Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0129800 Oryza sativa ssp. japonica HOM05D007286 ORTHO05D008955 7.8e-254 880.2 510 100.0
Zm00001eb093550 Zea mays HOM05D007286 ORTHO05D008955 4.8e-110 402.5 594 47.8
MBI19_g06405_MAGBIO Magnolia biondii HOM05D007286 ORTHO05D008955 6.6e-43 179.5 261 44.1
TAR555G0002 Trochodendron aralioides HOM05D007286 ORTHO05D008955 4.3e-42 176.8 258 44.6
Nn7g37274 Nelumbo nucifera HOM05D007286 ORTHO05D008955 8.9e-40 169.1 261 44.8
Dinv20486 Davidia involucrata HOM05D007286 ORTHO05D008955 1.0e-35 155.6 256 41.0
Hma1.2p1_0233F.1_g097980 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 1.5e-34 151.8 259 39.8
Potri.010G247100 Populus trichocarpa HOM05D007286 ORTHO05D008955 2.5e-34 151.0 261 38.3
Ciclev10000662m.g Citrus clementina HOM05D007286 ORTHO05D008955 4.3e-34 150.2 260 40.0
Prupe.2G060300 Prunus persica HOM05D007286 ORTHO05D008955 7.3e-34 149.4 262 39.3
CANSAT56G1680 Cannabis sativa HOM05D007286 ORTHO05D008955 1.2e-33 148.7 259 38.2
Sabra10G0192500 Salix brachista HOM05D007286 ORTHO05D008955 1.2e-33 148.7 261 38.3
Aqoxy1G00088 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 1.6e-33 148.3 263 39.9
CANSAT56G4194 Cannabis sativa HOM05D007286 ORTHO05D008955 3.6e-33 147.1 259 38.2
CDE04G1177 Ceratophyllum demersum HOM05D007286 ORTHO05D008955 4.7e-33 146.7 257 38.1
TPR.G36317 Trifolium pratense HOM05D007286 ORTHO05D008955 4.7e-33 146.7 257 38.5
Medtr8g044120 Medicago truncatula HOM05D007286 ORTHO05D008955 1.1e-32 145.6 255 38.8
MD02G1265200 Malus domestica HOM05D007286 ORTHO05D008955 4.0e-32 143.7 263 39.2
Sabra08G0007300 Salix brachista HOM05D007286 ORTHO05D008955 8.9e-32 142.5 266 38.3
Potri.008G012000 Populus trichocarpa HOM05D007286 ORTHO05D008955 4.4e-31 140.2 264 39.0
FAN10G3167 Fragaria x ananassa HOM05D007286 ORTHO05D008955 5.8e-31 139.8 255 37.3
FAN06G0358 Fragaria x ananassa HOM05D007286 ORTHO05D008955 1.7e-30 138.3 259 37.5
RcHm_v2.0_Chr1g0331161 Rosa chinensis HOM05D007286 ORTHO05D008955 1.7e-30 138.3 259 38.6
FAN03G1022 Fragaria x ananassa HOM05D007286 ORTHO05D008955 2.9e-30 137.5 255 37.3
FvH4_7g04960 Fragaria vesca HOM05D007286 ORTHO05D008955 4.9e-30 136.7 259 37.5
ATR0307G001 Amborella trichopoda HOM05D007286 ORTHO05D008955 1.4e-29 135.2 269 37.2
Psat4g141960 Pisum sativum HOM05D007286 ORTHO05D008955 1.9e-29 134.8 255 36.9
COL.COLO4_28923 Corchorus olitorius HOM05D007286 ORTHO05D008955 2.4e-29 134.4 260 38.1
HanXRQChr07g0192711 Helianthus annuus HOM05D007286 ORTHO05D008955 2.4e-29 134.4 254 37.0
Gohir.A05G285500 Gossypium hirsutum HOM05D007286 ORTHO05D008955 4.1e-29 133.7 262 35.5
Manes.10G063001 Manihot esculenta HOM05D000188 ORTHO05D000362 4.1e-29 133.7 258 37.6
Gohir.D05G286600 Gossypium hirsutum HOM05D007286 ORTHO05D008955 7.0e-29 132.9 262 35.5
TWI38G1128 Tripterygium wilfordii HOM05D007286 ORTHO05D008955 9.2e-29 132.5 264 38.6
Lj3g0009162 Lotus japonicus HOM05D007286 ORTHO05D008955 1.6e-28 131.7 255 37.6
PSO339G4644 Papaver somniferum HOM05D007286 ORTHO05D008955 1.6e-28 131.7 545 29.4
Gorai.009G301600 Gossypium raimondii HOM05D007286 ORTHO05D008955 3.5e-28 130.6 262 35.1
Thecc.10G130100 Theobroma cacao HOM05D007286 ORTHO05D008955 3.5e-28 130.6 265 37.7
Atru.chr12.1143 Acer truncatum HOM05D007286 ORTHO05D008955 4.6e-28 130.2 259 38.2
Glyma.08G227900 Glycine max HOM05D007286 ORTHO05D008955 7.8e-28 129.4 565 29.7
Peaxi162Scf00647g00320 Petunia axillaris HOM05D007286 ORTHO05D008955 1.0e-27 129.0 265 37.7
Actinidia12136 Actinidia chinensis HOM05D007286 ORTHO05D008955 1.3e-27 128.6 260 38.5
Oeu013048.2 Olea europaea HOM05D007286 ORTHO05D008955 1.7e-27 128.3 267 35.6
VMungo1127G2168 Vigna mungo HOM05D007286 ORTHO05D008955 2.3e-27 127.9 265 36.2
Phvul.011G187500 Phaseolus vulgaris HOM05D007286 ORTHO05D008955 3.0e-27 127.5 565 30.1
Solyc01g096890.4 Solanum lycopersicum HOM05D007286 ORTHO05D008955 3.9e-27 127.1 260 36.9
Eucgr.G02637 Eucalyptus grandis HOM05D007286 ORTHO05D008955 6.6e-27 126.3 266 36.8
Lalb_Chr19g0132561 Lupinus albus HOM05D007286 ORTHO05D008955 8.6e-27 125.9 583 29.0
PGR142G0126 Punica granatum HOM05D007286 ORTHO05D008955 1.9e-26 124.8 257 37.4
GSVIVG01027344001 Vitis vinifera HOM05D007286 ORTHO05D008955 5.6e-26 123.2 577 29.8
Lsat_1_v5_gn_5_41960 Lactuca sativa HOM05D007286 ORTHO05D008955 9.5e-26 122.5 256 35.5
Sopen01g040600 Solanum pennellii HOM05D007286 ORTHO05D008955 9.5e-26 122.5 258 36.8
Duzib128G1558 Durio zibethinus HOM05D000138 ORTHO05D008955 4.7e-25 120.2 264 36.7
ECA246G2791 Erigeron canadensis HOM05D000076 ORTHO05D002730 4.7e-25 120.2 220 37.7
PGSC0003DMG401027501 Solanum tuberosum HOM05D007286 ORTHO05D008955 8.1e-25 119.4 260 36.2
QL04p050581 Quercus lobata HOM05D007286 ORTHO05D008955 1.1e-24 119.0 592 28.4
Cpa.g.sc54.34 Carica papaya HOM05D007286 ORTHO05D008955 1.4e-24 118.6 121 57.0
CiPaw.13G047300 Carya illinoinensis HOM05D007286 ORTHO05D008955 3.1e-24 117.5 257 37.0
MSTRG.20479 Avicennia marina HOM05D007286 ORTHO05D008955 4.0e-24 117.1 544 28.1
CSS0007228 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 8.9e-24 115.9 578 27.7
CSS0046865 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D008955 8.9e-24 115.9 578 27.7
EL10Ac4g08793 Beta vulgaris HOM05D007286 ORTHO05D008955 1.2e-23 115.5 258 34.5
Nitab4.5_0001611g0060 Nicotiana tabacum HOM05D007286 ORTHO05D008955 1.2e-23 115.5 271 35.1
CAN.G134.51 Capsicum annuum HOM05D007286 ORTHO05D008955 2.0e-23 114.8 258 34.1
Hma1.2p1_2056F.1_g312790 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 4.4e-23 113.6 168 44.0
Rhsim07G0072400 Rhododendron simsii HOM05D007286 ORTHO05D008955 7.5e-23 112.8 573 27.7
Sc09g0004920 Simmondsia chinensis HOM05D007286 ORTHO05D008955 8.3e-22 109.4 265 34.0
Ca_12172_v3 Cicer arietinum L. HOM05D007286 ORTHO05D008955 1.1e-21 109.0 123 52.8
arahy.Tifrunner.gnm1.ann1.5NH7JH Arachis hypogaea HOM05D007286 ORTHO05D008955 1.4e-21 108.6 592 27.0
Nitab4.5_0005056g0090 Nicotiana tabacum HOM05D007286 ORTHO05D008955 2.4e-21 107.8 265 34.7
ClCG05G022150 Citrullus lanatus HOM05D007286 ORTHO05D008955 9.2e-21 105.9 258 33.3
Cfa010442 Carpinus fangiana HOM05D007286 ORTHO05D008955 1.6e-20 105.1 566 27.2
MELO3C012308.2 Cucumis melo HOM05D007286 ORTHO05D008955 2.1e-20 104.8 258 32.2
HPP92_018000 Vanilla planifolia HOM05D007286 ORTHO05D008955 2.7e-20 104.4 263 33.5
Cc07_g21350 Coffea canephora HOM05D007286 ORTHO05D008955 3.5e-20 104.0 267 34.1
Sed0010854 Sechium edule HOM05D007286 ORTHO05D008955 6.0e-20 103.2 258 32.2
Hund06829 Selenicereus undatus HOM05D007286 ORTHO05D008955 6.0e-20 103.2 255 32.2
Haze_03401 Corylus avellana HOM05D007286 ORTHO05D008955 2.5e-18 97.8 89 59.6
CsaV3_5G034980 Cucumis sativus L. HOM05D007286 ORTHO05D008955 9.5e-18 95.9 107 51.4
SalBow8G2801 Salvia bowleyana HOM05D007286 ORTHO05D008955 9.5e-18 95.9 95 55.8
AUR62034104 Chenopodium quinoa HOM05D007286 ORTHO05D008955 2.8e-17 94.4 260 33.1
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 8.1e-17 92.8 257 33.5
SEGI_40207 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 3.1e-16 90.9 286 26.9
AUR62041274 Chenopodium quinoa HOM05D007286 ORTHO05D008955 1.2e-15 89.0 259 31.7
Glyma.15G221551 Glycine max HOM05D007286 ORTHO05D008955 2.0e-15 88.2 203 33.0
SGA_v2.0_scaffold143G35713 Striga asiatica HOM05D007286 ORTHO05D008955 4.4e-15 87.0 530 27.0
Migut.B01162 Erythranthe guttata HOM05D007286 ORTHO05D008955 5.8e-15 86.7 544 27.0
Aqoxy386s002 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 2.9e-14 84.3 206 33.5
unitig_22.g5338 Utricularia gibba HOM05D007286 ORTHO05D008955 8.4e-14 82.8 253 30.0
arahy.Tifrunner.gnm1.ann1.VD1ICN Arachis hypogaea HOM05D007286 ORTHO05D008955 3.2e-13 80.9 627 25.2
PSO384G4662 Papaver somniferum HOM05D007286 ORTHO05D008955 3.2e-13 80.9 202 32.7
vmacro13790 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 9.2e-13 79.3 215 34.0
vmacro23446 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 9.2e-13 79.3 215 34.0
SEGI_11479 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 7.8e-12 76.3 291 26.5
ATR0751G048 Amborella trichopoda HOM05D005518 ORTHO05D001269 1.5e-10 72.0 280 28.2
Os06g0609800 Oryza sativa ssp. japonica HOM05D005518 ORTHO05D001269 1.5e-10 72.0 261 27.2
TAR626G1948 Trochodendron aralioides HOM05D005518 ORTHO05D001269 3.3e-10 70.9 279 26.5
MBI14_g12740_MAGBIO Magnolia biondii HOM05D005518 ORTHO05D001269 2.1e-09 68.2 273 27.5
HPP92_026687 Vanilla planifolia HOM05D007286 ORTHO05D008955 2.1e-09 68.2 215 31.6
Zm00001eb388520 Zea mays HOM05D005518 ORTHO05D001269 2.1e-09 68.2 260 26.9
THA.LOC104803143 Tarenaya hassleriana HOM05D005518 ORTHO05D001269 2.8e-09 67.8 258 27.5
Thecc.03G124400 Theobroma cacao HOM05D005518 ORTHO05D001269 4.8e-09 67.0 264 28.0
arahy.Tifrunner.gnm1.ann1.QFFJ7D Arachis hypogaea HOM05D005518 ORTHO05D001269 6.2e-09 66.6 263 26.6
PSO063G3591 Papaver somniferum HOM05D005518 ORTHO05D001269 6.2e-09 66.6 267 26.2
Psat5g139920 Pisum sativum HOM05D005518 ORTHO05D001269 6.2e-09 66.6 272 29.0
Phvul.009G168300 Phaseolus vulgaris HOM05D005518 ORTHO05D001269 1.1e-08 65.9 270 27.0
Ciclev10019441m.g Citrus clementina HOM05D005518 ORTHO05D001269 1.4e-08 65.5 263 26.6
Hma1.2p1_0717F.1_g208260 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 1.8e-08 65.1 146 32.9
VMungo1309G2768 Vigna mungo HOM05D005518 ORTHO05D001269 1.8e-08 65.1 268 28.0
Lj1g0006481 Lotus japonicus HOM05D005518 ORTHO05D001269 3.1e-08 64.3 262 26.7
Lalb_Chr08g0237001 Lupinus albus HOM05D005518 ORTHO05D001269 4.0e-08 63.9 259 25.9
PSO782G5170 Papaver somniferum HOM05D005518 ORTHO05D001269 4.0e-08 63.9 277 26.4
CiPaw.11G011000 Carya illinoinensis HOM05D005518 ORTHO05D001269 5.3e-08 63.5 276 24.6
Sabra12G0068800 Salix brachista HOM05D005518 ORTHO05D001269 5.3e-08 63.5 263 25.5
FvH4_5g07650 Fragaria vesca HOM05D005518 ORTHO05D001269 6.9e-08 63.2 261 26.8
Potri.015G091500 Populus trichocarpa HOM05D005518 ORTHO05D001269 6.9e-08 63.2 260 26.2
PGR044G0025 Punica granatum HOM05D005518 ORTHO05D001269 6.9e-08 63.2 263 27.8
Dinv11102 Davidia involucrata HOM05D005518 ORTHO05D001269 1.2e-07 62.4 257 26.8
Glyma.06G172500 Glycine max HOM05D005518 ORTHO05D001269 1.2e-07 62.4 261 27.2
FAN13G1318 Fragaria x ananassa HOM05D005518 ORTHO05D001269 1.5e-07 62.0 262 26.7
CiPaw.12G036400 Carya illinoinensis HOM05D005518 ORTHO05D001269 3.4e-07 60.8 271 26.6
FAN04G1413 Fragaria x ananassa HOM05D005518 ORTHO05D001269 3.4e-07 60.8 268 27.6
GSVIVG01003640001 Vitis vinifera HOM05D005518 ORTHO05D001269 4.4e-07 60.5 277 26.7
CANSAT80G2082 Cannabis sativa HOM05D005518 ORTHO05D001269 5.8e-07 60.1 280 26.1
FAN08G0706 Fragaria x ananassa HOM05D005518 ORTHO05D001269 5.8e-07 60.1 262 26.3
Hma1.2p1_0892F.1_g233190 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 5.8e-07 60.1 50 66.0
Nn1g07622 Nelumbo nucifera HOM05D005518 ORTHO05D001269 5.8e-07 60.1 267 28.5
Aa31LG3G5820 Aethionema arabicum HOM05D005518 ORTHO05D001269 9.9e-07 59.3 260 28.1
Cpa.g.sc4.97 Carica papaya HOM05D005518 ORTHO05D001269 9.9e-07 59.3 267 26.2
Potri.012G094200 Populus trichocarpa HOM05D005518 ORTHO05D001269 9.9e-07 59.3 260 25.4
THA.LOC104825006 Tarenaya hassleriana HOM05D005518 ORTHO05D001269 9.9e-07 59.3 89 40.4
Cc04_g10180 Coffea canephora HOM05D005518 ORTHO05D001269 2.2e-06 58.2 265 27.5
RcHm_v2.0_Chr7g0190821 Rosa chinensis HOM05D005518 ORTHO05D001269 2.2e-06 58.2 270 25.6
RcHm_v2.0_Chr1g0380401 Rosa chinensis HOM05D005518 ORTHO05D001269 2.9e-06 57.8 263 25.1
Prupe.5G155700 Prunus persica HOM05D005518 ORTHO05D001269 3.8e-06 57.4 262 24.8
Gorai.006G270900 Gossypium raimondii HOM05D005518 ORTHO05D001269 4.9e-06 57.0 271 25.5
Peaxi162Scf00089g00324 Petunia axillaris HOM05D005518 ORTHO05D001269 4.9e-06 57.0 268 26.1
Aqoxy4G02270 Aquilegia oxysepala HOM05D005518 ORTHO05D001269 6.4e-06 56.6 266 23.7
CSS0040133 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 6.4e-06 56.6 263 25.5
Duzib205G1346 Durio zibethinus HOM05D005518 ORTHO05D001269 6.4e-06 56.6 264 25.4
arahy.Tifrunner.gnm1.ann1.P5I184 Arachis hypogaea HOM05D001134 ORTHO05D001269 8.4e-06 56.2 259 25.1
Lalb_Chr11g0069691 Lupinus albus HOM05D005518 ORTHO05D001269 8.4e-06 56.2 261 24.9


User provided reference genes

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