Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0132400 Oryza sativa ssp. japonica HOM05D005022 ORTHO05D002200 3.3e-25 117.5 55 100.0
Os12g0129000 Oryza sativa ssp. japonica HOM05D005022 ORTHO05D002200 3.3e-25 117.5 55 100.0
HPP92_007847 Vanilla planifolia HOM05D005022 ORTHO05D002200 4.2e-20 100.5 55 85.5
CANSAT64G2922 Cannabis sativa HOM05D005022 ORTHO05D002200 1.2e-19 99.0 55 83.6
CDE02G1391 Ceratophyllum demersum HOM05D005022 ORTHO05D002200 1.2e-19 99.0 55 83.6
Oeu023719.1 Olea europaea HOM05D005022 ORTHO05D002200 3.5e-19 97.4 55 83.6
Rhsim07G0089800 Rhododendron simsii HOM05D005022 ORTHO05D002200 3.5e-19 97.4 55 83.6
Rhsim10G0035600 Rhododendron simsii HOM05D005022 ORTHO05D002200 3.5e-19 97.4 55 83.6
RcHm_v2.0_Chr2g0167041 Rosa chinensis HOM05D005022 ORTHO05D002200 3.5e-19 97.4 55 83.6
Prupe.3G262800 Prunus persica HOM05D005022 ORTHO05D002200 4.6e-19 97.1 55 83.6
TWI60G0052 Tripterygium wilfordii HOM05D005022 ORTHO05D002200 6.0e-19 96.7 55 81.8
TAR629G0139 Trochodendron aralioides HOM05D005022 ORTHO05D002200 7.9e-19 96.3 54 85.2
Gohir.A11G070800 Gossypium hirsutum HOM05D005022 ORTHO05D002200 1.0e-18 95.9 55 80.0
Gohir.D11G074700 Gossypium hirsutum HOM05D005022 ORTHO05D002200 1.0e-18 95.9 55 80.0
Gorai.007G080300 Gossypium raimondii HOM05D005022 ORTHO05D002200 1.0e-18 95.9 55 80.0
AUR62026682 Chenopodium quinoa HOM05D005022 ORTHO05D002200 1.3e-18 95.5 55 80.0
AUR62040591 Chenopodium quinoa HOM05D005022 ORTHO05D002200 1.3e-18 95.5 55 80.0
TWI34G0511 Tripterygium wilfordii HOM05D005022 ORTHO05D002200 1.3e-18 95.5 54 83.3
TWI34G1044 Tripterygium wilfordii HOM05D005022 ORTHO05D002200 1.3e-18 95.5 54 83.3
Dinv41801 Davidia involucrata HOM05D005022 ORTHO05D002200 1.8e-18 95.1 54 83.3
FAN09G0227 Fragaria x ananassa HOM05D005022 ORTHO05D002200 1.8e-18 95.1 55 80.0
CSS0002409 Camellia sinensis var. sinensis HOM05D005022 ORTHO05D002200 2.3e-18 94.7 55 80.0
CANSAT78G1165 Cannabis sativa HOM05D005022 ORTHO05D002200 2.3e-18 94.7 55 80.0
CARHR152330 Cardamine hirsuta HOM05D005022 ORTHO05D002200 2.3e-18 94.7 55 80.0
Ciclev10013833m.g Citrus clementina HOM05D005022 ORTHO05D002200 2.3e-18 94.7 54 81.5
Haze_14492 Corylus avellana HOM05D005022 ORTHO05D002200 2.3e-18 94.7 55 80.0
Sed0016737 Sechium edule HOM05D005022 ORTHO05D002200 2.3e-18 94.7 55 78.2
Thecc.04G088000 Theobroma cacao HOM05D005022 ORTHO05D002200 2.3e-18 94.7 55 80.0
Duzib147G1375 Durio zibethinus HOM05D005022 ORTHO05D002200 3.0e-18 94.4 55 80.0
FvH4_6g47840 Fragaria vesca HOM05D005022 ORTHO05D002200 3.0e-18 94.4 55 80.0
FAN05G3245 Fragaria x ananassa HOM05D005022 ORTHO05D002200 3.0e-18 94.4 55 80.0
FAN14G5329 Fragaria x ananassa HOM05D005022 ORTHO05D002200 3.0e-18 94.4 55 80.0
Hma1.2p1_0325F.1_g125800 Hydrangea macrophylla HOM05D005022 ORTHO05D002200 3.0e-18 94.4 55 81.8
MD09G1056300 Malus domestica HOM05D005022 ORTHO05D002200 3.0e-18 94.4 55 80.0
Phvul.002G129000 Phaseolus vulgaris HOM05D005022 ORTHO05D002200 3.0e-18 94.4 55 76.4
QL02p084958 Quercus lobata HOM05D005022 ORTHO05D002200 3.0e-18 94.4 54 79.6
Sc11g0004910 Simmondsia chinensis HOM05D005022 ORTHO05D002200 3.0e-18 94.4 55 80.0
Actinidia26238 Actinidia chinensis HOM05D005022 ORTHO05D002200 3.9e-18 94.0 55 80.0
Cc05_g15190 Coffea canephora HOM05D005022 ORTHO05D002200 3.9e-18 94.0 55 78.2
Thhalv10005146m.g Eutrema salsugineum HOM05D005022 ORTHO05D002200 3.9e-18 94.0 55 78.2
Solyc07g065740.3 Solanum lycopersicum HOM05D005022 ORTHO05D002200 3.9e-18 94.0 55 78.2
Sopen07g033950 Solanum pennellii HOM05D005022 ORTHO05D002200 3.9e-18 94.0 55 78.2
THA.LOC104823702 Tarenaya hassleriana HOM05D005022 ORTHO05D002200 3.9e-18 94.0 55 76.4
arahy.Tifrunner.gnm1.ann1.72TST8 Arachis hypogaea HOM05D005022 ORTHO05D002200 5.1e-18 93.6 55 76.4
arahy.Tifrunner.gnm1.ann1.I9NK4S Arachis hypogaea HOM05D005022 ORTHO05D002200 5.1e-18 93.6 55 76.4
CiPaw.03G278100 Carya illinoinensis HOM05D005022 ORTHO05D002200 5.1e-18 93.6 55 78.2
Ca_00478_v3 Cicer arietinum L. HOM05D005022 ORTHO05D002200 5.1e-18 93.6 55 76.4
Sed0010256 Sechium edule HOM05D005022 ORTHO05D002200 5.1e-18 93.6 55 76.4
THA.LOC104823026 Tarenaya hassleriana HOM05D005022 ORTHO05D002200 5.1e-18 93.6 55 76.4
vmacro16388 Vaccinium macrocarpon HOM05D005022 ORTHO05D002200 5.1e-18 93.6 55 80.0
BcaB07g30093 Brassica carinata HOM05D005022 ORTHO05D002200 6.7e-18 93.2 54 79.6
BcaC03g17565 Brassica carinata HOM05D005022 ORTHO05D002200 6.7e-18 93.2 54 79.6
BcaC06g30883 Brassica carinata HOM05D005022 ORTHO05D002200 6.7e-18 93.2 54 79.6
A02p36420 Brassica napus HOM05D005022 ORTHO05D002200 6.7e-18 93.2 54 79.6
C02p55350 Brassica napus HOM05D005022 ORTHO05D002200 6.7e-18 93.2 54 79.6
BolC2t11592H Brassica oleracea HOM05D005022 ORTHO05D002200 6.7e-18 93.2 54 79.6
BraA02t08639Z Brassica rapa HOM05D005022 ORTHO05D002200 6.7e-18 93.2 54 79.6
Glyma.13G225600 Glycine max HOM05D005022 ORTHO05D002200 6.7e-18 93.2 55 76.4
Glyma.15G086500 Glycine max HOM05D005022 ORTHO05D002200 6.7e-18 93.2 55 76.4
Lalb_Chr15g0086431 Lupinus albus HOM05D005022 ORTHO05D002200 6.7e-18 93.2 55 76.4
Nn4g23286 Nelumbo nucifera HOM05D005022 ORTHO05D002200 6.7e-18 93.2 55 78.2
Hund02686 Selenicereus undatus HOM05D005022 ORTHO05D002200 6.7e-18 93.2 55 78.2
TPR.G4494 Trifolium pratense HOM05D005022 ORTHO05D002200 6.7e-18 93.2 55 78.2
VMungo0540G0520 Vigna mungo HOM05D005022 ORTHO05D002200 6.7e-18 93.2 55 76.4
MSTRG.15466 Avicennia marina HOM05D005022 ORTHO05D002200 8.7e-18 92.8 55 78.2
AUR62008331 Chenopodium quinoa HOM05D005022 ORTHO05D002200 8.7e-18 92.8 55 78.2
Cpa.g.sc14.131 Carica papaya HOM05D005022 ORTHO05D002200 1.1e-17 92.4 55 80.0
ClCG09G017950 Citrullus lanatus HOM05D005022 ORTHO05D002200 1.1e-17 92.4 55 76.4
MELO3C022011.2 Cucumis melo HOM05D005022 ORTHO05D002200 1.1e-17 92.4 55 76.4
CsaV3_5G038280 Cucumis sativus L. HOM05D005022 ORTHO05D002200 1.1e-17 92.4 55 76.4
Lj6g0010384 Lotus japonicus HOM05D005022 ORTHO05D002200 1.1e-17 92.4 55 76.4
MD17G1053800 Malus domestica HOM05D005022 ORTHO05D002200 1.1e-17 92.4 55 78.2
Medtr2g017920 Medicago truncatula HOM05D005022 ORTHO05D002200 1.1e-17 92.4 55 76.4
PGSC0003DMG400022162 Solanum tuberosum HOM05D005022 ORTHO05D002200 1.1e-17 92.4 55 76.4
Eucgr.I02005 Eucalyptus grandis HOM05D005022 ORTHO05D002200 1.5e-17 92.0 54 79.6
Lalb_Chr01g0010761 Lupinus albus HOM05D005022 ORTHO05D002200 1.5e-17 92.0 55 76.4
Nitab4.5_0004583g0030 Nicotiana tabacum HOM05D005022 ORTHO05D002200 1.5e-17 92.0 55 78.2
Nitab4.5_0013922g0020 Nicotiana tabacum HOM05D005022 ORTHO05D002200 1.5e-17 92.0 55 78.2
Phvul.006G171600 Phaseolus vulgaris HOM05D005022 ORTHO05D002200 1.5e-17 92.0 55 74.5
Potri.006G053300 Populus trichocarpa HOM05D005022 ORTHO05D002200 1.5e-17 92.0 55 76.4
Sp2g17780 Schrenkiella parvula HOM05D005022 ORTHO05D002200 1.5e-17 92.0 54 77.8
Ah.02g113030 Amaranthus hybridus HOM05D005022 ORTHO05D002200 1.9e-17 91.7 55 76.4
Aqoxy5G02989 Aquilegia oxysepala HOM05D005022 ORTHO05D002200 1.9e-17 91.7 55 80.0
AL5G19080 Arabidopsis lyrata HOM05D005022 ORTHO05D002200 1.9e-17 91.7 55 76.4
AT3G29170 Arabidopsis thaliana HOM05D005022 ORTHO05D002200 1.9e-17 91.7 55 76.4
BcaC06g33675 Brassica carinata HOM05D005022 ORTHO05D002200 1.9e-17 91.7 54 77.8
BolC7t44329H Brassica oleracea HOM05D005022 ORTHO05D002200 1.9e-17 91.7 54 77.8
BraA06t26924Z Brassica rapa HOM05D005022 ORTHO05D002200 1.9e-17 91.7 54 77.8
Carub.0005s0790 Capsella rubella HOM05D005022 ORTHO05D002200 1.9e-17 91.7 55 76.4
Cc07_g03690 Coffea canephora HOM05D005022 ORTHO05D002200 1.9e-17 91.7 54 81.5
COL.COLO4_12232 Corchorus olitorius HOM05D005022 ORTHO05D002200 1.9e-17 91.7 55 76.4
Migut.K01301 Erythranthe guttata HOM05D005022 ORTHO05D002200 1.9e-17 91.7 54 79.6
Lj3g0009973 Lotus japonicus HOM05D005022 ORTHO05D002200 1.9e-17 91.7 55 74.5
Manes.06G037100 Manihot esculenta HOM05D005022 ORTHO05D002200 1.9e-17 91.7 55 78.2
Manes.08G085000 Manihot esculenta HOM05D005022 ORTHO05D002200 1.9e-17 91.7 55 78.2
CSS0006095 Camellia sinensis var. sinensis HOM05D005022 ORTHO05D002200 2.5e-17 91.3 55 76.4
Lsat_1_v5_gn_2_89360 Lactuca sativa HOM05D005022 ORTHO05D002200 2.5e-17 91.3 53 79.2
unitig_748.g7266 Utricularia gibba HOM05D005022 ORTHO05D002200 2.5e-17 91.3 54 77.8
Aa31LG2G4070 Aethionema arabicum HOM05D005022 ORTHO05D002200 3.3e-17 90.9 55 76.4
CSS0007983 Camellia sinensis var. sinensis HOM05D005022 ORTHO05D002200 3.3e-17 90.9 55 76.4
AUR62021768 Chenopodium quinoa HOM05D005022 ORTHO05D002200 3.3e-17 90.9 55 76.4
Lsat_1_v5_gn_3_99860 Lactuca sativa HOM05D005022 ORTHO05D002200 3.3e-17 90.9 54 77.8
Hund09378 Selenicereus undatus HOM05D005022 ORTHO05D002200 3.3e-17 90.9 55 78.2
CAN.G623.29 Capsicum annuum HOM05D005022 ORTHO05D002200 4.3e-17 90.5 55 74.5
ECA238G3567 Erigeron canadensis HOM05D005022 ORTHO05D002200 4.3e-17 90.5 55 76.4
Manes.14G112300 Manihot esculenta HOM05D005022 ORTHO05D002200 4.3e-17 90.5 55 76.4
MSTRG.3339 Avicennia marina HOM05D005022 ORTHO05D002200 5.7e-17 90.1 55 76.4
SGA_v2.0_scaffold236G43759 Striga asiatica HOM05D005022 ORTHO05D002200 5.7e-17 90.1 55 74.5
CiPaw.03G021600 Carya illinoinensis HOM05D005022 ORTHO05D002200 7.4e-17 89.7 55 74.5
SGA_v2.0_scaffold1515G53975 Striga asiatica HOM05D005022 ORTHO05D002200 7.4e-17 89.7 55 76.4
DCAR_011073 Daucus carota HOM05D005022 ORTHO05D002200 9.6e-17 89.4 53 79.2
Mapoly0001s0441 Marchantia polymorpha HOM05D005022 ORTHO05D002200 9.6e-17 89.4 55 70.9
PSO063G1170 Papaver somniferum HOM05D005022 ORTHO05D002200 9.6e-17 89.4 55 74.5
PSO063G2328 Papaver somniferum HOM05D005022 ORTHO05D002200 9.6e-17 89.4 55 74.5
EL10Ac5g10898 Beta vulgaris HOM05D005022 ORTHO05D002200 1.3e-16 89.0 55 72.7
DCAR_026919 Daucus carota HOM05D005022 ORTHO05D002200 1.6e-16 88.6 55 74.5
PGR004G0139 Punica granatum HOM05D005022 ORTHO05D002200 1.6e-16 88.6 54 74.1
PGR056G0006 Punica granatum HOM05D005022 ORTHO05D002200 1.6e-16 88.6 55 74.5
Sabra06G0037700 Salix brachista HOM05D005022 ORTHO05D002200 2.1e-16 88.2 54 74.1
GSVIVG01011468001 Vitis vinifera HOM05D005022 ORTHO05D002200 2.1e-16 88.2 51 80.4
Dinv33790 Davidia involucrata HOM05D005022 ORTHO05D002200 3.7e-16 87.4 50 82.0
HanXRQChr17g0546151 Helianthus annuus HOM05D005022 ORTHO05D002200 6.2e-16 86.7 51 78.4
Pp3c7_15070 Physcomitrium patens HOM05D005022 ORTHO05D002200 1.1e-15 85.9 55 70.9
HanXRQChr15g0473111 Helianthus annuus HOM05D005022 ORTHO05D002200 2.0e-14 81.6 53 73.6
Mapoly0059s0090 Marchantia polymorpha HOM05D005022 ORTHO05D002200 2.0e-14 81.6 55 67.3
Pp3c18_10200 Physcomitrium patens HOM05D005022 ORTHO05D002200 3.4e-14 80.9 55 63.6
Lj2g0004380 Lotus japonicus HOM05D005022 ORTHO05D002200 1.3e-13 79.0 46 76.1
Lj3g0011454 Lotus japonicus HOM05D005022 ORTHO05D002200 1.3e-13 79.0 46 76.1
SMO340G0185 Selaginella moellendorffii HOM05D005022 ORTHO05D002200 2.2e-13 78.2 54 63.0
CBR_g61519 Chara braunii HOM05D005022 ORTHO05D002200 5.0e-13 77.0 52 61.5
Pp3c11_17600 Physcomitrium patens HOM05D005022 ORTHO05D002200 1.6e-11 72.0 43 74.4
ECA246G0186 Erigeron canadensis HOM05D005022 ORTHO05D002200 7.9e-11 69.7 45 71.1
Sed0009283 Sechium edule HOM05D005022 ORTHO05D002200 8.2e-08 59.7 55 54.5
CAN.G27.34 Capsicum annuum HOM05D005022 ORTHO05D011077 1.4e-07 58.9 39 66.7
CDE11G0792 Ceratophyllum demersum HOM05D005022 ORTHO05D002200 2.4e-07 58.2 54 55.6
Zm00001eb020420 Zea mays HOM05D005022 ORTHO05D002200 3.1e-07 57.8 36 77.8
PRCOL_00000727 Prasinoderma coloniale HOM05D005022 ORTHO05D002200 1.2e-06 55.8 57 45.6
TPR.G32576 Trifolium pratense HOM05D004476 ORTHO05D002200 2.6e-06 54.7 52 42.3
CBR_g46719 Chara braunii HOM05D004476 ORTHO05D002200 3.4e-06 54.3 51 45.1
AUR62031259 Chenopodium quinoa HOM05D004476 ORTHO05D002200 3.4e-06 54.3 53 49.1
Lj2g0010276 Lotus japonicus HOM05D004476 ORTHO05D002200 3.4e-06 54.3 46 43.5
SMO348G0029 Selaginella moellendorffii HOM05D004476 ORTHO05D002200 3.4e-06 54.3 51 45.1
Lj6g0012515 Lotus japonicus HOM05D004476 ORTHO05D002200 4.5e-06 53.9 48 52.1
Medtr2g038550 Medicago truncatula HOM05D004476 ORTHO05D002200 4.5e-06 53.9 46 45.7
BcaB07g31613 Brassica carinata HOM05D004476 ORTHO05D002200 5.9e-06 53.5 52 42.3
BcaC04g22858 Brassica carinata HOM05D004476 ORTHO05D002200 5.9e-06 53.5 52 42.3
Ah.14g086030 Amaranthus hybridus HOM05D004476 ORTHO05D002200 7.7e-06 53.1 53 49.1
arahy.Tifrunner.gnm1.ann1.BX0J8Q Arachis hypogaea HOM05D004476 ORTHO05D002200 7.7e-06 53.1 46 45.7
arahy.Tifrunner.gnm1.ann1.FSCD1Z Arachis hypogaea HOM05D004476 ORTHO05D002200 7.7e-06 53.1 46 45.7
Ca_02141_v3 Cicer arietinum L. HOM05D004476 ORTHO05D002200 7.7e-06 53.1 46 43.5
Manes.04G036000 Manihot esculenta HOM05D004476 ORTHO05D002200 7.7e-06 53.1 53 47.2
Manes.11G129400 Manihot esculenta HOM05D004476 ORTHO05D002200 7.7e-06 53.1 51 41.2
Prupe.1G069900 Prunus persica HOM05D004476 ORTHO05D002200 7.7e-06 53.1 48 52.1
QL11p005289 Quercus lobata HOM05D004476 ORTHO05D002200 7.7e-06 53.1 51 41.2
CiPaw.08G030800 Carya illinoinensis HOM05D004476 ORTHO05D002200 1.0e-05 52.8 48 52.1
COL.COLO4_23446 Corchorus olitorius HOM05D004476 ORTHO05D002200 1.0e-05 52.8 52 44.2
Glyma.09G062200 Glycine max HOM05D004476 ORTHO05D002200 1.0e-05 52.8 46 43.5
Lj4g0004777 Lotus japonicus HOM05D004476 ORTHO05D002200 1.0e-05 52.8 46 43.5
Psat1g142560 Pisum sativum HOM05D004476 ORTHO05D002200 1.0e-05 52.8 46 45.7


User provided reference genes

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