Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 8.7e-48 193.4 101 100.0
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 5.5e-26 120.9 62 98.4
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 1.1e-18 96.7 62 77.4
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 1.0e-16 90.1 62 71.0
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 1.8e-16 89.4 62 69.4
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 1.8e-16 89.4 62 69.4
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 1.8e-16 89.4 62 69.4
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 1.8e-16 89.4 62 69.4
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 3.9e-16 88.2 62 69.4
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 3.9e-16 88.2 62 69.4
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 3.9e-16 88.2 62 69.4
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 5.1e-16 87.8 62 67.7
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 6.7e-16 87.4 62 69.4
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 6.7e-16 87.4 62 67.7
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 1.5e-15 86.3 62 66.1
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 3.3e-15 85.1 62 69.4
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 4.4e-15 84.7 62 67.7
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 5.7e-15 84.3 62 66.1
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 7.4e-15 84.0 62 64.5
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 7.4e-15 84.0 62 66.1
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 9.7e-15 83.6 62 66.1
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 1.7e-14 82.8 62 64.5
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 1.7e-14 82.8 62 64.5
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 2.8e-14 82.0 62 64.5
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 2.8e-14 82.0 62 62.9
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 3.7e-14 81.6 62 62.9
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 4.8e-14 81.3 62 62.9
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 4.8e-14 81.3 62 62.9
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 6.3e-14 80.9 62 62.9
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 8.2e-14 80.5 62 66.1
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 8.2e-14 80.5 62 61.3
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 1.4e-13 79.7 62 64.5
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 1.4e-13 79.7 62 59.7
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 1.8e-13 79.3 62 64.5
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 2.4e-13 79.0 62 62.9
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 3.1e-13 78.6 62 61.3
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 3.1e-13 78.6 62 61.3
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 3.1e-13 78.6 62 61.3
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 4.1e-13 78.2 62 61.3
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 4.1e-13 78.2 62 62.9
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 4.1e-13 78.2 62 59.7
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 4.1e-13 78.2 56 67.9
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 5.3e-13 77.8 62 59.7
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 5.3e-13 77.8 62 61.3
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 5.3e-13 77.8 62 59.7
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 5.3e-13 77.8 62 59.7
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 5.3e-13 77.8 62 59.7
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 5.3e-13 77.8 62 61.3
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 5.3e-13 77.8 62 61.3
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 5.3e-13 77.8 62 61.3
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 7.0e-13 77.4 62 61.3
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 9.1e-13 77.0 68 57.4
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 9.1e-13 77.0 62 61.3
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 9.1e-13 77.0 62 58.1
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 9.1e-13 77.0 62 58.1
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 9.1e-13 77.0 62 58.1
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 9.1e-13 77.0 62 59.7
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 9.1e-13 77.0 62 59.7
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 9.1e-13 77.0 61 59.0
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 1.2e-12 76.6 61 60.7
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.2e-12 76.6 62 59.7
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 1.2e-12 76.6 62 59.7
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 1.2e-12 76.6 62 59.7
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 1.6e-12 76.3 62 58.1
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 1.6e-12 76.3 62 61.3
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 1.6e-12 76.3 62 58.1
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.6e-12 76.3 62 58.1
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.6e-12 76.3 62 58.1
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.6e-12 76.3 62 58.1
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 1.6e-12 76.3 62 59.7
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 1.6e-12 76.3 62 58.1
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 1.6e-12 76.3 62 62.9
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 1.6e-12 76.3 62 58.1
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 2.0e-12 75.9 62 58.1
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 2.0e-12 75.9 62 59.7
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 2.0e-12 75.9 62 58.1
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 2.6e-12 75.5 62 58.1
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 3.5e-12 75.1 62 59.7
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 3.5e-12 75.1 62 59.7
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 3.5e-12 75.1 62 58.1
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 4.5e-12 74.7 62 58.1
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 4.5e-12 74.7 62 59.7
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 4.5e-12 74.7 62 58.1
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 4.5e-12 74.7 62 58.1
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 5.9e-12 74.3 62 56.5
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 5.9e-12 74.3 62 58.1
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 5.9e-12 74.3 62 59.7
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 5.9e-12 74.3 62 56.5
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 7.7e-12 73.9 62 56.5
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 7.7e-12 73.9 62 58.1
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.0e-11 73.6 62 59.7
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 1.0e-11 73.6 61 55.7
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 1.0e-11 73.6 62 58.1
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.0e-11 73.6 62 51.6
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 1.3e-11 73.2 62 58.1
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 1.3e-11 73.2 62 58.1
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 2.2e-11 72.4 62 56.5
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 2.2e-11 72.4 62 56.5
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 2.9e-11 72.0 63 58.7
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 5.0e-11 71.2 61 52.5
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 6.5e-11 70.9 62 56.5
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 1.1e-10 70.1 62 56.5
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 2.5e-10 68.9 76 46.1
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 7.2e-10 67.4 62 51.6
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 1.2e-09 66.6 76 43.4
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 1.2e-09 66.6 61 54.1
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 6.1e-09 64.3 76 42.1
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 1.0e-08 63.5 52 55.8
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 1.8e-08 62.8 63 52.4
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 3.0e-08 62.0 77 45.5
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 3.0e-08 62.0 47 61.7
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 3.0e-08 62.0 76 40.8
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 7.5e-07 57.4 58 51.7


User provided reference genes

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