Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0136701 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 3.3e-29 131.0 63 100.0
Os12g0133600 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 3.7e-28 127.5 63 96.8
CSS0035024 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 1.6e-20 102.1 60 76.7
CAN.G960.60 Capsicum annuum HOM05D007733 ORTHO05D009786 3.7e-20 100.9 60 78.3
PGSC0003DMG401008361 Solanum tuberosum HOM05D007733 ORTHO05D009786 4.8e-20 100.5 60 78.3
Solyc10g078420.2 Solanum lycopersicum HOM05D007733 ORTHO05D009786 1.8e-19 98.6 60 76.7
Peaxi162Scf00696g00026 Petunia axillaris HOM05D007733 ORTHO05D009786 2.4e-19 98.2 52 82.7
MD00G1018100 Malus domestica HOM05D007733 ORTHO05D009786 3.1e-19 97.8 56 78.6
Oeu063785.1 Olea europaea HOM05D007733 ORTHO05D009786 4.1e-19 97.4 57 78.9
Sed0021033 Sechium edule HOM05D007733 ORTHO05D009786 6.9e-19 96.7 51 82.4
Glyma.12G186000 Glycine max HOM05D007733 ORTHO05D009786 1.2e-18 95.9 57 77.2
BcaB05g21564 Brassica carinata HOM05D007733 ORTHO05D009786 1.5e-18 95.5 62 71.0
CiPaw.09G048000 Carya illinoinensis HOM05D007733 ORTHO05D009786 1.5e-18 95.5 62 69.4
CsaV3_4G029620 Cucumis sativus L. HOM05D007733 ORTHO05D009786 1.5e-18 95.5 51 80.4
Lalb_Chr06g0173691 Lupinus albus HOM05D007733 ORTHO05D009786 1.5e-18 95.5 57 77.2
Prupe.7G032300 Prunus persica HOM05D007733 ORTHO05D009786 1.5e-18 95.5 56 75.0
BcaC03g13244 Brassica carinata HOM05D007733 ORTHO05D009786 2.0e-18 95.1 55 78.2
C02p03760 Brassica napus HOM05D007733 ORTHO05D009786 2.0e-18 95.1 55 78.2
BolC2t06337H Brassica oleracea HOM05D007733 ORTHO05D009786 2.0e-18 95.1 55 78.2
MELO3C019082.2 Cucumis melo HOM05D007733 ORTHO05D009786 2.0e-18 95.1 51 80.4
MD12G1095600 Malus domestica HOM05D007733 ORTHO05D009786 2.0e-18 95.1 55 76.4
CDE04G2892 Ceratophyllum demersum HOM05D007733 ORTHO05D009786 2.6e-18 94.7 51 80.4
Hma1.2p1_0757F.1_g213300 Hydrangea macrophylla HOM05D007733 ORTHO05D009786 3.4e-18 94.4 57 75.4
Glyma.13G315500 Glycine max HOM05D007733 ORTHO05D009786 4.5e-18 94.0 57 75.4
BraA02t04971Z Brassica rapa HOM05D007733 ORTHO05D009786 5.9e-18 93.6 52 80.8
Sp6g34080 Schrenkiella parvula HOM05D007733 ORTHO05D009786 5.9e-18 93.6 55 76.4
Thecc.01G129600 Theobroma cacao HOM05D007733 ORTHO05D009786 7.6e-18 93.2 52 80.8
SGA_v2.0_scaffold3G01720 Striga asiatica HOM05D007733 ORTHO05D009786 1.3e-17 92.4 56 75.0
CARHR204200 Cardamine hirsuta HOM05D007733 ORTHO05D009786 1.7e-17 92.0 55 74.5
Atru.chr1.1436 Acer truncatum HOM05D007733 ORTHO05D009786 2.2e-17 91.7 51 76.5
AL6G19610 Arabidopsis lyrata HOM05D007733 ORTHO05D009786 2.2e-17 91.7 55 74.5
TWI74G1577 Tripterygium wilfordii HOM05D007733 ORTHO05D009786 2.2e-17 91.7 62 69.4
AT5G09225 Arabidopsis thaliana HOM05D007733 ORTHO05D009786 3.8e-17 90.9 55 74.5
Aa31LG1G18010 Aethionema arabicum HOM05D007733 ORTHO05D009786 5.0e-17 90.5 61 70.5
Thhalv10015230m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 5.0e-17 90.5 55 74.5
Phvul.005G122800 Phaseolus vulgaris HOM05D007733 ORTHO05D009786 5.0e-17 90.5 57 73.7
THA.LOC104819346 Tarenaya hassleriana HOM05D007733 ORTHO05D009786 5.0e-17 90.5 52 75.0
Carub.0006s0778 Capsella rubella HOM05D007733 ORTHO05D009786 8.5e-17 89.7 55 72.7
Cc06_g19360 Coffea canephora HOM05D007733 ORTHO05D009786 8.5e-17 89.7 54 72.2
SGA_v2.0_scaffold105G30286 Striga asiatica HOM05D007733 ORTHO05D009786 8.5e-17 89.7 51 80.4
arahy.Tifrunner.gnm1.ann1.2TE5XM Arachis hypogaea HOM05D007733 ORTHO05D009786 1.1e-16 89.4 59 74.6
CSS0016184 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 1.4e-16 89.0 60 66.7
CSS0036430 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 1.4e-16 89.0 60 66.7
Duzib264G0681 Durio zibethinus HOM05D007733 ORTHO05D009786 1.4e-16 89.0 52 78.8
FAN06G4775 Fragaria x ananassa HOM05D007733 ORTHO05D009786 1.4e-16 89.0 58 67.2
FAN10G3322 Fragaria x ananassa HOM05D000072 ORTHO05D000026 1.4e-16 89.0 58 67.2
PSO384G4410 Papaver somniferum HOM05D007733 ORTHO05D009786 1.4e-16 89.0 57 71.9
Manes.01G136000 Manihot esculenta HOM05D007733 ORTHO05D009786 3.2e-16 87.8 51 74.5
Migut.J01653 Erythranthe guttata HOM05D007733 ORTHO05D009786 4.2e-16 87.4 51 76.5
Thhalv10005241m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 4.2e-16 87.4 63 65.1
Gohir.A11G247101 Gossypium hirsutum HOM05D007733 ORTHO05D009786 4.2e-16 87.4 50 78.0
Psat4g102040 Pisum sativum HOM05D007733 ORTHO05D009786 4.2e-16 87.4 51 80.4
Potri.016G036400 Populus trichocarpa HOM05D007733 ORTHO05D009786 4.2e-16 87.4 51 74.5
FAN03G1257 Fragaria x ananassa HOM05D000072 ORTHO05D000026 5.5e-16 87.0 51 74.5
RcHm_v2.0_Chr1g0328411 Rosa chinensis HOM05D007733 ORTHO05D009786 7.2e-16 86.7 56 67.9
Aqoxy1G00180 Aquilegia oxysepala HOM05D007733 ORTHO05D009786 9.3e-16 86.3 50 76.0
Medtr1g069390 Medicago truncatula HOM05D007733 ORTHO05D009786 1.2e-15 85.9 51 76.5
Potri.006G039100 Populus trichocarpa HOM05D007733 ORTHO05D009786 1.2e-15 85.9 51 70.6
GSVIVG01004069001 Vitis vinifera HOM05D007733 ORTHO05D009786 2.7e-15 84.7 51 74.5
Zm00001eb093420 Zea mays HOM05D007733 ORTHO05D009786 2.7e-15 84.7 41 87.8
CANSAT64G1685 Cannabis sativa HOM05D007733 ORTHO05D009786 4.6e-15 84.0 60 70.0
BraA06t25997Z Brassica rapa HOM05D007733 ORTHO05D009786 1.0e-14 82.8 54 72.2
PGR031G3673 Punica granatum HOM05D007733 ORTHO05D009786 1.0e-14 82.8 50 72.0
Peaxi162Scf00848g00014 Petunia axillaris HOM05D007733 ORTHO05D009786 1.8e-14 82.0 41 82.9
RcHm_v2.0_Chr1g0328381 Rosa chinensis HOM05D007733 ORTHO05D009786 1.8e-14 82.0 50 72.0
RcHm_v2.0_Chr1g0328511 Rosa chinensis HOM05D007733 ORTHO05D009786 1.8e-14 82.0 51 68.6
Lsat_1_v5_gn_5_157040 Lactuca sativa HOM05D007733 ORTHO05D009786 2.3e-14 81.6 50 76.0
Nitab4.5_0000812g0080 Nicotiana tabacum HOM05D007733 ORTHO05D009786 2.3e-14 81.6 41 82.9
MBI19_g20791_MAGBIO Magnolia biondii HOM05D007733 ORTHO05D009786 3.0e-14 81.3 45 75.6
BcaB02g09770 Brassica carinata HOM05D007733 ORTHO05D009786 3.9e-14 80.9 51 68.6
Nitab4.5_0004588g0050 Nicotiana tabacum HOM05D007733 ORTHO05D009786 3.9e-14 80.9 42 78.6
Hund24585 Selenicereus undatus HOM05D007733 ORTHO05D009786 3.9e-14 80.9 42 78.6
A06p30480 Brassica napus HOM05D007733 ORTHO05D009786 8.7e-14 79.7 54 70.4
BcaC01g02637 Brassica carinata HOM05D007733 ORTHO05D009786 1.9e-13 78.6 43 76.7
Peaxi162Scf00696g00024 Petunia axillaris HOM05D007733 ORTHO05D009786 1.9e-13 78.6 39 84.6
COL.COLO4_35702 Corchorus olitorius HOM05D007733 ORTHO05D009786 2.5e-13 78.2 41 82.9
Manes.02G094502 Manihot esculenta HOM05D007733 ORTHO05D009786 2.5e-13 78.2 41 78.0
vmacro07790 Vaccinium macrocarpon HOM05D007733 ORTHO05D009786 5.7e-13 77.0 41 78.0
Oeu022972.2 Olea europaea HOM05D007733 ORTHO05D009786 7.4e-13 76.6 41 80.5
Gohir.D11G257301 Gossypium hirsutum HOM05D007733 ORTHO05D009786 1.3e-12 75.9 41 78.0
Gorai.007G275700 Gossypium raimondii HOM05D007733 ORTHO05D009786 1.3e-12 75.9 41 78.0
FAN01G2779 Fragaria x ananassa HOM05D000072 ORTHO05D000026 1.6e-12 75.5 41 75.6
HanXRQChr01g0008231 Helianthus annuus HOM05D007733 ORTHO05D009786 2.2e-12 75.1 48 66.7
arahy.Tifrunner.gnm1.ann1.05QC9F Arachis hypogaea HOM05D007733 ORTHO05D009786 2.8e-12 74.7 56 60.7
Sc19g0008160 Simmondsia chinensis HOM05D007733 ORTHO05D009786 2.8e-12 74.7 41 75.6
SalBow7G0067 Salvia bowleyana HOM05D007733 ORTHO05D009786 6.3e-12 73.6 44 77.3
DCAR_027120 Daucus carota HOM05D000958 ORTHO05D000786 7.7e-10 66.6 34 82.4
HPP92_015863 Vanilla planifolia HOM05D007733 ORTHO05D009786 1.0e-09 66.2 47 59.6
HPP92_015865 Vanilla planifolia HOM05D007733 ORTHO05D009786 1.0e-09 66.2 47 59.6
Mapoly0009s0018 Marchantia polymorpha HOM05D007733 ORTHO05D009786 1.0e-06 56.2 44 56.8
RcHm_v2.0_Chr1g0328311 Rosa chinensis HOM05D007733 ORTHO05D009786 1.4e-06 55.8 34 67.6
Gohir.A11G247151 Gossypium hirsutum HOM05D007733 ORTHO05D009786 6.7e-06 53.5 30 76.7


User provided reference genes

Program Settings