Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0131100 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 3.1e-72 275.4 182 100.0
Os12g0127800 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 2.2e-49 199.5 192 81.2
Zm00001eb093500 Zea mays HOM05D015271 ORTHO05D004907 2.3e-14 83.2 135 51.9
Zm00001eb128970 Zea mays HOM05D004369 ORTHO05D004907 7.4e-13 78.2 152 43.4
Os01g0278000 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 3.1e-11 72.8 83 51.8
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 5.3e-11 72.0 142 40.1
Zm00001eb405310 Zea mays HOM05D015271 ORTHO05D004907 5.3e-11 72.0 141 44.7
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 9.9e-10 67.8 141 38.3
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 1.7e-09 67.0 131 37.4
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 2.9e-09 66.2 132 43.2
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 2.9e-09 66.2 144 38.2
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 4.9e-09 65.5 132 35.6
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 4.9e-09 65.5 134 37.3
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 6.4e-09 65.1 135 37.0
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 6.4e-09 65.1 159 34.6
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 8.4e-09 64.7 151 38.4
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 8.4e-09 64.7 141 39.0
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 1.1e-08 64.3 147 34.0
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 1.4e-08 63.9 160 35.0
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 1.9e-08 63.5 139 36.0
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 1.9e-08 63.5 138 35.5
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 1.9e-08 63.5 134 37.3
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 1.9e-08 63.5 150 34.0
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 1.9e-08 63.5 148 35.8
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 2.4e-08 63.2 145 33.8
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 2.4e-08 63.2 142 35.9
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 3.2e-08 62.8 148 33.1
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 3.2e-08 62.8 147 38.8
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 3.2e-08 62.8 155 33.5
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 3.2e-08 62.8 148 33.1
Zm00001eb395510 Zea mays HOM05D015271 ORTHO05D020944 3.2e-08 62.8 131 35.9
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 4.2e-08 62.4 136 37.5
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 5.5e-08 62.0 141 34.8
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 5.5e-08 62.0 143 33.6
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 5.5e-08 62.0 141 34.0
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 5.5e-08 62.0 131 38.2
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 7.1e-08 61.6 145 34.5
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 7.1e-08 61.6 143 35.0
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 7.1e-08 61.6 137 36.5
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 9.3e-08 61.2 136 39.0
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 9.3e-08 61.2 131 38.9
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 9.3e-08 61.2 149 33.6
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 9.3e-08 61.2 141 35.5
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 9.3e-08 61.2 133 36.8
HPP92_014347 Vanilla planifolia HOM05D004369 ORTHO05D004907 9.3e-08 61.2 87 48.3
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 1.2e-07 60.8 147 38.1
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 1.2e-07 60.8 143 34.3
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 1.6e-07 60.5 136 36.0
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 1.6e-07 60.5 144 35.4
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 2.1e-07 60.1 135 34.8
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 2.1e-07 60.1 142 34.5
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 2.1e-07 60.1 135 35.6
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 2.1e-07 60.1 139 36.0
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 2.1e-07 60.1 137 38.0
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 2.7e-07 59.7 142 35.9
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 2.7e-07 59.7 150 35.3
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 3.5e-07 59.3 131 39.7
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 3.5e-07 59.3 140 37.9
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 3.5e-07 59.3 142 35.9
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 3.5e-07 59.3 150 33.3
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 3.5e-07 59.3 144 33.3
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 6.0e-07 58.5 141 34.8
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 6.0e-07 58.5 87 44.8
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 6.0e-07 58.5 128 35.9
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 6.0e-07 58.5 128 35.9
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 6.0e-07 58.5 83 47.0
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 6.0e-07 58.5 153 31.4
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 7.9e-07 58.2 140 34.3
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 7.9e-07 58.2 146 34.2
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 1.3e-06 57.4 132 37.9
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 1.3e-06 57.4 136 33.8
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.3e-06 57.4 149 36.2
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 1.3e-06 57.4 153 34.0
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 1.3e-06 57.4 153 34.0
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 1.3e-06 57.4 137 38.0
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 1.8e-06 57.0 146 32.9
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.8e-06 57.0 128 35.2
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 1.8e-06 57.0 154 31.2
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.8e-06 57.0 140 37.1
HPP92_028709 Vanilla planifolia HOM05D004369 ORTHO05D004907 1.8e-06 57.0 95 43.2
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 2.3e-06 56.6 141 35.5
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 2.3e-06 56.6 134 36.6
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 2.3e-06 56.6 146 32.9
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 2.3e-06 56.6 83 44.6
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 2.3e-06 56.6 153 32.7
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 2.3e-06 56.6 83 45.8
Zm00001eb015250 Zea mays HOM05D015271 ORTHO05D020944 2.3e-06 56.6 131 33.6
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 3.0e-06 56.2 141 34.8
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 3.0e-06 56.2 142 36.6
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 3.0e-06 56.2 141 34.8
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 3.0e-06 56.2 141 34.8
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 3.0e-06 56.2 143 32.9
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 3.9e-06 55.8 84 44.0
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 5.1e-06 55.5 139 33.8
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 6.7e-06 55.1 83 42.2
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 6.7e-06 55.1 83 42.2
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 6.7e-06 55.1 80 45.0
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 8.7e-06 54.7 142 35.2
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 8.7e-06 54.7 142 35.2
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 8.7e-06 54.7 142 35.2
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 8.7e-06 54.7 133 33.8
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 8.7e-06 54.7 84 42.9
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 8.7e-06 54.7 152 34.9


User provided reference genes

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