Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0133200 Oryza sativa ssp. japonica HOM05D006895 ORTHO05D008605 4.6e-99 365.2 180 100.0
Os03g0597200 Oryza sativa ssp. japonica HOM05D006895 ORTHO05D008605 2.2e-77 293.1 181 85.1
Zm00001eb043060 Zea mays HOM05D006895 ORTHO05D008605 4.4e-41 172.6 131 68.7
Aqoxy3G03023 Aquilegia oxysepala HOM05D006895 ORTHO05D008605 7.8e-22 108.6 131 43.5
Ciclev10013605m.g Citrus clementina HOM05D006895 ORTHO05D008605 1.6e-19 100.9 134 37.3
Nn8g40743 Nelumbo nucifera HOM05D006895 ORTHO05D008605 4.7e-19 99.4 134 38.1
Manes.08G078400 Manihot esculenta HOM05D006895 ORTHO05D008605 1.1e-18 98.2 135 36.3
MBI14_g24311_MAGBIO Magnolia biondii HOM05D006895 ORTHO05D008605 1.4e-18 97.8 135 40.7
Eucgr.K03156 Eucalyptus grandis HOM05D006895 ORTHO05D008605 1.8e-18 97.4 135 39.3
CDE04G3188 Ceratophyllum demersum HOM05D006895 ORTHO05D008605 2.3e-18 97.1 135 37.8
Rhsim04G0155200 Rhododendron simsii HOM05D006895 ORTHO05D008605 5.2e-18 95.9 135 40.0
Atru.BG.222.p Acer truncatum HOM05D006895 ORTHO05D008605 8.9e-18 95.1 134 38.1
Lj2C99T13 Lonicera japonica HOM05D006895 ORTHO05D008605 8.9e-18 95.1 136 37.5
TAR636G1679 Trochodendron aralioides HOM05D006895 ORTHO05D008605 8.9e-18 95.1 135 37.8
QL05p010620 Quercus lobata HOM05D006895 ORTHO05D008605 1.2e-17 94.7 134 37.3
QL07p047413 Quercus lobata HOM05D006895 ORTHO05D008605 1.2e-17 94.7 134 37.3
TAR633G1621 Trochodendron aralioides HOM05D006895 ORTHO05D008605 1.2e-17 94.7 134 38.8
ClCG04G008380 Citrullus lanatus HOM05D006895 ORTHO05D008605 2.0e-17 94.0 134 37.3
EL10Ac8g18760 Beta vulgaris HOM05D006895 ORTHO05D008605 2.6e-17 93.6 135 39.3
CSS0020348 Camellia sinensis var. sinensis HOM05D006895 ORTHO05D008605 2.6e-17 93.6 134 38.1
CiPaw.10G143400 Carya illinoinensis HOM05D006895 ORTHO05D008605 3.4e-17 93.2 135 37.0
Haze_20748 Corylus avellana HOM05D006895 ORTHO05D008605 3.4e-17 93.2 133 36.8
Gohir.D04G119700 Gossypium hirsutum HOM05D006895 ORTHO05D008605 3.4e-17 93.2 134 35.1
Gorai.012G101800 Gossypium raimondii HOM05D006895 ORTHO05D008605 3.4e-17 93.2 134 35.1
Thecc.05G043800 Theobroma cacao HOM05D006895 ORTHO05D008605 3.4e-17 93.2 134 35.8
Cfa017422 Carpinus fangiana HOM05D006895 ORTHO05D008605 4.4e-17 92.8 134 35.8
Prupe.6G250800 Prunus persica HOM05D006895 ORTHO05D008605 4.4e-17 92.8 135 37.0
PSO339G3203 Papaver somniferum HOM05D006895 ORTHO05D008605 5.8e-17 92.4 134 37.3
PSO648G0005 Papaver somniferum HOM05D006895 ORTHO05D008605 5.8e-17 92.4 134 35.8
PGR004G1128 Punica granatum HOM05D006895 ORTHO05D008605 5.8e-17 92.4 134 35.8
Rhsim04G0155400 Rhododendron simsii HOM05D006895 ORTHO05D008605 5.8e-17 92.4 135 39.3
CsaV3_4G024770 Cucumis sativus L. HOM05D006895 ORTHO05D008605 7.5e-17 92.0 134 37.3
DCAR_009247 Daucus carota HOM05D006895 ORTHO05D008605 7.5e-17 92.0 134 35.8
Dinv35630 Davidia involucrata HOM05D006895 ORTHO05D008605 7.5e-17 92.0 135 36.3
TWI77G0080 Tripterygium wilfordii HOM05D006895 ORTHO05D008605 1.3e-16 91.3 134 38.1
Carub.0005s2028 Capsella rubella HOM05D006895 ORTHO05D008605 1.7e-16 90.9 137 32.8
MELO3C003111.2 Cucumis melo HOM05D006895 ORTHO05D008605 1.7e-16 90.9 134 36.6
MD12G1138900 Malus domestica HOM05D006895 ORTHO05D008605 1.7e-16 90.9 135 37.0
Rhsim04G0155500 Rhododendron simsii HOM05D006895 ORTHO05D008605 2.2e-16 90.5 135 38.5
THA.LOC104806571 Tarenaya hassleriana HOM05D006895 ORTHO05D008605 2.2e-16 90.5 131 36.6
CSS0025676 Camellia sinensis var. sinensis HOM05D006895 ORTHO05D008605 2.9e-16 90.1 134 37.3
MSTRG.5682 Avicennia marina HOM05D006895 ORTHO05D008605 3.7e-16 89.7 131 37.4
PGSC0003DMG400008927 Solanum tuberosum HOM05D006895 ORTHO05D008605 3.7e-16 89.7 170 32.9
AT3G53700 Arabidopsis thaliana HOM05D006895 ORTHO05D008605 4.9e-16 89.4 140 32.9
Cc06_g02910 Coffea canephora HOM05D006895 ORTHO05D008605 4.9e-16 89.4 135 36.3
Sed0013405 Sechium edule HOM05D006895 ORTHO05D008605 4.9e-16 89.4 131 37.4
Migut.J00352 Erythranthe guttata HOM05D006895 ORTHO05D008605 6.4e-16 89.0 131 36.6
Thhalv10010142m.g Eutrema salsugineum HOM05D006895 ORTHO05D008605 8.3e-16 88.6 140 32.1
CARHR163610 Cardamine hirsuta HOM05D006895 ORTHO05D008605 2.4e-15 87.0 140 32.1
Rhsim04G0155700 Rhododendron simsii HOM05D006895 ORTHO05D008605 2.4e-15 87.0 131 39.7
Rhsim04G0155800 Rhododendron simsii HOM05D006895 ORTHO05D008605 2.4e-15 87.0 134 37.3
Oeu049215.1 Olea europaea HOM05D006895 ORTHO05D008605 3.2e-15 86.7 131 35.9
SalBow3G1315 Salvia bowleyana HOM05D006895 ORTHO05D008605 3.2e-15 86.7 131 36.6
Sp5g08680 Schrenkiella parvula HOM05D006895 ORTHO05D008605 5.4e-15 85.9 139 31.7
AL5G34670 Arabidopsis lyrata HOM05D006895 ORTHO05D008605 7.1e-15 85.5 129 33.3
CAN.G97.15 Capsicum annuum HOM05D006895 ORTHO05D008605 9.2e-15 85.1 174 32.2
Duzib128G0849 Durio zibethinus HOM05D006895 ORTHO05D008605 9.2e-15 85.1 134 33.6
Nitab4.5_0003267g0080 Nicotiana tabacum HOM05D006895 ORTHO05D008605 9.2e-15 85.1 131 36.6
Ah.09g224140 Amaranthus hybridus HOM05D006895 ORTHO05D008605 1.2e-14 84.7 136 35.3
ECA248G3443 Erigeron canadensis HOM05D006895 ORTHO05D008605 2.7e-14 83.6 140 33.6
Nitab4.5_0002077g0070 Nicotiana tabacum HOM05D006895 ORTHO05D008605 2.7e-14 83.6 131 35.9
Aa31LG10G9340 Aethionema arabicum HOM05D006895 ORTHO05D008605 3.5e-14 83.2 125 32.8
HanXRQChr11g0349291 Helianthus annuus HOM05D006895 ORTHO05D008605 3.5e-14 83.2 136 33.8
Sc01g0004190 Simmondsia chinensis HOM05D006895 ORTHO05D008605 3.5e-14 83.2 135 36.3
FvH4_6g14250 Fragaria vesca HOM05D006895 ORTHO05D008605 4.6e-14 82.8 135 35.6
FAN05G0539 Fragaria x ananassa HOM05D006895 ORTHO05D008605 4.6e-14 82.8 135 35.6
FAN14G2414 Fragaria x ananassa HOM05D006895 ORTHO05D008605 4.6e-14 82.8 135 35.6
Sopen09g005190 Solanum pennellii HOM05D006895 ORTHO05D008605 6.0e-14 82.4 131 35.1
BolC4t25457H Brassica oleracea HOM05D006895 ORTHO05D008605 7.8e-14 82.0 123 34.1
AUR62020014 Chenopodium quinoa HOM05D006895 ORTHO05D008605 1.3e-13 81.3 105 38.1
Solyc09g010450.1 Solanum lycopersicum HOM05D006895 ORTHO05D008605 1.3e-13 81.3 170 31.8
BcaC02g09140 Brassica carinata HOM05D006895 ORTHO05D008605 1.7e-13 80.9 123 33.3
C04p38850 Brassica napus HOM05D006895 ORTHO05D008605 1.7e-13 80.9 123 33.3
FAN09G2819 Fragaria x ananassa HOM05D006895 ORTHO05D008605 1.7e-13 80.9 135 35.6
Lsat_1_v5_gn_1_55640 Lactuca sativa HOM05D006895 ORTHO05D008605 1.7e-13 80.9 135 30.4
BraA04t16297Z Brassica rapa HOM05D006895 ORTHO05D008605 2.3e-13 80.5 161 28.0
CANSAT80G0660 Cannabis sativa HOM05D006895 ORTHO05D008605 5.1e-13 79.3 137 32.8
Lalb_Chr02g0153051 Lupinus albus HOM05D006895 ORTHO05D008605 1.5e-12 77.8 131 33.6
HanXRQChr01g0026741 Helianthus annuus HOM05D006895 ORTHO05D008605 1.9e-12 77.4 132 33.3
SGA_v2.0_scaffold126G33815 Striga asiatica HOM05D006895 ORTHO05D008605 5.6e-12 75.9 134 32.1
SGA_v2.0_scaffold126G33817 Striga asiatica HOM05D006895 ORTHO05D008605 5.6e-12 75.9 134 33.6
BcaB02g08515 Brassica carinata HOM05D006895 ORTHO05D008605 1.2e-11 74.7 127 32.3
A04p05930 Brassica napus HOM05D006895 ORTHO05D008605 1.2e-11 74.7 156 27.6
Glyma.10G043900 Glycine max HOM05D006895 ORTHO05D008605 1.2e-11 74.7 145 31.7
ATR0559G329 Amborella trichopoda HOM05D006895 ORTHO05D008605 2.0e-09 67.4 126 31.0
vmacro08665 Vaccinium macrocarpon HOM05D006895 ORTHO05D008605 2.6e-09 67.0 128 32.0
GSVIVG01025524001 Vitis vinifera HOM05D006895 ORTHO05D008605 4.4e-09 66.2 84 39.3
Lj5g0004082 Lotus japonicus HOM05D006895 ORTHO05D008605 7.6e-09 65.5 130 27.7
MD04G1122700 Malus domestica HOM05D006895 ORTHO05D008605 8.4e-08 62.0 91 34.1
SEGI_37919 Sequoiadendron giganteum HOM05D006895 ORTHO05D008605 1.1e-07 61.6 137 30.7
TWI09G0724 Tripterygium wilfordii HOM05D007409 ORTHO05D009264 7.1e-07 58.9 137 26.3
Psat6g065880 Pisum sativum HOM05D006895 ORTHO05D008605 7.8e-06 55.5 134 26.1


User provided reference genes

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