTHO05D000334 8.9e-07 57.0 82 41.5
A05p02190 Brassica napus HOM05D000302 ORTHO05D000334 1.2e-06 56.6 90 40.0
BraA05t19215Z Brassica rapa HOM05D000302 ORTHO05D000334 1.2e-06 56.6 90 40.0
Ciclev10005245m.g Citrus clementina HOM05D000302 ORTHO05D000334 1.2e-06 56.6 47 51.1
Haze_20201 Corylus avellana HOM05D000302 ORTHO05D000334 1.2e-06 56.6 54 48.1
Peaxi162Scf01010g00215 Petunia axillaris HOM05D000302 ORTHO05D000334 1.2e-06 56.6 94 39.4
TAR623G1232 Trochodendron aralioides HOM05D000302 ORTHO05D000334 1.2e-06 56.6 53 50.9
Cfa020018 Carpinus fangiana HOM05D000302 ORTHO05D000334 1.5e-06 56.2 84 38.1
Cc00_g15920 Coffea canephora HOM05D000302 ORTHO05D000334 1.5e-06 56.2 52 48.1
PGSC0003DMG400002959 Solanum tuberosum HOM05D000302 ORTHO05D000334 1.5e-06 56.2 46 56.5
BcaC02g12771 Brassica carinata HOM05D000302 ORTHO05D000334 2.6e-06 55.5 54 50.0
Psat3g077240 Pisum sativum HOM05D000302 ORTHO05D000334 2.6e-06 55.5 39 64.1
Potri.008G109966 Populus trichocarpa HOM05D000302 ORTHO05D000334 2.6e-06 55.5 73 45.2
Potri.T015518 Populus trichocarpa HOM05D000302 ORTHO05D000334 2.6e-06 55.5 73 45.2
Sabra08G0083600 Salix brachista HOM05D000302 ORTHO05D000334 2.6e-06 55.5 48 56.2
C04p02600 Brassica napus HOM05D000302 ORTHO05D000334 3.4e-06 55.1 90 40.0
BolC4t21903H Brassica oleracea HOM05D000302 ORTHO05D000334 3.4e-06 55.1 90 40.0
Lj1g0015702 Lotus japonicus HOM05D000302 ORTHO05D000334 3.4e-06 55.1 39 64.1
Medtr7g490350 Medicago truncatula HOM05D000302 ORTHO05D000334 3.4e-06 55.1 39 64.1
CDE09G0703 Ceratophyllum demersum HOM05D000302 ORTHO05D000334 4.4e-06 54.7 46 60.9
ClCG01G007430 Citrullus lanatus HOM05D000302 ORTHO05D000334 4.4e-06 54.7 53 47.2
Cc02_g28370 Coffea canephora HOM05D000302 ORTHO05D000334 4.4e-06 54.7 52 50.0
Migut.J01670 Erythranthe guttata HOM05D000302 ORTHO05D000334 4.4e-06 54.7 43 58.1
Sed0002978 Sechium edule HOM05D000302 ORTHO05D000334 4.4e-06 54.7 41 61.0
arahy.Tifrunner.gnm1.ann1.0US4Y3 Arachis hypogaea HOM05D000302 ORTHO05D000334 5.7e-06 54.3 51 51.0
arahy.Tifrunner.gnm1.ann1.L4XZUR Arachis hypogaea HOM05D000302 ORTHO05D000334 5.7e-06 54.3 51 51.0
Lalb_Chr25g0286901 Lupinus albus HOM05D000302 ORTHO05D000334 5.7e-06 54.3 44 54.5
MBI15_g18198_MAGBIO Magnolia biondii HOM05D000302 ORTHO05D000334 5.7e-06 54.3 47 53.2
Sed0001118 Sechium edule HOM05D000302 ORTHO05D000334 5.7e-06 54.3 39 61.5
TAR369G0813 Trochodendron aralioides HOM05D000302 ORTHO05D000334 5.7e-06 54.3 80 40.0
AT3G57030 Arabidopsis thaliana HOM05D000302 ORTHO05D000334 7.5e-06 53.9 35 68.6
Cc02_g28420 Coffea canephora HOM05D000302 ORTHO05D000334 7.5e-06 53.9 44 54.5
Cc04_g16960 Coffea canephora HOM05D000302 ORTHO05D000334 7.5e-06 53.9 45 51.1
FvH4_4g28630 Fragaria vesca HOM05D000302 ORTHO05D000334 7.5e-06 53.9 50 52.0
MBI13_g30133_MAGBIO Magnolia biondii HOM05D000302 ORTHO05D000334 7.5e-06 53.9 52 51.9
Nitab4.5_0009925g0010 Nicotiana tabacum HOM05D000302 ORTHO05D000334 7.5e-06 53.9 79 43.0
Sed0006793 Sechium edule HOM05D000302 ORTHO05D000334 7.5e-06 53.9 53 47.2
GSVIVG01026127001 Vitis vinifera HOM05D000302 ORTHO05D000334 7.5e-06 53.9 50 50.0
GSVIVG01033612001 Vitis vinifera HOM05D000302 ORTHO05D000334 7.5e-06 53.9 39 61.5
GSVIVG01034451001 Vitis vinifera HOM05D000302 ORTHO05D000334 7.5e-06 53.9 50 50.0
GSVIVG01034669001 Vitis vinifera HOM05D000302 ORTHO05D000334 7.5e-06 53.9 50 50.0
CSS0004723 Camellia sinensis var. sinensis HOM05D000302 ORTHO05D000334 9.8e-06 53.5 31 71.0
CSS0030692 Camellia sinensis var. sinensis HOM05D000302 ORTHO05D000334 9.8e-06 53.5 31 71.0
Ciclev10006247m.g Citrus clementina HOM05D000302 ORTHO05D000334 9.8e-06 53.5 46 54.3
MBI15_g38434_MAGBIO Magnolia biondii HOM05D000302 ORTHO05D000334 9.8e-06 53.5 47 53.2
RcHm_v2.0_Chr2g0125411 Rosa chinensis HOM05D000302 ORTHO05D000334 9.8e-06 53.5 46 50.0
Solyc04g040090.4 Solanum lycopersicum HOM05D000302 ORTHO05D000334 9.8e-06 53.5 46 54.3
Solyc10g079610.2 Solanum lycopersicum HOM05D000302 ORTHO05D000334 9.8e-06 53.5 78 42.3
Sopen04g016310 Solanum pennellii HOM05D000302 ORTHO05D000334 9.8e-06 53.5 46 54.3
GSVIVG01033611001 Vitis vinifera HOM05D000302 ORTHO05D000334 9.8e-06 53.5 95 36.8


User provided reference genes

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