Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0133700 Oryza sativa ssp. japonica HOM05D003693 ORTHO05D031300 7.8e-39 163.3 82 100.0
Os12g0131150 Oryza sativa ssp. japonica HOM05D003693 ORTHO05D031300 7.8e-39 163.3 82 100.0
Zm00001eb163520 Zea mays HOM05D003693 ORTHO05D004698 6.9e-35 150.2 82 92.7
HPP92_019436 Vanilla planifolia HOM05D003693 ORTHO05D004698 1.5e-34 149.1 82 86.6
MBI19_g25011_MAGBIO Magnolia biondii HOM05D003693 ORTHO05D004698 6.2e-28 127.1 89 73.0
TAR563G0002 Trochodendron aralioides HOM05D003693 ORTHO05D004698 4.5e-26 120.9 89 68.5
Hma1.2p1_0685F.1_g203180 Hydrangea macrophylla HOM05D003693 ORTHO05D004698 7.6e-26 120.2 89 69.7
ATR1096G033 Amborella trichopoda HOM05D003693 ORTHO05D004698 2.9e-25 118.2 87 71.3
CsaV3_2G010560 Cucumis sativus L. HOM05D003693 ORTHO05D004698 6.4e-25 117.1 89 69.7
Dinv09309 Davidia involucrata HOM05D003693 ORTHO05D004698 6.4e-25 117.1 89 67.4
Rhsim07G0058800 Rhododendron simsii HOM05D003693 ORTHO05D004698 6.4e-25 117.1 89 67.4
Nn2g12199 Nelumbo nucifera HOM05D003693 ORTHO05D004698 1.1e-24 116.3 89 67.4
ClCG11G009710 Citrullus lanatus HOM05D003693 ORTHO05D004698 1.4e-24 115.9 89 68.5
MELO3C008557.2 Cucumis melo HOM05D003693 ORTHO05D004698 1.4e-24 115.9 89 68.5
TAR369G0556 Trochodendron aralioides HOM05D003693 ORTHO05D004698 1.9e-24 115.5 89 66.3
Aqoxy5G04181 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 3.2e-24 114.8 86 66.3
CDE08G0281 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 3.2e-24 114.8 88 65.9
MSTRG.17008 Avicennia marina HOM05D003693 ORTHO05D004698 4.2e-24 114.4 89 65.2
Sed0016989 Sechium edule HOM05D003693 ORTHO05D004698 4.2e-24 114.4 89 67.4
ECA248G0053 Erigeron canadensis HOM05D003693 ORTHO05D004698 5.4e-24 114.0 89 66.3
Potri.019G054500 Populus trichocarpa HOM05D003693 ORTHO05D004698 5.4e-24 114.0 89 66.3
Atru.chr12.1748 Acer truncatum HOM05D003693 ORTHO05D004698 9.3e-24 113.2 89 66.3
Ciclev10011203m.g Citrus clementina HOM05D003693 ORTHO05D004698 9.3e-24 113.2 89 66.3
Dinv43405 Davidia involucrata HOM05D003693 ORTHO05D004698 9.3e-24 113.2 89 66.3
Manes.12G004200 Manihot esculenta HOM05D003693 ORTHO05D004698 9.3e-24 113.2 89 66.3
Thecc.05G189800 Theobroma cacao HOM05D003693 ORTHO05D004698 9.3e-24 113.2 89 64.0
CSS0039233 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 1.2e-23 112.8 89 65.2
Sabra19G0063500 Salix brachista HOM05D003693 ORTHO05D004698 1.2e-23 112.8 89 66.3
Sc10g0000370 Simmondsia chinensis HOM05D003693 ORTHO05D004698 1.2e-23 112.8 84 69.0
Actinidia08353 Actinidia chinensis HOM05D003693 ORTHO05D004698 1.6e-23 112.5 87 67.8
CDE04G2718 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 1.6e-23 112.5 89 65.2
COL.COLO4_12338 Corchorus olitorius HOM05D003693 ORTHO05D004698 1.6e-23 112.5 89 65.2
Oeu014595.1 Olea europaea HOM05D003693 ORTHO05D004698 1.6e-23 112.5 89 64.0
Thecc.01G406700 Theobroma cacao HOM05D003693 ORTHO05D004698 1.6e-23 112.5 89 64.0
GSVIVG01032211001 Vitis vinifera HOM05D003693 ORTHO05D004698 1.6e-23 112.5 89 65.2
Lsat_1_v5_gn_1_104980 Lactuca sativa HOM05D003693 ORTHO05D004698 2.1e-23 112.1 89 65.2
Duzib128G1866 Durio zibethinus HOM05D003693 ORTHO05D004698 2.7e-23 111.7 89 62.9
CiPaw.16G119500 Carya illinoinensis HOM05D003693 ORTHO05D004698 3.5e-23 111.3 89 66.3
CDE07G0727 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 3.5e-23 111.3 89 64.0
DCAR_029706 Daucus carota HOM05D003693 ORTHO05D004698 3.5e-23 111.3 87 64.4
FAN02G0024 Fragaria x ananassa HOM05D003693 ORTHO05D004698 3.5e-23 111.3 84 67.9
Lj8C726G3 Lonicera japonica HOM05D003693 ORTHO05D004698 3.5e-23 111.3 89 65.2
Aqoxy1G02791 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 4.6e-23 110.9 84 66.7
Cfa020929 Carpinus fangiana HOM05D003693 ORTHO05D004698 4.6e-23 110.9 89 65.2
Migut.B01266 Erythranthe guttata HOM05D003693 ORTHO05D004698 6.0e-23 110.5 89 65.2
unitig_0.g1393 Utricularia gibba HOM05D003693 ORTHO05D004698 6.0e-23 110.5 89 64.0
MSTRG.20559 Avicennia marina HOM05D003693 ORTHO05D004698 7.9e-23 110.2 89 64.0
Gohir.A05G393100 Gossypium hirsutum HOM05D003693 ORTHO05D004698 7.9e-23 110.2 90 62.2
HanXRQChr06g0179741 Helianthus annuus HOM05D003693 ORTHO05D004698 7.9e-23 110.2 89 64.0
Nitab4.5_0001244g0140 Nicotiana tabacum HOM05D003693 ORTHO05D004698 1.3e-22 109.4 86 65.1
Nitab4.5_0005367g0010 Nicotiana tabacum HOM05D003693 ORTHO05D004698 1.3e-22 109.4 86 65.1
PGSC0003DMG400006778 Solanum tuberosum HOM05D003693 ORTHO05D004698 1.3e-22 109.4 84 66.7
AUR62009420 Chenopodium quinoa HOM05D003693 ORTHO05D004698 1.8e-22 109.0 84 66.7
AUR62023098 Chenopodium quinoa HOM05D003693 ORTHO05D004698 1.8e-22 109.0 84 66.7
Eucgr.H01402 Eucalyptus grandis HOM05D003693 ORTHO05D004698 1.8e-22 109.0 83 67.5
Eucgr.H01630 Eucalyptus grandis HOM05D003693 ORTHO05D004698 1.8e-22 109.0 83 67.5
Gohir.D04G022000 Gossypium hirsutum HOM05D003693 ORTHO05D004698 1.8e-22 109.0 90 62.2
Gorai.012G026300 Gossypium raimondii HOM05D003693 ORTHO05D004698 1.8e-22 109.0 90 62.2
QL10p037598 Quercus lobata HOM05D003693 ORTHO05D004698 1.8e-22 109.0 89 64.0
EL10Ac2g04376 Beta vulgaris HOM05D003693 ORTHO05D004698 2.3e-22 108.6 84 66.7
Lsat_1_v5_gn_3_45201 Lactuca sativa HOM05D003693 ORTHO05D004698 2.3e-22 108.6 89 62.9
Mapoly0131s0027 Marchantia polymorpha HOM05D003693 ORTHO05D004698 2.3e-22 108.6 82 63.4
SGA_v2.0_scaffold119G32763 Striga asiatica HOM05D003693 ORTHO05D004698 2.3e-22 108.6 87 64.4
Peaxi162Scf00694g00440 Petunia axillaris HOM05D003693 ORTHO05D004698 3.0e-22 108.2 86 64.0
Solyc01g087870.4 Solanum lycopersicum HOM05D003693 ORTHO05D004698 3.0e-22 108.2 84 65.5
Sopen01g034800 Solanum pennellii HOM05D003693 ORTHO05D004698 3.0e-22 108.2 84 65.5
CAN.G1619.1 Capsicum annuum HOM05D003693 ORTHO05D004698 3.9e-22 107.8 86 64.0
Gohir.D12G103600 Gossypium hirsutum HOM05D003693 ORTHO05D004698 3.9e-22 107.8 89 62.9
Gorai.008G112800 Gossypium raimondii HOM05D003693 ORTHO05D004698 3.9e-22 107.8 89 62.9
Gohir.A12G100800 Gossypium hirsutum HOM05D003693 ORTHO05D004698 5.1e-22 107.5 89 62.9
Peaxi162Scf00071g01043 Petunia axillaris HOM05D003693 ORTHO05D004698 5.1e-22 107.5 86 65.1
SMO301G0028 Selaginella moellendorffii HOM05D003693 ORTHO05D004698 5.1e-22 107.5 88 61.4
Ah.10g038580 Amaranthus hybridus HOM05D003693 ORTHO05D004698 6.7e-22 107.1 84 65.5
CANSAT21G0769 Cannabis sativa HOM05D003693 ORTHO05D004698 6.7e-22 107.1 87 63.2
Duzib133G0510 Durio zibethinus HOM05D003693 ORTHO05D004698 6.7e-22 107.1 89 60.7
Thhalv10002424m.g Eutrema salsugineum HOM05D003693 ORTHO05D004698 6.7e-22 107.1 86 64.0
Lalb_Chr01g0020541 Lupinus albus HOM05D003693 ORTHO05D004698 6.7e-22 107.1 89 60.7
PSO339G5758 Papaver somniferum HOM05D003693 ORTHO05D004698 6.7e-22 107.1 89 64.0
PSO384G0563 Papaver somniferum HOM05D003693 ORTHO05D004698 6.7e-22 107.1 89 64.0
Psat3g102600 Pisum sativum HOM05D003693 ORTHO05D004698 6.7e-22 107.1 89 62.9
RcHm_v2.0_Chr3g0447661 Rosa chinensis HOM05D003693 ORTHO05D004698 6.7e-22 107.1 84 65.5
Sp3g21850 Schrenkiella parvula HOM05D003693 ORTHO05D004698 6.7e-22 107.1 86 64.0
THA.LOC104808730 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 8.7e-22 106.7 87 60.9
TWI36G1545 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 8.7e-22 106.7 89 60.7
Duzib268G0828 Durio zibethinus HOM05D003693 ORTHO05D004698 1.1e-21 106.3 89 60.7
A03p43420 Brassica napus HOM05D003693 ORTHO05D004698 1.5e-21 105.9 82 65.9
CARHR100130 Cardamine hirsuta HOM05D003693 ORTHO05D004698 1.5e-21 105.9 83 65.1
FvH4_6g00360 Fragaria vesca HOM05D003693 ORTHO05D004698 1.5e-21 105.9 84 65.5
FAN09G1864 Fragaria x ananassa HOM05D003693 ORTHO05D004698 1.5e-21 105.9 84 65.5
FAN14G5956 Fragaria x ananassa HOM05D003693 ORTHO05D004698 1.5e-21 105.9 84 65.5
TWI18G0649 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 1.5e-21 105.9 89 59.6
BcaB06g26591 Brassica carinata HOM05D003693 ORTHO05D004698 1.9e-21 105.5 82 64.6
BcaC01g03357 Brassica carinata HOM05D003693 ORTHO05D004698 1.9e-21 105.5 82 65.9
BcaC06g35626 Brassica carinata HOM05D003693 ORTHO05D004698 1.9e-21 105.5 82 64.6
A07p08260 Brassica napus HOM05D003693 ORTHO05D004698 1.9e-21 105.5 82 64.6
C03p53370 Brassica napus HOM05D003693 ORTHO05D004698 1.9e-21 105.5 82 65.9
C07p12800 Brassica napus HOM05D003693 ORTHO05D004698 1.9e-21 105.5 82 64.6
BolC3t17596H Brassica oleracea HOM05D003693 ORTHO05D004698 1.9e-21 105.5 82 65.9
BolC7t41766H Brassica oleracea HOM05D003693 ORTHO05D004698 1.9e-21 105.5 82 64.6
BraA03t13480Z Brassica rapa HOM05D003693 ORTHO05D004698 1.9e-21 105.5 82 65.9
BraA07t28609Z Brassica rapa HOM05D003693 ORTHO05D004698 1.9e-21 105.5 82 64.6
SalBow6G5509 Salvia bowleyana HOM05D003693 ORTHO05D004698 1.9e-21 105.5 87 60.9
BcaB03g14607 Brassica carinata HOM05D003693 ORTHO05D004698 2.5e-21 105.1 82 65.9
Carub.0003s2444 Capsella rubella HOM05D003693 ORTHO05D004698 2.5e-21 105.1 86 62.8
Eucgr.H01405 Eucalyptus grandis HOM05D003693 ORTHO05D004698 2.5e-21 105.1 83 66.3
FAN05G2538 Fragaria x ananassa HOM05D003693 ORTHO05D004698 2.5e-21 105.1 84 65.5
Lj1g0027377 Lotus japonicus HOM05D003693 ORTHO05D004698 2.5e-21 105.1 89 60.7
THA.LOC104821617 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 2.5e-21 105.1 80 68.8
Aa31LG8G10790 Aethionema arabicum HOM05D003693 ORTHO05D004698 3.3e-21 104.8 86 61.6
AT3G24090 Arabidopsis thaliana HOM05D003693 ORTHO05D004698 3.3e-21 104.8 86 62.8
Cc02_g28770 Coffea canephora HOM05D003693 ORTHO05D004698 3.3e-21 104.8 89 59.6
Lalb_Chr03g0038731 Lupinus albus HOM05D003693 ORTHO05D004698 4.3e-21 104.4 87 60.9
PGR119G0062 Punica granatum HOM05D003693 ORTHO05D004698 4.3e-21 104.4 86 64.0
MD12G1263800 Malus domestica HOM05D003693 ORTHO05D004698 5.6e-21 104.0 84 64.3
Ca_07998_v3 Cicer arietinum L. HOM05D003693 ORTHO05D004698 7.4e-21 103.6 89 59.6
Medtr7g080270 Medicago truncatula HOM05D003693 ORTHO05D004698 7.4e-21 103.6 89 59.6
TPR.G34077 Trifolium pratense HOM05D003693 ORTHO05D004698 7.4e-21 103.6 89 59.6
Glyma.18G243300 Glycine max HOM05D003693 ORTHO05D004698 9.6e-21 103.2 89 59.6
SalBow6G6742 Salvia bowleyana HOM05D003693 ORTHO05D004698 9.6e-21 103.2 87 59.8
SHI13710 Sapria himalayana HOM05D003693 ORTHO05D004698 1.3e-20 102.8 87 59.8
TPR.G33878 Trifolium pratense HOM05D003693 ORTHO05D004698 1.6e-20 102.4 89 58.4
Glyma.09G249100 Glycine max HOM05D003693 ORTHO05D004698 2.1e-20 102.1 89 58.4
SEGI_39911 Sequoiadendron giganteum HOM05D003693 ORTHO05D004698 2.1e-20 102.1 86 58.1
MD04G1246300 Malus domestica HOM05D003693 ORTHO05D004698 2.8e-20 101.7 84 64.3
vmacro13696 Vaccinium macrocarpon HOM05D003693 ORTHO05D004698 3.7e-20 101.3 104 56.7
arahy.Tifrunner.gnm1.ann1.55VZFW Arachis hypogaea HOM05D003693 ORTHO05D004698 4.8e-20 100.9 89 58.4
arahy.Tifrunner.gnm1.ann1.RCZ69X Arachis hypogaea HOM05D003693 ORTHO05D004698 4.8e-20 100.9 89 58.4
Nitab4.5_0001676g0080 Nicotiana tabacum HOM05D003693 ORTHO05D004698 6.2e-20 100.5 86 60.5
Prupe.6G362600 Prunus persica HOM05D003693 ORTHO05D004698 6.2e-20 100.5 84 63.1
Eucgr.H01634 Eucalyptus grandis HOM05D003693 ORTHO05D004698 8.1e-20 100.1 83 63.9
Phvul.008G053200 Phaseolus vulgaris HOM05D003693 ORTHO05D004698 8.1e-20 100.1 89 59.6
Pp3c2_32740 Physcomitrium patens HOM05D003693 ORTHO05D004698 1.1e-19 99.8 84 58.3
VMungo1383G0289 Vigna mungo HOM05D003693 ORTHO05D004698 1.1e-19 99.8 89 59.6
AL3G39260 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 1.4e-19 99.4 86 60.5
AL8G20490 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 1.4e-19 99.4 86 60.5
PGR031G3615 Punica granatum HOM05D003693 ORTHO05D004698 1.4e-19 99.4 86 59.3
Aqoxy2G01319 Aquilegia oxysepala HOM05D003693 ORTHO05D031300 7.6e-18 93.6 73 64.4
AagrBONN_evm.TU.Sc2ySwM_344.1788 Anthoceros agrestis HOM05D003693 ORTHO05D004698 1.7e-17 92.4 83 56.6
Pp3c1_10100 Physcomitrium patens HOM05D003693 ORTHO05D004698 4.9e-17 90.9 83 53.0
PRCOL_00001226 Prasinoderma coloniale HOM05D003693 ORTHO05D004698 1.6e-15 85.9 89 47.2
Eucgr.H01633 Eucalyptus grandis HOM05D003693 ORTHO05D004698 2.1e-15 85.5 70 65.7
Haze_19361 Corylus avellana HOM05D003693 ORTHO05D004698 7.4e-13 77.0 173 34.1
SalBow5G4957 Salvia bowleyana HOM05D003693 ORTHO05D004698 3.7e-12 74.7 55 63.6
Eucgr.H01403 Eucalyptus grandis HOM05D003693 ORTHO05D004698 5.8e-10 67.4 74 56.8
MCO09G229 Micromonas commoda HOM05D003693 ORTHO05D004698 1.7e-09 65.9 86 39.5
Cre08.g375500 Chlamydomonas reinhardtii HOM05D003693 ORTHO05D004698 1.1e-08 63.2 72 43.1
CDE04G0915 Ceratophyllum demersum HOM05D003693 ORTHO05D021141 1.6e-07 59.3 40 67.5
CDE07G2079 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 1.6e-07 59.3 40 67.5
Haze_26883 Corylus avellana HOM05D003693 ORTHO05D004698 1.6e-07 59.3 75 37.3
Cc00_g27460 Coffea canephora HOM05D003693 ORTHO05D004698 3.5e-07 58.2 51 60.8


User provided reference genes

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