Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 9.2e-37 156.4 79 100.0
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 3.9e-35 151.0 79 96.2
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 1.6e-25 119.0 76 72.4
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 1.3e-22 109.4 76 64.5
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 4.9e-22 107.5 76 61.8
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 6.4e-22 107.1 76 64.5
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 1.9e-21 105.5 76 60.5
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 2.4e-21 105.1 76 61.8
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 5.4e-21 104.0 76 63.2
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 1.2e-20 102.8 76 61.8
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.6e-20 102.4 76 60.5
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 2.7e-20 101.7 76 59.2
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 3.5e-20 101.3 79 59.5
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 3.5e-20 101.3 76 59.2
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 4.6e-20 100.9 73 64.4
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 4.6e-20 100.9 76 59.2
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 7.8e-20 100.1 76 57.9
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 1.3e-19 99.4 76 59.2
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 1.7e-19 99.0 76 57.9
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 2.3e-19 98.6 76 53.9
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 2.3e-19 98.6 76 59.2
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 3.0e-19 98.2 76 55.3
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 3.0e-19 98.2 76 56.6
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 3.9e-19 97.8 73 58.9
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 3.9e-19 97.8 76 59.2
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 3.9e-19 97.8 76 59.2
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 5.1e-19 97.4 76 56.6
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 5.1e-19 97.4 76 57.9
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 5.1e-19 97.4 76 55.3
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 5.1e-19 97.4 76 56.6
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 6.6e-19 97.1 76 57.9
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 8.7e-19 96.7 76 52.6
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 8.7e-19 96.7 76 56.6
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 1.1e-18 96.3 76 57.9
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 1.1e-18 96.3 73 57.5
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 1.1e-18 96.3 74 55.4
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 1.1e-18 96.3 76 53.9
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 1.1e-18 96.3 73 56.2
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 1.1e-18 96.3 77 59.7
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.1e-18 96.3 77 59.7
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 1.5e-18 95.9 76 55.3
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.9e-18 95.5 73 58.9
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 1.9e-18 95.5 73 54.8
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 2.5e-18 95.1 76 56.6
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 2.5e-18 95.1 76 55.3
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 2.5e-18 95.1 76 55.3
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 2.5e-18 95.1 76 55.3
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 2.5e-18 95.1 76 56.6
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 2.5e-18 95.1 77 57.1
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 2.5e-18 95.1 76 55.3
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 2.5e-18 95.1 76 55.3
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 2.5e-18 95.1 76 55.3
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 3.3e-18 94.7 76 56.6
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 3.3e-18 94.7 74 54.1
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 4.3e-18 94.4 73 58.9
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 4.3e-18 94.4 73 56.2
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 4.3e-18 94.4 76 55.3
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 4.3e-18 94.4 74 52.7
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 4.3e-18 94.4 75 60.0
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 4.3e-18 94.4 76 56.6
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 5.6e-18 94.0 76 55.3
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 5.6e-18 94.0 72 55.6
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 5.6e-18 94.0 72 55.6
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 5.6e-18 94.0 76 55.3
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 5.6e-18 94.0 71 56.3
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 5.6e-18 94.0 71 56.3
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 7.3e-18 93.6 76 53.9
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 7.3e-18 93.6 66 59.1
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 7.3e-18 93.6 76 53.9
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 7.3e-18 93.6 76 53.9
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 7.3e-18 93.6 76 57.9
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 9.6e-18 93.2 76 52.6
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.6e-17 92.4 73 53.4
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.6e-17 92.4 73 53.4
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 1.6e-17 92.4 76 55.3
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 1.6e-17 92.4 76 52.6
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 1.6e-17 92.4 76 52.6
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 2.1e-17 92.0 76 52.6
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 2.1e-17 92.0 76 57.9
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 2.1e-17 92.0 76 55.3
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 2.1e-17 92.0 72 59.7
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 2.8e-17 91.7 79 54.4
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 2.8e-17 91.7 79 54.4
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 2.8e-17 91.7 79 54.4
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 2.8e-17 91.7 76 53.9
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 2.8e-17 91.7 76 53.9
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 2.8e-17 91.7 73 52.1
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 3.6e-17 91.3 73 57.5
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 4.8e-17 90.9 73 54.8
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 6.2e-17 90.5 79 53.2
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 6.2e-17 90.5 72 52.8
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 8.1e-17 90.1 73 54.8
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 8.1e-17 90.1 79 53.2
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 8.1e-17 90.1 76 52.6
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.1e-16 89.7 76 52.6
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 1.4e-16 89.4 76 55.3
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 1.8e-16 89.0 76 55.3
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 1.8e-16 89.0 73 57.5
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 2.4e-16 88.6 73 53.4
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 2.4e-16 88.6 73 53.4
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 2.4e-16 88.6 65 60.0
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 3.1e-16 88.2 79 51.9
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 4.0e-16 87.8 76 52.6
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 4.0e-16 87.8 98 45.9
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 6.9e-16 87.0 62 59.7
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 6.9e-16 87.0 76 50.0
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 6.9e-16 87.0 76 50.0
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 9.0e-16 86.7 73 50.7
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 9.0e-16 86.7 76 50.0
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.5e-15 85.9 61 59.0
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 2.0e-15 85.5 68 51.5
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 2.6e-15 85.1 62 59.7
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 3.4e-15 84.7 73 53.4
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 3.4e-15 84.7 80 50.0
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 4.5e-15 84.3 62 56.5
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 5.8e-15 84.0 70 55.7
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 5.8e-15 84.0 76 52.6
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 7.6e-15 83.6 73 54.8
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 7.6e-15 83.6 73 54.8
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 7.6e-15 83.6 73 54.8
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 7.6e-15 83.6 73 54.8
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 9.9e-15 83.2 60 58.3
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 9.9e-15 83.2 76 51.3
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 1.3e-14 82.8 62 58.1
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 2.9e-14 81.6 60 56.7
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 2.9e-14 81.6 72 52.8
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 3.8e-14 81.3 63 54.0
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 4.9e-14 80.9 58 56.9
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 6.4e-14 80.5 65 53.8
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 6.4e-14 80.5 67 49.3
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 6.4e-14 80.5 58 58.6
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 1.9e-13 79.0 79 46.8
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 2.4e-13 78.6 65 52.3
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 2.4e-13 78.6 58 60.3
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 2.7e-12 75.1 70 45.7
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 2.7e-12 75.1 68 54.4
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 3.5e-12 74.7 54 55.6
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 6.0e-12 73.9 49 63.3
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 1.0e-11 73.2 54 57.4
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 1.8e-11 72.4 51 56.9
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 5.3e-08 60.8 66 34.8
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 1.5e-07 59.3 79 36.7
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 2.6e-07 58.5 48 56.2
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 3.4e-07 58.2 68 39.7
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 1.3e-06 56.2 65 38.5


User provided reference genes

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