Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0133900 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 5.2e-95 351.3 209 100.0
Zm00001eb235420 Zea mays HOM05D005755 ORTHO05D007006 6.2e-40 168.3 97 85.6
Os12g0131266 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 5.3e-39 165.2 83 98.8
Zm00001eb163500 Zea mays HOM05D005755 ORTHO05D007006 4.9e-37 158.7 97 81.4
HPP92_016041 Vanilla planifolia HOM05D005755 ORTHO05D007006 1.5e-30 137.1 99 67.7
Atru.chr12.636 Acer truncatum HOM05D005755 ORTHO05D007006 3.8e-29 132.5 100 67.0
Thecc.10G068000 Theobroma cacao HOM05D005755 ORTHO05D007006 4.9e-29 132.1 99 66.7
Cpa.g.sc53.20 Carica papaya HOM05D005755 ORTHO05D007006 1.4e-28 130.6 98 66.3
Manes.10G042600 Manihot esculenta HOM05D005755 ORTHO05D007006 1.9e-28 130.2 99 63.6
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 1.9e-28 130.2 97 68.0
PGR142G0594 Punica granatum HOM05D005755 ORTHO05D007006 3.2e-28 129.4 98 64.3
vmacro04890 Vaccinium macrocarpon HOM05D005755 ORTHO05D007006 3.2e-28 129.4 99 64.6
CANSAT11G0923 Cannabis sativa HOM05D005755 ORTHO05D007006 5.4e-28 128.6 99 65.7
Ciclev10033129m.g Citrus clementina HOM05D005755 ORTHO05D007006 5.4e-28 128.6 99 64.6
Dinv04676 Davidia involucrata HOM05D005755 ORTHO05D007006 5.4e-28 128.6 99 62.6
Sed0018161 Sechium edule HOM05D005755 ORTHO05D007006 5.4e-28 128.6 99 64.6
QL08p056843 Quercus lobata HOM05D005755 ORTHO05D007006 7.1e-28 128.3 99 64.6
Actinidia38859 Actinidia chinensis HOM05D005755 ORTHO05D007006 9.3e-28 127.9 96 64.6
CiPaw.15G145100 Carya illinoinensis HOM05D005755 ORTHO05D007006 9.3e-28 127.9 99 63.6
ECA238G0308 Erigeron canadensis HOM05D005755 ORTHO05D007006 9.3e-28 127.9 100 65.0
MBI19_g25006_MAGBIO Magnolia biondii HOM05D005755 ORTHO05D007006 9.3e-28 127.9 98 65.3
Sc05g0001890 Simmondsia chinensis HOM05D005755 ORTHO05D007006 9.3e-28 127.9 99 62.6
Hund18453 Selenicereus undatus HOM05D005755 ORTHO05D007006 1.2e-27 127.5 99 62.6
Aqoxy3G01116 Aquilegia oxysepala HOM05D005755 ORTHO05D007006 1.6e-27 127.1 98 60.2
Cfa019629 Carpinus fangiana HOM05D005755 ORTHO05D007006 1.6e-27 127.1 99 64.6
Glyma.05G164400 Glycine max HOM05D005755 ORTHO05D007006 1.6e-27 127.1 99 63.6
Aa31LG7G12880 Aethionema arabicum HOM05D005755 ORTHO05D007006 2.7e-27 126.3 101 63.4
Nn5g30302 Nelumbo nucifera HOM05D005755 ORTHO05D007006 3.5e-27 125.9 99 61.6
TAR381G1573 Trochodendron aralioides HOM05D005755 ORTHO05D007006 3.5e-27 125.9 99 62.6
Dinv11808 Davidia involucrata HOM05D005755 ORTHO05D007006 4.6e-27 125.6 99 61.6
Gohir.A01G133200 Gossypium hirsutum HOM05D005755 ORTHO05D007006 4.6e-27 125.6 99 62.6
Ca_19066_v3 Cicer arietinum L. HOM05D005755 ORTHO05D007006 6.0e-27 125.2 100 60.0
Cc00_g19060 Coffea canephora HOM05D005755 ORTHO05D007006 6.0e-27 125.2 102 61.8
Eucgr.G02800 Eucalyptus grandis HOM05D005755 ORTHO05D007006 6.0e-27 125.2 99 60.6
Hma1.2p1_0157F.1_g068960 Hydrangea macrophylla HOM05D005755 ORTHO05D007006 6.0e-27 125.2 97 64.9
Gorai.002G143500 Gossypium raimondii HOM05D005755 ORTHO05D007006 7.9e-27 124.8 99 61.6
Oeu057236.1 Olea europaea HOM05D005755 ORTHO05D007006 7.9e-27 124.8 98 63.3
Peaxi162Scf00111g00718 Petunia axillaris HOM05D005755 ORTHO05D007006 7.9e-27 124.8 100 61.0
BcaC03g14561 Brassica carinata HOM05D005755 ORTHO05D007006 1.0e-26 124.4 97 63.9
C02p20090 Brassica napus HOM05D005755 ORTHO05D007006 1.0e-26 124.4 97 63.9
CSS0044562 Camellia sinensis var. sinensis HOM05D005755 ORTHO05D007006 1.0e-26 124.4 102 62.7
Glyma.08G121800 Glycine max HOM05D005755 ORTHO05D007006 1.0e-26 124.4 99 62.6
BolC2t08139H Brassica oleracea HOM05D005755 ORTHO05D007006 1.3e-26 124.0 97 63.9
CAN.G79.77 Capsicum annuum HOM05D005755 ORTHO05D007006 1.3e-26 124.0 103 60.2
CARHR264900 Cardamine hirsuta HOM05D005755 ORTHO05D007006 1.3e-26 124.0 96 64.6
Medtr6g068850 Medicago truncatula HOM05D005755 ORTHO05D007006 1.3e-26 124.0 100 60.0
Peaxi162Scf00373g00210 Petunia axillaris HOM05D005755 ORTHO05D007006 1.3e-26 124.0 100 61.0
ATR1096G048 Amborella trichopoda HOM05D005755 ORTHO05D007006 1.8e-26 123.6 98 60.2
FAN10G3796 Fragaria x ananassa HOM05D005755 ORTHO05D007006 1.8e-26 123.6 99 63.6
Nitab4.5_0000061g0170 Nicotiana tabacum HOM05D005755 ORTHO05D007006 1.8e-26 123.6 103 59.2
Duzib114G0063 Durio zibethinus HOM05D005755 ORTHO05D007006 2.3e-26 123.2 99 61.6
RcHm_v2.0_Chr1g0364121 Rosa chinensis HOM05D005755 ORTHO05D007006 2.3e-26 123.2 100 63.0
TPR.G12499 Trifolium pratense HOM05D005755 ORTHO05D007006 2.3e-26 123.2 100 59.0
GSVIVG01016339001 Vitis vinifera HOM05D005755 ORTHO05D007006 2.3e-26 123.2 99 60.6
AUR62004768 Chenopodium quinoa HOM05D005755 ORTHO05D007006 3.0e-26 122.9 100 60.0
FvH4_7g20160 Fragaria vesca HOM05D005755 ORTHO05D007006 3.0e-26 122.9 99 63.6
Sp6g14210 Schrenkiella parvula HOM05D005755 ORTHO05D007006 3.0e-26 122.9 97 63.9
Sopen04g020610 Solanum pennellii HOM05D005755 ORTHO05D007006 3.0e-26 122.9 103 59.2
AT5G51960 Arabidopsis thaliana HOM05D005755 ORTHO05D007006 3.9e-26 122.5 97 62.9
AUR62037483 Chenopodium quinoa HOM05D005755 ORTHO05D007006 3.9e-26 122.5 100 59.0
CsaV3_3G030820 Cucumis sativus L. HOM05D005755 ORTHO05D007006 3.9e-26 122.5 99 62.6
Duzib106G1131 Durio zibethinus HOM05D005755 ORTHO05D007006 3.9e-26 122.5 99 60.6
Prupe.2G218600 Prunus persica HOM05D005755 ORTHO05D007006 3.9e-26 122.5 99 60.6
Thhalv10015092m.g Eutrema salsugineum HOM05D005755 ORTHO05D007006 5.1e-26 122.1 97 64.9
Rhsim09G0154200 Rhododendron simsii HOM05D001639 ORTHO05D004140 5.1e-26 122.1 124 55.6
AL8G32330 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 6.7e-26 121.7 97 62.9
BraA02t06267Z Brassica rapa HOM05D005755 ORTHO05D007006 6.7e-26 121.7 97 63.9
FAN01G0677 Fragaria x ananassa HOM05D005755 ORTHO05D007006 6.7e-26 121.7 99 63.6
EL10Ac6g13227 Beta vulgaris HOM05D005755 ORTHO05D007006 8.7e-26 121.3 100 58.0
MD07G1179300 Malus domestica HOM05D005755 ORTHO05D007006 8.7e-26 121.3 99 61.6
Phvul.002G244400 Phaseolus vulgaris HOM05D005755 ORTHO05D007006 8.7e-26 121.3 99 59.6
TWI15G0398 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 8.7e-26 121.3 100 61.0
AL8G26290 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 1.1e-25 120.9 97 62.9
MSTRG.8164 Avicennia marina HOM05D005755 ORTHO05D007006 1.1e-25 120.9 97 61.9
Oeu017232.1 Olea europaea HOM05D005755 ORTHO05D007006 1.1e-25 120.9 98 62.2
THA.LOC104799357 Tarenaya hassleriana HOM05D005755 ORTHO05D007006 1.1e-25 120.9 99 59.6
Lj4g0006534 Lotus japonicus HOM05D005755 ORTHO05D007006 1.5e-25 120.6 99 62.6
Nitab4.5_0001721g0080 Nicotiana tabacum HOM05D005755 ORTHO05D007006 1.5e-25 120.6 103 58.3
Solyc04g049970.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 1.5e-25 120.6 101 59.4
Ah.04g160050 Amaranthus hybridus HOM05D005755 ORTHO05D007006 1.9e-25 120.2 97 61.9
A10p09750 Brassica napus HOM05D005755 ORTHO05D007006 1.9e-25 120.2 97 63.9
CDE10G1261 Ceratophyllum demersum HOM05D005755 ORTHO05D007006 1.9e-25 120.2 99 59.6
FAN06G3582 Fragaria x ananassa HOM05D005755 ORTHO05D007006 2.5e-25 119.8 111 57.7
BcaB08g35550 Brassica carinata HOM05D005755 ORTHO05D007006 3.3e-25 119.4 97 61.9
Lsat_1_v5_gn_2_46180 Lactuca sativa HOM05D005755 ORTHO05D007006 4.3e-25 119.0 108 56.5
BraA10t43055Z Brassica rapa HOM05D005755 ORTHO05D007006 5.6e-25 118.6 97 62.9
Carub.0008s1205 Capsella rubella HOM05D005755 ORTHO05D007006 5.6e-25 118.6 98 60.2
Psat1g119080 Pisum sativum HOM05D005755 ORTHO05D007006 5.6e-25 118.6 100 57.0
Sopen07g033930 Solanum pennellii HOM05D005755 ORTHO05D007006 5.6e-25 118.6 102 57.8
EL10Ac7g15953 Beta vulgaris HOM05D005755 ORTHO05D007006 9.6e-25 117.9 100 57.0
EL10Ac7g17935 Beta vulgaris HOM05D005755 ORTHO05D007006 9.6e-25 117.9 100 57.0
BcaB05g23952 Brassica carinata HOM05D005755 ORTHO05D007006 9.6e-25 117.9 97 60.8
BcaC04g20616 Brassica carinata HOM05D005755 ORTHO05D007006 9.6e-25 117.9 97 62.9
C09p41470 Brassica napus HOM05D005755 ORTHO05D007006 9.6e-25 117.9 97 62.9
BolC9t57024H Brassica oleracea HOM05D005755 ORTHO05D007006 9.6e-25 117.9 97 62.9
PSO675G6920 Papaver somniferum HOM05D005755 ORTHO05D007006 9.6e-25 117.9 100 58.0
Solyc07g065720.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 9.6e-25 117.9 101 58.4
PGSC0003DMG400022164 Solanum tuberosum HOM05D005755 ORTHO05D007006 9.6e-25 117.9 102 57.8
DCAR_015273 Daucus carota HOM05D005755 ORTHO05D007006 1.3e-24 117.5 99 58.6
Migut.F01798 Erythranthe guttata HOM05D005755 ORTHO05D007006 1.3e-24 117.5 96 59.4
Lalb_Chr07g0186081 Lupinus albus HOM05D005755 ORTHO05D007006 1.3e-24 117.5 101 61.4
SalBow1G5334 Salvia bowleyana HOM05D005755 ORTHO05D007006 1.6e-24 117.1 97 62.9
SalBow1G7067 Salvia bowleyana HOM05D005755 ORTHO05D007006 1.6e-24 117.1 97 62.9
Sabra08G0030600 Salix brachista HOM05D005755 ORTHO05D007006 2.1e-24 116.7 100 59.0
EL10Ac3g06003 Beta vulgaris HOM05D005755 ORTHO05D007006 2.8e-24 116.3 100 56.0
Potri.008G044200 Populus trichocarpa HOM05D005755 ORTHO05D007006 2.8e-24 116.3 99 57.6
FAN03G2322 Fragaria x ananassa HOM05D005755 ORTHO05D007006 4.8e-24 115.5 96 61.5
MD01G1131200 Malus domestica HOM05D005755 ORTHO05D007006 4.8e-24 115.5 99 57.6
SalBow3G2244 Salvia bowleyana HOM05D005755 ORTHO05D007006 4.8e-24 115.5 97 61.9
SalBow3G3619 Salvia bowleyana HOM05D005755 ORTHO05D007006 4.8e-24 115.5 97 61.9
Gohir.D01G118000 Gossypium hirsutum HOM05D005755 ORTHO05D007006 1.8e-23 113.6 117 52.1
Potri.010G217300 Populus trichocarpa HOM05D005755 ORTHO05D007006 1.8e-23 113.6 100 58.0
TWI38G1562 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 5.3e-23 112.1 100 59.0
unitig_8.g3685 Utricularia gibba HOM05D005755 ORTHO05D007006 1.5e-22 110.5 98 61.2
VMungo0251G2378 Vigna mungo HOM05D001210 ORTHO05D001036 2.0e-22 110.2 96 57.3
EL10Ac5g11654 Beta vulgaris HOM05D005755 ORTHO05D007006 3.4e-22 109.4 96 55.2
SEGI_41538 Sequoiadendron giganteum HOM05D005755 ORTHO05D007006 1.0e-21 107.8 99 52.5
arahy.Tifrunner.gnm1.ann1.FL0JYU Arachis hypogaea HOM05D005755 ORTHO05D007006 1.3e-21 107.5 101 56.4
arahy.Tifrunner.gnm1.ann1.QA5RE0 Arachis hypogaea HOM05D005755 ORTHO05D007006 1.3e-21 107.5 101 56.4
SMO207G0003 Selaginella moellendorffii HOM05D005755 ORTHO05D007006 1.3e-21 107.5 98 59.2
SGA_v2.0_scaffold71G24037 Striga asiatica HOM05D005755 ORTHO05D007006 2.9e-21 106.3 99 54.5
AagrBONN_evm.TU.Sc2ySwM_362.2659 Anthoceros agrestis HOM05D005755 ORTHO05D007006 6.7e-18 95.1 103 47.6
TPR.G31353 Trifolium pratense HOM05D005755 ORTHO05D007006 4.8e-16 89.0 56 73.2
Glyma.19G087500 Glycine max HOM05D005755 ORTHO05D007006 6.9e-15 85.1 97 51.5
Mapoly0006s0175 Marchantia polymorpha HOM05D005755 ORTHO05D007006 2.6e-14 83.2 99 43.4
Pp3c3_10790 Physcomitrium patens HOM05D005755 ORTHO05D007006 1.3e-13 80.9 101 47.5
Haze_18895 Corylus avellana HOM05D005755 ORTHO05D007006 8.7e-10 68.2 75 50.7
Lj3g0006677 Lotus japonicus HOM05D005755 ORTHO05D007006 2.5e-09 66.6 64 51.6
HanXRQChr14g0436521 Helianthus annuus HOM05D005755 ORTHO05D007006 9.7e-09 64.7 63 44.4
A02p12030 Brassica napus HOM05D005755 ORTHO05D007006 2.8e-08 63.2 63 50.8
Oeu057237.1 Olea europaea HOM05D005755 ORTHO05D007006 2.8e-08 63.2 63 47.6
AL792U10010 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 1.8e-07 60.5 61 50.8
Lj3g0023846 Lotus japonicus HOM05D005755 ORTHO05D007006 5.3e-07 58.9 63 50.8
CBR_g23899 Chara braunii HOM05D005755 ORTHO05D007006 9.0e-07 58.2 96 36.5
Prupe.2G218400 Prunus persica HOM05D005755 ORTHO05D007006 3.4e-06 56.2 98 40.8


User provided reference genes

Program Settings