Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 2134.4 1110 100.0
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 0.0e+00 1772.3 1109 81.2
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 0.0e+00 1382.1 1120 63.5
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 0.0e+00 1377.5 1109 63.6
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 0.0e+00 1365.5 1118 63.5
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 0.0e+00 1336.2 1119 61.8
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 1335.1 1116 61.3
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 0.0e+00 1334.3 1114 61.4
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 0.0e+00 1333.2 1117 61.8
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 0.0e+00 1326.6 1115 60.9
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 0.0e+00 1323.9 1124 60.7
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 0.0e+00 1320.4 1117 60.5
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 0.0e+00 1317.8 1127 61.4
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 0.0e+00 1313.5 1119 61.1
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 0.0e+00 1310.0 1114 60.0
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 0.0e+00 1310.0 1185 58.2
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 0.0e+00 1309.3 1116 60.0
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 0.0e+00 1307.7 1121 60.5
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 0.0e+00 1306.6 1108 59.7
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 0.0e+00 1306.6 1123 60.2
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 0.0e+00 1305.4 1120 60.3
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 0.0e+00 1303.9 1172 58.0
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 0.0e+00 1300.8 1127 59.7
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 0.0e+00 1297.7 1113 59.6
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 0.0e+00 1297.3 1111 58.9
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 0.0e+00 1297.0 1119 60.4
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 1295.4 1115 59.6
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 0.0e+00 1294.6 1114 60.0
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 0.0e+00 1294.3 1109 59.2
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 0.0e+00 1294.3 1115 59.5
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 0.0e+00 1293.5 1106 59.1
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 1293.5 1115 59.6
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 1292.3 1115 59.7
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 0.0e+00 1290.8 1118 58.5
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 0.0e+00 1288.9 1119 59.7
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 1287.7 1119 59.7
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 0.0e+00 1286.2 1120 58.5
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 0.0e+00 1285.4 1108 59.0
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 0.0e+00 1284.6 1122 60.1
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 0.0e+00 1283.5 1119 59.7
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 0.0e+00 1280.8 1118 59.5
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 1280.8 1116 59.1
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 0.0e+00 1280.8 1112 59.6
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 1279.2 1114 58.8
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 0.0e+00 1277.7 1110 59.3
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 0.0e+00 1277.3 1117 58.0
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 1276.5 1118 59.6
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 1274.2 1112 59.4
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 1269.6 1118 59.0
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 1269.2 1130 58.2
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 0.0e+00 1269.2 1108 58.0
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 1266.9 1115 59.2
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 1266.5 1121 58.4
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 0.0e+00 1265.4 1143 57.7
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 0.0e+00 1265.0 1116 58.9
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 0.0e+00 1263.4 1158 57.9
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 0.0e+00 1262.3 1118 58.8
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 1260.7 1115 58.5
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 0.0e+00 1260.0 1118 58.8
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 0.0e+00 1259.2 1122 57.0
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 0.0e+00 1258.0 1116 58.2
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 0.0e+00 1257.7 1120 58.0
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 0.0e+00 1256.9 1120 58.2
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 0.0e+00 1256.5 1138 57.7
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 1253.4 1139 57.4
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 1252.7 1145 57.5
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 0.0e+00 1252.7 1113 57.1
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 1251.5 1145 57.3
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 0.0e+00 1251.1 1115 58.4
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 0.0e+00 1248.8 1127 58.0
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 0.0e+00 1246.9 1137 57.3
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 0.0e+00 1246.5 1146 57.0
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 0.0e+00 1240.7 1131 57.7
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 0.0e+00 1234.9 1107 57.6
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 1233.0 1116 57.5
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1174.1 1112 55.8
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 0.0e+00 1160.6 1176 52.5
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 0.0e+00 1135.9 1666 41.6
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 1.6e-299 1033.1 1165 47.8
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 1.5e-294 1016.5 804 64.1
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 2.8e-288 995.7 1166 46.1
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 1.4e-287 993.4 829 59.8
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 1.2e-286 990.3 685 78.0
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 3.5e-283 978.8 1173 45.5
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 1.8e-279 966.5 802 61.1
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 5.8e-278 961.4 1147 46.6
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 2.4e-276 956.1 1007 52.8
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 1.9e-265 919.8 780 60.5
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 4.5e-238 828.9 698 61.6
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 3.8e-237 825.9 700 59.6
HPP92_022829 Vanilla planifolia HOM05D004500 ORTHO05D005775 2.7e-227 793.1 797 54.1
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 2.5e-204 716.8 1119 39.2
CBR_g37490 Chara braunii HOM05D004500 ORTHO05D005775 2.8e-195 686.8 1175 36.0
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 1.2e-193 681.4 608 58.7
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 8.9e-186 655.2 603 57.9
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 5.0e-181 639.4 601 56.1
SEGI_14316 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.4e-170 604.7 661 48.6
Cpa.g.sc34.186 Carica papaya HOM05D004500 ORTHO05D005775 6.8e-170 602.4 496 62.7
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 8.9e-162 575.5 481 61.7
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 1.2e-161 575.1 1233 33.4
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.3e-152 545.0 502 55.8
Psat7g231400 Pisum sativum HOM05D004500 ORTHO05D005775 2.9e-152 543.9 527 55.6
VMungo0647G1179 Vigna mungo HOM05D004500 ORTHO05D005775 2.9e-152 543.9 451 60.5
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 8.4e-152 542.3 1231 31.9
COL.COLO4_06618 Corchorus olitorius HOM05D004500 ORTHO05D005775 1.4e-151 541.6 455 60.0
CDE02G2423 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 5.8e-145 519.6 607 47.9
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 1.6e-142 511.5 390 65.1
Haze_23272 Corylus avellana HOM05D004500 ORTHO05D005775 3.3e-132 477.2 457 57.3
Psat7g231320 Pisum sativum HOM05D004500 ORTHO05D005775 8.2e-131 472.6 427 59.0
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 2.4e-114 417.9 207 100.0
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 1.3e-107 395.6 824 33.6
FAN21G2043 Fragaria x ananassa HOM05D004500 ORTHO05D005775 1.2e-100 372.5 370 53.2
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 1.4e-98 365.5 1688 24.6
Psat6g216840 Pisum sativum HOM05D004500 ORTHO05D005775 1.1e-95 355.9 223 75.3
Peaxi162Scf00029g02523 Petunia axillaris HOM05D004500 ORTHO05D005775 2.8e-83 314.7 290 55.5
Solyc11g062320.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 6.3e-83 313.5 286 55.9
Nitab4.5_0002026g0160 Nicotiana tabacum HOM05D004500 ORTHO05D005775 1.0e-80 306.2 288 55.9
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 3.1e-61 241.5 338 45.0
SEGI_21027 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 3.5e-57 228.0 206 55.3
Hma1.2p1_0460F.1_g157660 Hydrangea macrophylla HOM05D004500 ORTHO05D005775 2.0e-52 212.2 195 55.9
vmacro04082 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 7.1e-50 203.8 112 83.9
Gohir.A09G108566 Gossypium hirsutum HOM05D004500 ORTHO05D005775 5.6e-47 194.1 162 57.4
Cfa026787 Carpinus fangiana HOM05D004500 ORTHO05D005775 4.9e-43 181.0 1091 22.7
Thhalv10012226m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 1.3e-38 166.4 337 36.8
EL10Ac5g11937 Beta vulgaris HOM05D004500 ORTHO05D005775 3.6e-38 164.9 201 47.8
PSO339G2400 Papaver somniferum HOM05D004500 ORTHO05D005775 8.1e-38 163.7 288 38.9
Psat6g216720 Pisum sativum HOM05D004500 ORTHO05D005775 1.8e-37 162.5 110 70.9
BcaC01g01445 Brassica carinata HOM05D004500 ORTHO05D005775 6.7e-32 144.1 147 51.7
vmacro04083 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 3.3e-31 141.7 144 53.5
Psat5g143880 Pisum sativum HOM05D004500 ORTHO05D001434 1.3e-30 139.8 176 47.7
Psat0s1467g0200 Pisum sativum HOM05D004500 ORTHO05D005775 1.6e-30 139.4 176 47.7
Psat2g099920 Pisum sativum HOM05D001218 ORTHO05D015696 2.5e-23 115.5 86 61.6
Lj1A1068G47 Lonicera japonica HOM05D004500 ORTHO05D005775 4.3e-23 114.8 77 75.3
Psat2g090360 Pisum sativum HOM05D001218 ORTHO05D015696 8.2e-22 110.5 75 69.3
Lj1A1068G46 Lonicera japonica HOM05D001538 ORTHO05D011045 4.5e-20 104.8 131 47.3
HPP92_022828 Vanilla planifolia HOM05D004500 ORTHO05D005775 2.9e-19 102.1 82 64.6
SEGI_00784 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 3.0e-16 92.0 83 50.6
SEGI_03367 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 3.0e-16 92.0 155 35.5
SEGI_16541 Sequoiadendron giganteum HOM05D004500 ORTHO05D011045 9.0e-13 80.5 56 62.5
EL10Ac5g12062 Beta vulgaris HOM05D004500 ORTHO05D005775 9.4e-10 70.5 59 57.6
SEGI_07125 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 3.6e-09 68.6 118 38.1
Psat0s2295g0160 Pisum sativum HOM05D003609 ORTHO05D004185 6.3e-06 57.8 202 30.2


User provided reference genes

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