Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0138700 Oryza sativa ssp. japonica HOM05D007713 ORTHO05D009748 2.0e-231 805.4 416 100.0
Os12g0135200 Oryza sativa ssp. japonica HOM05D007713 ORTHO05D009748 4.8e-225 784.3 416 97.1
Zm00001eb196340 Zea mays HOM05D007713 ORTHO05D009748 5.9e-151 538.1 425 72.0
Gorai.001G132900 Gossypium raimondii HOM05D007713 ORTHO05D009748 2.2e-81 307.0 427 46.4
BolC9t53535H Brassica oleracea HOM05D007713 ORTHO05D009748 2.9e-81 306.6 425 46.4
Sopen11g029730 Solanum pennellii HOM05D007713 ORTHO05D009748 3.8e-81 306.2 431 44.5
BcaC04g23665 Brassica carinata HOM05D007713 ORTHO05D009748 8.5e-81 305.1 425 46.4
C09p06140 Brassica napus HOM05D007713 ORTHO05D009748 8.5e-81 305.1 425 46.4
Gohir.D07G123200 Gossypium hirsutum HOM05D007713 ORTHO05D009748 8.5e-81 305.1 427 46.1
Cfa009929 Carpinus fangiana HOM05D007713 ORTHO05D009748 1.4e-80 304.3 444 44.6
Thhalv10004305m.g Eutrema salsugineum HOM05D007713 ORTHO05D009748 1.9e-80 303.9 420 45.7
BcaB04g19704 Brassica carinata HOM05D007713 ORTHO05D009748 2.5e-80 303.5 425 45.6
A09p05580 Brassica napus HOM05D007713 ORTHO05D009748 2.5e-80 303.5 426 46.2
BraA09t36199Z Brassica rapa HOM05D007713 ORTHO05D009748 3.2e-80 303.1 425 45.9
Gohir.A07G118900 Gossypium hirsutum HOM05D007713 ORTHO05D009748 7.2e-80 302.0 425 45.9
Cpa.g.sc36.103 Carica papaya HOM05D007713 ORTHO05D009748 2.7e-79 300.1 430 44.9
TAR636G2738 Trochodendron aralioides HOM05D007713 ORTHO05D009748 2.7e-79 300.1 423 43.3
Hma1.2p1_0811F.1_g222080 Hydrangea macrophylla HOM05D007713 ORTHO05D009748 3.6e-79 299.7 432 43.3
Duzib168G2333 Durio zibethinus HOM05D007713 ORTHO05D009748 6.1e-79 298.9 424 45.3
Manes.02G135500 Manihot esculenta HOM05D007713 ORTHO05D009748 6.1e-79 298.9 428 43.9
Sp2g21080 Schrenkiella parvula HOM05D007713 ORTHO05D009748 6.1e-79 298.9 423 45.2
Thecc.09G252200 Theobroma cacao HOM05D007713 ORTHO05D009748 6.1e-79 298.9 427 46.4
AL6G38870 Arabidopsis lyrata HOM05D007713 ORTHO05D009748 1.8e-78 297.4 419 45.3
Dinv24613 Davidia involucrata HOM05D007713 ORTHO05D009748 6.7e-78 295.4 416 44.2
Carub.0006s2459 Capsella rubella HOM05D007713 ORTHO05D009748 1.5e-77 294.3 419 45.6
TAR633G2062 Trochodendron aralioides HOM05D007713 ORTHO05D009748 1.5e-77 294.3 426 43.4
Peaxi162Scf00978g00032 Petunia axillaris HOM05D007713 ORTHO05D009748 4.3e-77 292.7 422 44.3
CiPaw.12G120900 Carya illinoinensis HOM05D007713 ORTHO05D009748 7.4e-77 292.0 441 42.6
MBI19_g04340_MAGBIO Magnolia biondii HOM05D007713 ORTHO05D009748 9.7e-77 291.6 338 51.8
Actinidia06981 Actinidia chinensis HOM05D007713 ORTHO05D009748 1.6e-76 290.8 419 44.6
Rhsim13G0203800 Rhododendron simsii HOM05D007713 ORTHO05D009748 2.8e-76 290.0 477 41.1
TWI31G0070 Tripterygium wilfordii HOM05D007713 ORTHO05D009748 3.7e-76 289.7 423 43.5
CiPaw.13G147100 Carya illinoinensis HOM05D007713 ORTHO05D009748 4.8e-76 289.3 431 43.6
Phvul.006G018200 Phaseolus vulgaris HOM05D007713 ORTHO05D009748 4.8e-76 289.3 426 42.7
AT5G26960 Arabidopsis thaliana HOM05D007713 ORTHO05D009748 6.3e-76 288.9 421 44.2
Ah.06g194890 Amaranthus hybridus HOM05D007713 ORTHO05D009748 1.8e-75 287.3 419 44.9
Cc01_g07320 Coffea canephora HOM05D007713 ORTHO05D009748 4.1e-75 286.2 429 42.4
ECA233G2058 Erigeron canadensis HOM05D007713 ORTHO05D009748 6.9e-75 285.4 434 42.6
Haze_23294 Corylus avellana HOM05D007713 ORTHO05D009748 9.1e-75 285.0 392 45.4
SGA_v2.0_scaffold8G04513 Striga asiatica HOM05D007713 ORTHO05D009748 9.1e-75 285.0 431 43.6
Haze_23299 Corylus avellana HOM05D007713 ORTHO05D009748 2.0e-74 283.9 390 44.9
PGR119G2462 Punica granatum HOM05D007713 ORTHO05D009748 2.0e-74 283.9 434 43.3
Oeu047953.1 Olea europaea HOM05D007713 ORTHO05D009748 4.5e-74 282.7 421 43.5
Aa31LG11G9740 Aethionema arabicum HOM05D007713 ORTHO05D009748 1.0e-73 281.6 424 43.9
CSS0029086 Camellia sinensis var. sinensis HOM05D007713 ORTHO05D009748 1.3e-73 281.2 434 42.2
AUR62006574 Chenopodium quinoa HOM05D007713 ORTHO05D009748 1.7e-73 280.8 427 43.8
QL01p016194 Quercus lobata HOM05D007713 ORTHO05D009748 2.2e-73 280.4 445 42.5
CARHR186580 Cardamine hirsuta HOM05D007713 ORTHO05D009748 2.9e-73 280.0 422 43.4
Lj6g0023778 Lotus japonicus HOM05D007713 ORTHO05D009748 5.0e-73 279.3 425 44.7
Potri.009G066500 Populus trichocarpa HOM05D007713 ORTHO05D009748 6.5e-73 278.9 437 42.6
EL10Ac4g10074 Beta vulgaris HOM05D007713 ORTHO05D009748 1.1e-72 278.1 443 42.7
AUR62000228 Chenopodium quinoa HOM05D007713 ORTHO05D009748 1.1e-72 278.1 433 42.5
Atru.chr3.2844 Acer truncatum HOM05D007713 ORTHO05D009748 1.4e-72 277.7 431 45.2
VMungo0540G1337 Vigna mungo HOM05D007713 ORTHO05D009748 3.2e-72 276.6 420 42.6
ClCG03G014250 Citrullus lanatus HOM05D007713 ORTHO05D009748 1.2e-71 274.6 434 41.9
Potri.001G271900 Populus trichocarpa HOM05D007713 ORTHO05D009748 1.6e-71 274.2 434 42.6
PSO765G0028 Papaver somniferum HOM05D007713 ORTHO05D009748 3.6e-71 273.1 447 39.6
PSO349G0341 Papaver somniferum HOM05D007713 ORTHO05D009748 1.0e-70 271.6 449 39.6
Lsat_1_v5_gn_2_31700 Lactuca sativa HOM05D007713 ORTHO05D009748 6.7e-70 268.9 425 41.6
TPR.G11930 Trifolium pratense HOM05D007713 ORTHO05D009748 6.7e-70 268.9 428 41.6
Sabra16G0167200 Salix brachista HOM05D007713 ORTHO05D009748 2.6e-69 266.9 437 42.6
Solyc11g072080.1 Solanum lycopersicum HOM05D007713 ORTHO05D009748 2.6e-69 266.9 378 44.2
CsaV3_1G041980 Cucumis sativus L. HOM05D007713 ORTHO05D009748 4.4e-69 266.2 435 39.3
MELO3C015613.2 Cucumis melo HOM05D007713 ORTHO05D009748 5.7e-69 265.8 435 39.3
Glyma.20G045100 Glycine max HOM05D007713 ORTHO05D009748 9.7e-69 265.0 435 41.6
Lalb_Chr07g0188901 Lupinus albus HOM05D007713 ORTHO05D009748 1.7e-68 264.2 427 40.3
PGSC0003DMG400027417 Solanum tuberosum HOM05D007713 ORTHO05D009748 1.7e-68 264.2 419 42.7
Sed0009065 Sechium edule HOM05D007713 ORTHO05D009748 1.8e-67 260.8 442 39.6
HanXRQChr03g0080051 Helianthus annuus HOM05D007713 ORTHO05D009748 9.1e-67 258.5 435 39.8
Ca_26656_v3 Cicer arietinum L. HOM05D007713 ORTHO05D009748 2.2e-65 253.8 430 40.2
Medtr3g045210 Medicago truncatula HOM05D007713 ORTHO05D009748 5.0e-65 252.7 428 39.3
Aqoxy1G02561 Aquilegia oxysepala HOM05D007713 ORTHO05D009748 6.5e-65 252.3 438 37.9
GSVIVG01037395001 Vitis vinifera HOM05D007713 ORTHO05D009748 2.0e-61 240.7 322 47.5
Ciclev10015393m.g Citrus clementina HOM05D007713 ORTHO05D009748 1.7e-60 237.7 425 38.8
Nitab4.5_0002567g0140 Nicotiana tabacum HOM05D007713 ORTHO05D009748 2.2e-57 227.3 260 50.0
THA.LOC104805019 Tarenaya hassleriana HOM05D007713 ORTHO05D009748 8.5e-57 225.3 430 39.3
Lj2P811T4 Lonicera japonica HOM05D007713 ORTHO05D009748 1.5e-56 224.6 258 51.9
COL.COLO4_33248 Corchorus olitorius HOM05D007713 ORTHO05D009748 4.2e-56 223.0 284 47.2
Nitab4.5_0002161g0070 Nicotiana tabacum HOM05D007713 ORTHO05D009748 4.2e-56 223.0 260 50.0
Nn7g36950 Nelumbo nucifera HOM05D007713 ORTHO05D009748 3.7e-52 209.9 306 44.4
Sc16g0010880 Simmondsia chinensis HOM05D007713 ORTHO05D009748 4.7e-47 193.0 236 49.6
Migut.D00708 Erythranthe guttata HOM05D007713 ORTHO05D009748 4.5e-42 176.4 414 35.3
SMO116G0438 Selaginella moellendorffii HOM05D007713 ORTHO05D009748 4.5e-42 176.4 415 34.7
Mapoly0014s0086 Marchantia polymorpha HOM05D007713 ORTHO05D009748 5.0e-41 172.9 393 31.3
SEGI_20329 Sequoiadendron giganteum HOM05D007713 ORTHO05D009748 5.0e-41 172.9 395 30.4
SEGI_24675 Sequoiadendron giganteum HOM05D007713 ORTHO05D009748 5.0e-41 172.9 441 32.7
Pp3c12_25210 Physcomitrium patens HOM05D007713 ORTHO05D009748 1.2e-39 168.3 395 31.4
Pp3c4_2880 Physcomitrium patens HOM05D007713 ORTHO05D009748 1.4e-38 164.9 410 30.7
HPP92_018395 Vanilla planifolia HOM05D007713 ORTHO05D009748 1.2e-34 151.8 149 55.7
CAN.G280.7 Capsicum annuum HOM05D007713 ORTHO05D009748 9.8e-29 132.1 424 31.8
ATR0307G040 Amborella trichopoda HOM05D007713 ORTHO05D009748 7.0e-27 125.9 482 27.8
unitig_736.g22903 Utricularia gibba HOM05D007713 ORTHO05D009748 3.9e-17 93.6 205 38.5
CBR_g38018 Chara braunii HOM05D000667 ORTHO05D003843 4.0e-14 83.6 264 29.9
Hund06081 Selenicereus undatus HOM05D000667 ORTHO05D003843 1.9e-11 74.7 216 31.5
CBR_g37301 Chara braunii HOM05D000667 ORTHO05D003095 2.1e-10 71.2 234 27.8
Zm00001eb241600 Zea mays HOM05D000667 ORTHO05D003843 1.3e-09 68.6 257 31.1
MBI07_g22517_MAGBIO Magnolia biondii HOM05D001337 ORTHO05D001281 2.3e-09 67.8 271 28.8
BcaB01g01987 Brassica carinata HOM05D006360 ORTHO05D008045 3.9e-09 67.0 244 30.7
Sabra10G0046400 Salix brachista HOM05D000667 ORTHO05D003843 5.1e-09 66.6 204 27.9
THA.LOC104807883 Tarenaya hassleriana HOM05D000667 ORTHO05D003843 5.1e-09 66.6 208 30.8
BolC9t53176H Brassica oleracea HOM05D002999 ORTHO05D003137 6.6e-09 66.2 244 31.1
SGA_v2.0_scaffold87G27145 Striga asiatica HOM05D000667 ORTHO05D003843 6.6e-09 66.2 264 29.5
A09p02350 Brassica napus HOM05D006360 ORTHO05D008045 1.1e-08 65.5 244 30.3
AT1G67480 Arabidopsis thaliana HOM05D000667 ORTHO05D003843 1.9e-08 64.7 218 28.0
BcaB01g01932 Brassica carinata HOM05D006360 ORTHO05D008045 1.9e-08 64.7 245 30.6
Eucgr.B03615 Eucalyptus grandis HOM05D001337 ORTHO05D001281 3.3e-08 63.9 271 32.1
Cc11_g16820 Coffea canephora HOM05D000667 ORTHO05D003843 4.3e-08 63.5 215 26.5
MBI05_g43695_MAGBIO Magnolia biondii HOM05D000249 ORTHO05D000206 4.3e-08 63.5 182 32.4
MBI05_g43694_MAGBIO Magnolia biondii HOM05D000249 ORTHO05D000206 5.6e-08 63.2 184 33.2
Sabra13G0090200 Salix brachista HOM05D000667 ORTHO05D003843 5.6e-08 63.2 216 27.3
arahy.Tifrunner.gnm1.ann1.KI1H7A Arachis hypogaea HOM05D000667 ORTHO05D003843 7.3e-08 62.8 211 26.1
arahy.Tifrunner.gnm1.ann1.WH7KQ6 Arachis hypogaea HOM05D000667 ORTHO05D003843 7.3e-08 62.8 211 26.1
Os06g0594400 Oryza sativa ssp. japonica HOM05D001337 ORTHO05D001281 7.3e-08 62.8 295 29.2
Ah.03g136250 Amaranthus hybridus HOM05D000667 ORTHO05D003843 9.5e-08 62.4 259 26.3
arahy.Tifrunner.gnm1.ann1.QM7S8Y Arachis hypogaea HOM05D000667 ORTHO05D003843 9.5e-08 62.4 211 26.1
BcaNung05812 Brassica carinata HOM05D000249 ORTHO05D000206 9.5e-08 62.4 229 30.1
C09p02460 Brassica napus HOM05D002999 ORTHO05D003137 9.5e-08 62.4 244 30.3
BolC1t00061H Brassica oleracea HOM05D000249 ORTHO05D000206 9.5e-08 62.4 229 30.1
Gohir.A12G148500 Gossypium hirsutum HOM05D000667 ORTHO05D003843 1.2e-07 62.0 216 28.2
Sed0026806 Sechium edule HOM05D007183 ORTHO05D008829 1.2e-07 62.0 93 40.9
HPP92_023194 Vanilla planifolia HOM05D000667 ORTHO05D003843 1.2e-07 62.0 206 29.1
Pp3c22_21630 Physcomitrium patens HOM05D000667 ORTHO05D003843 1.6e-07 61.6 228 26.8
Duzib248G1149 Durio zibethinus HOM05D000667 ORTHO05D003843 2.8e-07 60.8 210 26.2
Carub.0005s0538 Capsella rubella HOM05D000614 ORTHO05D000463 3.6e-07 60.5 218 28.9
SMO293G0012 Selaginella moellendorffii HOM05D000667 ORTHO05D003843 3.6e-07 60.5 191 29.3
DCAR_031193 Daucus carota HOM05D000667 ORTHO05D003843 4.7e-07 60.1 219 26.9
HanXRQChr05g0140521 Helianthus annuus HOM05D007183 ORTHO05D008829 4.7e-07 60.1 117 33.3
MBI10_g06571_MAGBIO Magnolia biondii HOM05D001337 ORTHO05D001281 4.7e-07 60.1 270 29.6
SEGI_10708 Sequoiadendron giganteum HOM05D000667 ORTHO05D003095 6.2e-07 59.7 273 27.1
Thhalv10004304m.g Eutrema salsugineum HOM05D000614 ORTHO05D000463 8.1e-07 59.3 204 29.9
Lj1P550T16 Lonicera japonica HOM05D000667 ORTHO05D002614 8.1e-07 59.3 229 26.6
SMO343G0007 Selaginella moellendorffii HOM05D000667 ORTHO05D008829 8.1e-07 59.3 221 28.5
TWI18G0116 Tripterygium wilfordii HOM05D006360 ORTHO05D008045 8.1e-07 59.3 233 30.0
BolC8t52002H Brassica oleracea HOM05D000667 ORTHO05D003095 1.1e-06 58.9 220 30.0
CDE06G0260 Ceratophyllum demersum HOM05D006360 ORTHO05D008045 1.1e-06 58.9 227 27.8
Mapoly0096s0062 Marchantia polymorpha HOM05D000667 ORTHO05D003095 1.1e-06 58.9 219 28.3
TWI12G0559 Tripterygium wilfordii HOM05D006360 ORTHO05D008045 1.1e-06 58.9 235 28.5
Zm00001eb168220 Zea mays HOM05D001337 ORTHO05D001281 1.1e-06 58.9 383 28.2
Ca_08615_v3 Cicer arietinum L. HOM05D003852 ORTHO05D003095 1.4e-06 58.5 220 29.5
Ca_08623_v3 Cicer arietinum L. HOM05D003852 ORTHO05D003095 1.4e-06 58.5 220 29.5
Haze_14864 Corylus avellana HOM05D000614 ORTHO05D000463 1.4e-06 58.5 216 28.2
HanXRQChr14g0450711 Helianthus annuus HOM05D000614 ORTHO05D000463 1.4e-06 58.5 198 28.8
Potri.013G104300 Populus trichocarpa HOM05D000667 ORTHO05D003843 1.4e-06 58.5 196 26.0
AT3G46050 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 1.8e-06 58.2 183 29.5
PSO017G3537 Papaver somniferum HOM05D000667 ORTHO05D003843 1.8e-06 58.2 222 27.9
PSO478G3524 Papaver somniferum HOM05D000667 ORTHO05D003843 1.8e-06 58.2 222 27.9
Sp7g36330 Schrenkiella parvula HOM05D000249 ORTHO05D000206 1.8e-06 58.2 239 27.2
BcaNung05811 Brassica carinata HOM05D000249 ORTHO05D000206 2.4e-06 57.8 219 27.4
C08p44570 Brassica napus HOM05D001040 ORTHO05D002795 2.4e-06 57.8 220 30.0
AL5G16260 Arabidopsis lyrata HOM05D000614 ORTHO05D000463 3.1e-06 57.4 217 28.6
CSS0006301 Camellia sinensis var. sinensis HOM05D000667 ORTHO05D003843 3.1e-06 57.4 215 26.0
CSS0017115 Camellia sinensis var. sinensis HOM05D000667 ORTHO05D003843 3.1e-06 57.4 215 26.0
SGA_v2.0_scaffold9G04757 Striga asiatica HOM05D000667 ORTHO05D003843 3.1e-06 57.4 212 29.2
HPP92_007589 Vanilla planifolia HOM05D001337 ORTHO05D001281 3.1e-06 57.4 396 26.5
CARHR148350 Cardamine hirsuta HOM05D000614 ORTHO05D000463 4.0e-06 57.0 204 30.4
TWI74G1430 Tripterygium wilfordii HOM05D000249 ORTHO05D000206 4.0e-06 57.0 191 34.0
BolC1t00060H Brassica oleracea HOM05D000249 ORTHO05D000206 5.2e-06 56.6 220 27.3
HanXRQChr15g0484381 Helianthus annuus HOM05D000249 ORTHO05D000206 5.2e-06 56.6 192 30.7
TWI18G0015 Tripterygium wilfordii HOM05D000667 ORTHO05D003843 5.2e-06 56.6 210 24.8
AT3G27150 Arabidopsis thaliana HOM05D000614 ORTHO05D000463 6.8e-06 56.2 209 29.2
Phvul.001G153400 Phaseolus vulgaris HOM05D003852 ORTHO05D003095 6.8e-06 56.2 220 30.0
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 8.9e-06 55.8 352 26.4
Lj2g0027087 Lotus japonicus HOM05D003852 ORTHO05D003095 8.9e-06 55.8 220 29.5


User provided reference genes

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