Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 1.5e-182 642.9 354 100.0
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 5.0e-167 591.3 370 85.1
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 1.3e-154 550.1 370 78.1
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 4.3e-142 508.4 377 72.1
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 2.3e-127 459.5 374 65.0
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 1.5e-126 456.8 375 63.7
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 4.3e-126 455.3 378 63.2
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 7.3e-126 454.5 375 64.0
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.3e-125 453.8 378 63.2
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 2.1e-125 453.0 378 63.0
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 2.1e-125 453.0 378 63.2
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 6.2e-125 451.4 377 63.4
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.1e-124 450.7 378 63.0
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 1.4e-124 450.3 373 64.6
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 1.8e-124 449.9 375 61.9
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 2.4e-124 449.5 374 63.1
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 4.0e-124 448.7 375 62.7
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 4.0e-124 448.7 378 62.7
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 5.3e-124 448.4 378 63.5
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 1.2e-123 447.2 374 63.4
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 3.4e-123 445.7 376 63.8
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 3.4e-123 445.7 376 63.6
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 3.4e-123 445.7 376 63.6
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 3.4e-123 445.7 373 61.9
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 7.6e-123 444.5 374 62.6
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 7.6e-123 444.5 374 62.6
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 9.9e-123 444.1 374 62.6
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.3e-122 443.7 375 62.9
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 1.3e-122 443.7 374 62.6
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 2.2e-122 443.0 377 62.3
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 2.9e-122 442.6 377 61.8
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 4.9e-122 441.8 377 63.1
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 6.4e-122 441.4 378 61.9
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 1.4e-121 440.3 377 61.5
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 1.4e-121 440.3 378 61.6
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.9e-121 439.9 374 60.7
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 1.9e-121 439.9 374 62.6
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 2.4e-121 439.5 376 62.0
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 9.3e-121 437.6 374 60.4
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 9.3e-121 437.6 374 60.7
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.2e-120 437.2 378 62.2
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 2.1e-120 436.4 374 60.2
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 2.1e-120 436.4 375 61.9
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 2.1e-120 436.4 378 61.4
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 3.5e-120 435.6 375 62.4
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 4.6e-120 435.3 376 60.4
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.6e-120 435.3 373 60.9
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 7.9e-120 434.5 376 61.7
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 7.9e-120 434.5 373 60.9
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 7.9e-120 434.5 373 60.9
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 1.0e-119 434.1 364 62.1
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 1.0e-119 434.1 373 60.9
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 1.8e-119 433.3 376 60.9
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 1.8e-119 433.3 377 59.7
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 2.3e-119 433.0 376 60.6
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 3.0e-119 432.6 376 60.1
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 3.9e-119 432.2 375 60.5
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 5.1e-119 431.8 374 60.7
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 5.1e-119 431.8 377 60.2
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 6.7e-119 431.4 373 60.6
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 8.7e-119 431.0 377 60.7
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 8.7e-119 431.0 373 62.2
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 1.5e-118 430.3 376 60.4
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.5e-118 430.3 376 61.2
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 1.9e-118 429.9 375 59.2
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 2.5e-118 429.5 376 60.1
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 2.5e-118 429.5 379 59.9
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 3.3e-118 429.1 388 59.3
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 3.3e-118 429.1 371 60.1
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 3.3e-118 429.1 381 60.6
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 4.3e-118 428.7 376 60.4
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 5.6e-118 428.3 376 59.8
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 7.4e-118 427.9 378 61.1
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 1.3e-117 427.2 377 59.7
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.3e-117 427.2 380 60.8
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 1.3e-117 427.2 375 59.2
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 1.6e-117 426.8 376 60.1
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.1e-117 426.4 380 60.8
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 2.1e-117 426.4 376 60.1
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 3.7e-117 425.6 374 59.6
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 6.2e-117 424.9 422 55.9
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 4.0e-116 422.2 376 58.8
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 9.0e-116 421.0 373 59.0
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 9.0e-116 421.0 379 59.9
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 2.0e-115 419.9 373 59.2
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 3.4e-115 419.1 399 57.6
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 3.4e-115 419.1 376 58.2
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 7.6e-115 417.9 378 58.2
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 1.3e-114 417.2 377 59.2
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 2.9e-114 416.0 374 60.2
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 6.4e-114 414.8 376 58.2
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 6.4e-114 414.8 382 58.1
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 6.4e-114 414.8 377 57.8
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 8.4e-114 414.5 378 57.9
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 4.2e-113 412.1 374 57.8
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 4.2e-113 412.1 411 55.0
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 7.1e-113 411.4 382 57.3
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 1.6e-112 410.2 381 58.0
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 2.7e-112 409.5 376 58.5
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 2.7e-112 409.5 425 54.6
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 6.0e-112 408.3 372 57.5
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 1.8e-111 406.8 375 58.7
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 5.1e-111 405.2 375 57.3
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 2.8e-109 399.4 376 56.1
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 4.8e-109 398.7 353 62.0
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 4.0e-108 395.6 377 59.2
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 5.3e-108 395.2 377 56.0
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 6.5e-106 388.3 375 57.6
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.1e-105 387.5 370 55.9
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 1.1e-105 387.5 370 55.9
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 3.2e-105 386.0 376 56.4
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 3.2e-105 386.0 371 55.0
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 4.2e-105 385.6 372 55.1
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 5.5e-105 385.2 376 56.6
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 2.1e-104 383.3 403 52.6
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 2.7e-104 382.9 287 66.9
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 2.7e-104 382.9 304 63.5
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 5.1e-103 378.6 334 60.2
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 1.4e-97 360.5 388 52.1
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 3.2e-97 359.4 331 58.3
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.8e-93 346.3 373 51.7
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 2.8e-93 346.3 368 51.6
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 2.7e-88 329.7 372 47.3
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 2.7e-88 329.7 372 47.3
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.6e-88 329.3 491 41.5
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 1.3e-85 320.9 291 59.8
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 9.1e-84 314.7 412 46.8
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 4.8e-77 292.4 379 47.5
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.6e-75 286.6 413 45.0
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 8.5e-74 281.6 368 44.3
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 3.4e-62 243.0 378 40.2
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 1.7e-61 240.7 359 44.8
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 4.1e-60 236.1 331 45.3
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 3.5e-59 233.0 174 67.2
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 7.5e-54 215.3 378 40.2
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 1.6e-51 207.6 395 34.7
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.0e-51 207.2 274 45.3
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.1e-44 184.9 151 62.9
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 4.3e-41 172.9 276 42.4
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 8.6e-34 148.7 147 54.4
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 3.3e-25 120.2 74 73.0
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 8.1e-24 115.5 389 29.3
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 2.4e-20 104.0 77 64.9
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 1.7e-18 97.8 73 61.6
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 4.9e-13 79.7 342 24.6
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.2e-12 77.0 79 57.0
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 1.6e-11 74.7 420 23.3
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 2.3e-10 70.9 44 70.5
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 3.9e-10 70.1 398 23.4
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 2.1e-08 64.3 62 58.1
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 5.3e-07 59.7 42 69.0
C03p88580 Brassica napus HOM05D004576 ORTHO05D005321 1.5e-06 58.2 85 41.2
VMungo0464G1857 Vigna mungo HOM05D004576 ORTHO05D005321 2.0e-06 57.8 36 77.8
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 2.6e-06 57.4 76 52.6
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 9.9e-06 55.5 157 29.9


User provided reference genes

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