Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0136500 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 7.3e-169 597.0 283 100.0
Os12g0133400 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 1.8e-159 565.8 283 94.7
Zm00001eb196200 Zea mays HOM05D007318 ORTHO05D009289 5.5e-116 421.4 262 74.4
Nn7g37225 Nelumbo nucifera HOM05D007318 ORTHO05D009289 3.0e-90 335.9 265 58.5
CSS0001089 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 6.8e-90 334.7 268 55.6
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 1.5e-89 333.6 267 58.1
CSS0042589 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 1.7e-88 330.1 268 55.2
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 2.2e-88 329.7 265 53.6
MBI13_g32993_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 2.8e-88 329.3 270 56.3
Dinv09616 Davidia involucrata HOM05D007318 ORTHO05D009289 1.1e-87 327.4 267 55.8
MD02G1257000 Malus domestica HOM05D007318 ORTHO05D009289 1.8e-87 326.6 265 55.8
Haze_02511 Corylus avellana HOM05D007318 ORTHO05D009289 3.1e-87 325.9 267 56.2
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 5.4e-87 325.1 267 56.9
Rhsim03G0098000 Rhododendron simsii HOM05D007318 ORTHO05D009289 1.2e-86 323.9 265 56.2
Ciclev10016201m.g Citrus clementina HOM05D007318 ORTHO05D009289 5.9e-86 321.6 267 54.7
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 2.3e-85 319.7 267 55.1
RcHm_v2.0_Chr1g0332361 Rosa chinensis HOM05D007318 ORTHO05D009289 3.8e-85 318.9 265 55.5
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 5.0e-85 318.5 267 54.3
COL.COLO4_33011 Corchorus olitorius HOM05D007318 ORTHO05D009289 1.1e-84 317.4 267 54.7
Atru.chr12.1022 Acer truncatum HOM05D007318 ORTHO05D009289 4.3e-84 315.5 267 53.2
Gorai.005G019900 Gossypium raimondii HOM05D007318 ORTHO05D009289 5.6e-84 315.1 267 53.6
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 7.3e-84 314.7 267 53.6
Actinidia18618 Actinidia chinensis HOM05D007318 ORTHO05D009289 1.2e-83 313.9 271 53.5
DCAR_018980 Daucus carota HOM05D007318 ORTHO05D009289 1.2e-83 313.9 267 54.3
FAN06G3353 Fragaria x ananassa HOM05D007318 ORTHO05D009289 1.2e-83 313.9 265 55.8
FvH4_7g05530 Fragaria vesca HOM05D007318 ORTHO05D009289 1.6e-83 313.5 265 55.8
TWI63G0749 Tripterygium wilfordii HOM05D007318 ORTHO05D009289 1.6e-83 313.5 267 54.3
Duzib151G0977 Durio zibethinus HOM05D007318 ORTHO05D009289 2.8e-83 312.8 267 53.2
FAN01G1304 Fragaria x ananassa HOM05D007318 ORTHO05D009289 8.0e-83 311.2 265 55.1
Oeu026589.2 Olea europaea HOM05D007318 ORTHO05D009289 1.0e-82 310.8 267 55.1
Manes.03G085100 Manihot esculenta HOM05D007318 ORTHO05D009289 1.8e-82 310.1 265 53.6
ECA238G4459 Erigeron canadensis HOM05D007318 ORTHO05D009289 3.4e-81 305.8 267 51.7
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 5.8e-81 305.1 264 53.4
MBI13_g44214_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 1.3e-80 303.9 267 53.9
Migut.F01608 Erythranthe guttata HOM05D007318 ORTHO05D009289 1.1e-79 300.8 273 52.4
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 2.4e-79 299.7 267 52.8
Hund22276 Selenicereus undatus HOM05D007318 ORTHO05D009289 2.4e-79 299.7 265 52.5
HanXRQChr07g0194021 Helianthus annuus HOM05D007318 ORTHO05D009289 5.4e-79 298.5 266 51.5
SalBow6G3105 Salvia bowleyana HOM05D007318 ORTHO05D009289 7.0e-79 298.1 266 53.0
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 2.0e-78 296.6 265 52.5
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 4.6e-78 295.4 218 62.4
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 6.0e-78 295.0 269 50.6
Peaxi162Scf00173g00322 Petunia axillaris HOM05D007318 ORTHO05D009289 7.8e-78 294.7 255 52.5
Cc02_g09660 Coffea canephora HOM05D007318 ORTHO05D009289 1.3e-77 293.9 265 52.1
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 1.3e-77 293.9 268 51.9
CsaV3_5G035390 Cucumis sativus L. HOM05D007318 ORTHO05D009289 3.0e-77 292.7 265 51.3
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 6.6e-77 291.6 265 50.6
Potri.010G238500 Populus trichocarpa HOM05D007318 ORTHO05D009289 6.6e-77 291.6 215 58.1
Sopen11g002850 Solanum pennellii HOM05D007318 ORTHO05D009289 6.6e-77 291.6 271 49.8
Prupe.2G075500 Prunus persica HOM05D007318 ORTHO05D009289 1.1e-76 290.8 228 58.8
PSO384G0062 Papaver somniferum HOM05D007318 ORTHO05D009289 1.9e-76 290.0 270 51.5
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 1.9e-76 290.0 263 52.1
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 5.6e-76 288.5 264 50.4
SGA_v2.0_scaffold13G06456 Striga asiatica HOM05D007318 ORTHO05D009289 2.1e-75 286.6 266 50.8
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 8.0e-75 284.6 267 48.3
CANSAT56G0802 Cannabis sativa HOM05D007318 ORTHO05D009289 1.8e-74 283.5 287 48.8
HPP92_018209 Vanilla planifolia HOM05D007318 ORTHO05D009289 2.3e-74 283.1 265 51.7
Aqoxy1G02117 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 3.1e-74 282.7 266 50.4
EL10Ac4g08684 Beta vulgaris HOM05D007318 ORTHO05D009289 1.3e-72 277.3 265 49.1
Lj2A32G32 Lonicera japonica HOM05D007318 ORTHO05D009289 1.2e-70 270.8 262 50.4
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 1.6e-70 270.4 265 47.9
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 1.6e-70 270.4 265 47.9
Aqoxy1G02095 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 2.1e-70 270.0 278 47.5
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 2.7e-70 269.6 265 47.9
Lsat_1_v5_gn_2_104460 Lactuca sativa HOM05D007318 ORTHO05D009289 3.5e-70 269.2 273 47.3
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 4.6e-70 268.9 278 46.0
MELO3C012351.2 Cucumis melo HOM05D007318 ORTHO05D009289 1.7e-69 266.9 280 47.9
unitig_0.g1560 Utricularia gibba HOM05D007318 ORTHO05D009289 2.5e-68 263.1 268 48.1
Cpa.g.sc5.264 Carica papaya HOM05D007318 ORTHO05D009289 1.2e-67 260.8 228 54.8
TPR.G10614 Trifolium pratense HOM05D007318 ORTHO05D009289 1.2e-67 260.8 273 46.9
ATR1096G030 Amborella trichopoda HOM05D007318 ORTHO05D009289 2.8e-67 259.6 228 51.8
Solyc11g006930.3 Solanum lycopersicum HOM05D007318 ORTHO05D009289 1.1e-66 257.7 218 53.7
Medtr1g050425 Medicago truncatula HOM05D007318 ORTHO05D009289 3.4e-65 252.7 296 43.9
Mapoly0020s0170 Marchantia polymorpha HOM05D007318 ORTHO05D009289 7.5e-65 251.5 270 45.6
Psat2g020440 Pisum sativum HOM05D007318 ORTHO05D009289 1.0e-61 241.1 319 39.8
ClCG05G018410 Citrullus lanatus HOM05D007318 ORTHO05D009289 2.1e-59 233.4 267 43.8
Cfa011269 Carpinus fangiana HOM05D007318 ORTHO05D009289 1.5e-57 227.3 182 55.5
AagrBONN_evm.TU.Sc2ySwM_368.1913 Anthoceros agrestis HOM05D007318 ORTHO05D009289 5.8e-57 225.3 273 41.4
ClCG05G021760 Citrullus lanatus HOM05D007318 ORTHO05D009289 6.4e-56 221.9 188 53.2
TAR636G1683 Trochodendron aralioides HOM05D007318 ORTHO05D009289 9.2e-55 218.0 170 61.8
AUR62043602 Chenopodium quinoa HOM05D007318 ORTHO05D009289 2.8e-51 206.5 322 34.2
Pp3c5_16220 Physcomitrium patens HOM05D007318 ORTHO05D009289 2.4e-50 203.4 271 41.3
Thecc.03G070600 Theobroma cacao HOM05D007318 ORTHO05D009289 2.2e-48 196.8 158 60.1
AUR62042079 Chenopodium quinoa HOM05D007318 ORTHO05D009289 6.4e-48 195.3 180 49.4
Glyma.02G164100 Glycine max HOM05D007318 ORTHO05D009289 1.6e-46 190.7 172 54.1
SMO172G0015 Selaginella moellendorffii HOM05D007318 ORTHO05D009289 3.5e-46 189.5 244 41.8
MSTRG.421 Avicennia marina HOM05D007318 ORTHO05D009289 2.1e-43 180.3 180 50.0
PRCOL_00002097 Prasinoderma coloniale HOM05D007318 ORTHO05D009289 7.6e-41 171.8 280 32.5
Psat6g095000 Pisum sativum HOM05D007318 ORTHO05D009289 4.9e-40 169.1 264 36.7
MBI13_g43865_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 1.6e-38 164.1 112 64.3
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 6.0e-38 162.2 137 46.0
ClCG00G005260 Citrullus lanatus HOM05D007318 ORTHO05D009289 1.8e-37 160.6 135 49.6
SEGI_17929 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 1.5e-36 157.5 168 50.6
MCO07G233 Micromonas commoda HOM05D007318 ORTHO05D009289 1.5e-33 147.5 314 31.8
Cre07.g323750 Chlamydomonas reinhardtii HOM05D007318 ORTHO05D009289 2.8e-27 126.7 283 32.5
Lsat_1_v5_gn_5_177140 Lactuca sativa HOM05D007318 ORTHO05D009289 4.5e-25 119.4 141 46.1
Dinv09612 Davidia involucrata HOM05D007318 ORTHO05D009289 1.1e-20 104.8 152 41.4
PGSC0003DMG400023973 Solanum tuberosum HOM05D007318 ORTHO05D009289 4.3e-20 102.8 77 58.4
SEGI_12071 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 5.9e-17 92.4 117 37.6
MBI13_g44208_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 1.3e-11 74.7 40 75.0
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 3.1e-10 70.1 225 24.9
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 1.2e-09 68.2 228 24.6
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 3.4e-09 66.6 210 23.8
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 3.4e-09 66.6 261 21.5
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 4.5e-09 66.2 227 22.9
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 7.7e-09 65.5 250 22.0
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 1.7e-08 64.3 221 23.5
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 3.8e-08 63.2 216 25.0
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 3.8e-08 63.2 230 23.9
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 3.8e-08 63.2 218 24.8
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 5.0e-08 62.8 210 23.8
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 5.0e-08 62.8 157 24.8
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 5.0e-08 62.8 157 24.8
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 6.5e-08 62.4 176 25.6
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 8.5e-08 62.0 208 25.5
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 8.5e-08 62.0 232 22.8
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 8.5e-08 62.0 245 22.0
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 1.1e-07 61.6 157 25.5
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 1.1e-07 61.6 176 25.6
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 1.1e-07 61.6 224 23.2
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 1.4e-07 61.2 221 23.1
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 1.4e-07 61.2 221 23.1
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 1.4e-07 61.2 213 24.4
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 1.4e-07 61.2 213 24.4
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 1.4e-07 61.2 176 25.0
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 1.4e-07 61.2 240 23.8
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 1.9e-07 60.8 213 24.4
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 2.5e-07 60.5 213 24.4
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 2.5e-07 60.5 224 23.2
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 2.5e-07 60.5 228 25.9
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 3.2e-07 60.1 157 24.2
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 3.2e-07 60.1 176 25.0
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 4.2e-07 59.7 181 22.7
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 4.2e-07 59.7 237 23.2
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 4.2e-07 59.7 239 21.8
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 4.2e-07 59.7 234 22.6
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 5.5e-07 59.3 209 23.0
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 5.5e-07 59.3 173 25.4
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 7.2e-07 58.9 220 24.5
Glyma.20G074100 Glycine max HOM05D007318 ORTHO05D009289 7.2e-07 58.9 86 38.4
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 9.4e-07 58.5 218 22.9
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 9.4e-07 58.5 159 25.2
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 1.2e-06 58.2 221 24.0
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 1.6e-06 57.8 215 24.2
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 1.6e-06 57.8 157 24.8
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 2.7e-06 57.0 216 24.1
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 2.7e-06 57.0 157 24.2
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 2.7e-06 57.0 155 23.9
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 2.7e-06 57.0 155 23.9
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 2.7e-06 57.0 219 23.7
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 4.7e-06 56.2 157 24.8
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 4.7e-06 56.2 208 24.0
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 4.7e-06 56.2 224 24.6
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 6.1e-06 55.8 221 21.3
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 6.1e-06 55.8 157 25.5
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 6.1e-06 55.8 244 23.0


User provided reference genes

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