Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 0.0e+00 1126.3 605 100.0
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 0.0e+00 1115.5 605 99.2
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 1.1e-286 989.6 612 87.1
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 5.8e-240 834.3 609 74.1
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 1.8e-233 812.8 611 72.5
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 1.7e-231 806.2 612 73.0
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 1.9e-230 802.7 612 71.2
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 7.9e-229 797.3 608 71.4
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 2.3e-228 795.8 608 71.4
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 5.1e-228 794.7 612 71.2
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 6.9e-225 784.3 608 71.2
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 1.2e-224 783.5 604 71.2
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 2.0e-224 782.7 609 68.6
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 2.6e-224 782.3 611 70.0
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 5.9e-224 781.2 609 70.6
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 7.6e-224 780.8 602 69.3
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 1.3e-223 780.0 610 70.5
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 1.7e-223 779.6 611 70.5
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 1.7e-223 779.6 612 70.8
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 2.9e-223 778.9 611 69.6
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 6.5e-223 777.7 609 70.4
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 2.5e-222 775.8 608 68.9
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 9.3e-222 773.9 610 69.5
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 2.1e-221 772.7 612 68.1
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 3.6e-221 771.9 611 68.7
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 3.6e-221 771.9 610 69.2
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 1.8e-220 769.6 611 68.9
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 7.4e-219 764.2 615 67.0
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 2.8e-218 762.3 609 67.8
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 4.8e-218 761.5 619 64.6
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 6.3e-218 761.1 622 66.7
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.4e-217 760.0 619 64.5
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 1.4e-217 760.0 611 68.4
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 3.1e-217 758.8 612 67.3
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 6.9e-217 757.7 612 67.6
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.2e-216 756.9 616 67.0
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 1.2e-216 756.9 616 68.2
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 2.0e-216 756.1 611 68.6
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 2.0e-216 756.1 611 66.8
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 2.6e-216 755.7 609 68.0
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 4.5e-216 755.0 612 68.1
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 5.9e-216 754.6 611 67.1
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 5.9e-216 754.6 611 67.1
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 1.0e-215 753.8 613 67.9
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 1.0e-215 753.8 609 67.5
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 1.0e-215 753.8 611 67.8
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 1.3e-215 753.4 609 67.2
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 1.3e-215 753.4 609 68.5
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.7e-215 753.1 617 66.6
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.7e-215 753.1 610 68.5
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.7e-215 753.1 610 68.5
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 2.2e-215 752.7 614 68.2
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 2.9e-215 752.3 611 68.6
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.9e-215 752.3 617 66.5
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 2.9e-215 752.3 609 68.0
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 5.0e-215 751.5 615 67.5
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 5.0e-215 751.5 615 66.0
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 1.1e-214 750.4 615 65.9
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 1.9e-214 749.6 615 66.0
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 3.2e-214 748.8 611 67.4
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 4.2e-214 748.4 612 66.0
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 5.5e-214 748.0 609 66.2
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.2e-213 746.9 614 65.8
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 2.1e-213 746.1 605 67.3
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.7e-213 745.7 612 66.8
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 2.7e-213 745.7 610 67.5
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 3.6e-213 745.3 616 66.7
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 3.6e-213 745.3 611 67.9
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 3.6e-213 745.3 611 67.9
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 3.6e-213 745.3 611 67.9
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 4.6e-213 745.0 620 66.5
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 6.1e-213 744.6 612 67.0
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 7.9e-213 744.2 609 66.3
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 1.8e-212 743.0 609 65.7
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 2.3e-212 742.7 609 65.5
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 5.1e-212 741.5 607 65.1
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 6.7e-212 741.1 610 67.5
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 8.8e-212 740.7 607 65.7
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 2.0e-211 739.6 609 65.8
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 7.4e-211 737.6 609 65.5
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 1.3e-210 736.9 608 66.0
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 2.2e-210 736.1 618 64.7
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 2.2e-210 736.1 609 65.0
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 1.1e-209 733.8 609 65.0
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 2.4e-209 732.6 612 64.7
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 4.1e-209 731.9 611 65.3
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 6.9e-209 731.1 609 67.2
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.2e-208 730.3 612 63.2
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 2.0e-208 729.6 608 65.0
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 3.4e-208 728.8 607 65.1
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.3e-207 726.9 611 65.5
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 4.2e-206 721.8 610 65.4
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 1.2e-205 720.3 606 64.5
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 7.9e-205 717.6 610 64.3
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 1.0e-204 717.2 619 64.6
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 1.1e-203 713.8 610 66.1
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 5.7e-203 711.4 622 64.3
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 2.8e-202 709.1 610 65.6
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 3.1e-201 705.7 615 63.7
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 5.3e-201 704.9 606 64.2
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 2.9e-199 699.1 612 64.1
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 4.2e-198 695.3 607 63.9
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 4.0e-196 688.7 610 63.3
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 4.0e-196 688.7 612 63.9
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 2.0e-195 686.4 607 64.3
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 2.0e-195 686.4 607 63.9
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 2.6e-195 686.0 607 64.4
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 3.7e-194 682.2 610 61.5
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 8.2e-194 681.0 610 62.8
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 1.4e-193 680.2 651 60.7
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 5.9e-192 674.9 562 66.2
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 1.7e-191 673.3 561 63.8
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 8.8e-188 661.0 615 61.1
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 1.1e-185 654.1 613 61.0
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 5.4e-185 651.7 604 61.4
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 8.0e-181 637.9 881 45.5
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.0e-180 636.0 612 59.5
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.9e-174 616.7 483 68.5
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 2.3e-172 609.8 611 58.3
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.4e-169 600.5 581 57.8
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 2.1e-152 543.5 466 67.2
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.0e-151 541.2 605 52.4
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 9.5e-150 534.6 610 50.7
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 5.2e-140 502.3 611 49.4
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 1.9e-137 493.8 609 50.2
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 7.6e-131 471.9 531 54.8
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 3.2e-129 466.5 623 44.5
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 4.0e-116 422.9 593 44.4
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 4.1e-108 396.4 612 44.4
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 1.8e-79 301.2 216 69.4
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 1.7e-77 294.7 327 51.1
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 8.2e-77 292.4 247 61.1
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 2.8e-69 267.3 599 35.6
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.4e-60 238.4 219 58.9
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 9.5e-57 225.7 607 31.8
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 5.2e-55 219.9 242 60.3
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 4.3e-49 200.3 151 66.2
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 2.8e-40 171.0 156 60.9
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 2.0e-38 164.9 98 80.6
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 3.3e-25 120.9 79 70.9
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.1e-24 118.2 208 38.9
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 2.8e-24 117.9 79 69.6
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 2.9e-21 107.8 606 26.1
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 2.4e-20 104.8 70 68.6
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 1.2e-19 102.4 91 67.0
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 5.6e-17 93.6 114 44.7
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 4.2e-12 77.4 59 66.1
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 6.0e-11 73.6 214 34.6
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 4.8e-08 63.9 100 40.0


User provided reference genes

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