Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0127800 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 1.0e-132 476.9 262 100.0
Os12g0124000 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 1.8e-81 306.6 237 74.3
Zm00001eb163720 Zea mays HOM05D007263 ORTHO05D009187 3.7e-50 202.6 229 56.3
MBI19_g09308_MAGBIO Magnolia biondii HOM05D007263 ORTHO05D009187 4.6e-40 169.1 149 61.7
Thecc.09G263800 Theobroma cacao HOM05D007263 ORTHO05D009187 2.3e-39 166.8 145 58.6
Manes.09G111800 Manihot esculenta HOM05D007263 ORTHO05D009187 3.9e-39 166.0 138 60.9
GSVIVG01037444001 Vitis vinifera HOM05D000101 ORTHO05D000089 6.6e-39 165.2 145 55.9
Gohir.D05G078200 Gossypium hirsutum HOM05D007263 ORTHO05D009187 8.6e-39 164.9 151 56.3
Gorai.009G079700 Gossypium raimondii HOM05D007263 ORTHO05D009187 8.6e-39 164.9 151 56.3
COL.COLO4_25292 Corchorus olitorius HOM05D007263 ORTHO05D009187 1.9e-38 163.7 199 48.7
VMungo0540G1942 Vigna mungo HOM05D007263 ORTHO05D009187 1.9e-38 163.7 140 60.0
Gohir.A05G075400 Gossypium hirsutum HOM05D007263 ORTHO05D009187 4.3e-38 162.5 154 54.5
Actinidia06355 Actinidia chinensis HOM05D007263 ORTHO05D009187 9.5e-38 161.4 169 53.8
CiPaw.13G127300 Carya illinoinensis HOM05D007263 ORTHO05D009187 9.5e-38 161.4 140 60.0
AUR62020179 Chenopodium quinoa HOM05D007263 ORTHO05D009187 9.5e-38 161.4 136 54.4
Lj6g0015831 Lotus japonicus HOM05D007263 ORTHO05D009187 1.2e-37 161.0 145 57.9
AUR62001600 Chenopodium quinoa HOM05D007263 ORTHO05D009187 1.6e-37 160.6 136 53.7
Glyma.20G058100 Glycine max HOM05D007263 ORTHO05D009187 2.8e-37 159.8 156 56.4
Rhsim01G0197200 Rhododendron simsii HOM05D007263 ORTHO05D009187 2.8e-37 159.8 145 56.6
CDE07G0519 Ceratophyllum demersum HOM05D007263 ORTHO05D009187 6.2e-37 158.7 187 51.3
Phvul.L004437 Phaseolus vulgaris HOM05D007263 ORTHO05D009187 8.0e-37 158.3 185 49.2
PGR119G0910 Punica granatum HOM05D007263 ORTHO05D009187 8.0e-37 158.3 158 53.2
TWI79G1263 Tripterygium wilfordii HOM05D007263 ORTHO05D009187 8.0e-37 158.3 169 50.3
TAR623G1137 Trochodendron aralioides HOM05D007263 ORTHO05D009187 8.0e-37 158.3 149 55.7
Nn6g32384 Nelumbo nucifera HOM05D007263 ORTHO05D009187 1.8e-36 157.1 197 46.7
DCAR_028386 Daucus carota HOM05D007263 ORTHO05D009187 2.3e-36 156.8 165 51.5
Hma1.2p1_0994F.1_g245580 Hydrangea macrophylla HOM05D007263 ORTHO05D009187 2.3e-36 156.8 142 56.3
HanXRQChr03g0085111 Helianthus annuus HOM05D007263 ORTHO05D009187 3.1e-36 156.4 158 53.2
CSS0014161 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 6.8e-36 155.2 205 45.9
Duzib168G0238 Durio zibethinus HOM05D007263 ORTHO05D009187 6.8e-36 155.2 167 52.1
SalBow3G2238 Salvia bowleyana HOM05D007263 ORTHO05D009187 8.9e-36 154.8 230 42.2
Cfa010246 Carpinus fangiana HOM05D007263 ORTHO05D009187 1.2e-35 154.5 140 55.7
FvH4_3g27180 Fragaria vesca HOM05D007263 ORTHO05D009187 1.2e-35 154.5 145 54.5
FAN16G1710 Fragaria x ananassa HOM05D007263 ORTHO05D009187 1.2e-35 154.5 146 54.1
Hund18825 Selenicereus undatus HOM05D007263 ORTHO05D009187 1.5e-35 154.1 214 43.5
Eucgr.J00617 Eucalyptus grandis HOM05D007263 ORTHO05D009187 2.0e-35 153.7 236 40.7
PSO384G0367 Papaver somniferum HOM05D007263 ORTHO05D009187 2.6e-35 153.3 143 57.3
Dinv32124 Davidia involucrata HOM05D007263 ORTHO05D009187 4.4e-35 152.5 220 43.6
EL10Ac7g16235 Beta vulgaris HOM05D007263 ORTHO05D009187 1.3e-34 151.0 184 45.7
MD11G1181300 Malus domestica HOM05D007263 ORTHO05D009187 1.3e-34 151.0 143 53.1
CANSAT54G3001 Cannabis sativa HOM05D007263 ORTHO05D009187 1.7e-34 150.6 195 45.1
Prupe.6G154100 Prunus persica HOM05D007263 ORTHO05D009187 1.7e-34 150.6 142 52.8
RcHm_v2.0_Chr5g0049851 Rosa chinensis HOM05D007263 ORTHO05D009187 1.7e-34 150.6 156 51.9
Lsat_1_v5_gn_6_85860 Lactuca sativa HOM05D007263 ORTHO05D009187 2.2e-34 150.2 127 60.6
PSO339G3146 Papaver somniferum HOM05D007263 ORTHO05D009187 2.2e-34 150.2 143 56.6
Sc06g0006180 Simmondsia chinensis HOM05D007263 ORTHO05D009187 2.9e-34 149.8 191 46.1
Medtr3g079520 Medicago truncatula HOM05D007263 ORTHO05D009187 3.7e-34 149.4 146 52.1
Medtr3g479600 Medicago truncatula HOM05D007263 ORTHO05D009187 3.7e-34 149.4 146 52.1
unitig_8.g2984 Utricularia gibba HOM05D007263 ORTHO05D009187 3.7e-34 149.4 126 54.0
Cc01_g07450 Coffea canephora HOM05D007263 ORTHO05D009187 4.9e-34 149.1 183 47.0
vmacro23061 Vaccinium macrocarpon HOM05D007263 ORTHO05D009187 6.4e-34 148.7 132 59.1
Atru.chr3.2913 Acer truncatum HOM05D007263 ORTHO05D009187 1.9e-33 147.1 145 51.7
FAN11G0122 Fragaria x ananassa HOM05D007263 ORTHO05D009187 1.9e-33 147.1 151 52.3
ATR0068G111 Amborella trichopoda HOM05D007263 ORTHO05D009187 2.4e-33 146.7 171 49.1
MSTRG.17655 Avicennia marina HOM05D007263 ORTHO05D009187 2.4e-33 146.7 143 55.2
Ca_16255_v3 Cicer arietinum L. HOM05D007263 ORTHO05D009187 4.1e-33 146.0 140 53.6
THA.LOC104816966 Tarenaya hassleriana HOM05D007263 ORTHO05D009187 4.1e-33 146.0 155 47.7
Aa31LG7G14990 Aethionema arabicum HOM05D007263 ORTHO05D009187 5.4e-33 145.6 120 58.3
Pp3c1_27160 Physcomitrium patens HOM05D007263 ORTHO05D009187 7.1e-33 145.2 140 55.0
Oeu032066.1 Olea europaea HOM05D007263 ORTHO05D009187 6.0e-32 142.1 180 48.9
Psat5g112360 Pisum sativum HOM05D007263 ORTHO05D009187 1.3e-31 141.0 131 57.3
Thhalv10000320m.g Eutrema salsugineum HOM05D007263 ORTHO05D009187 2.3e-31 140.2 133 53.4
Pp3c2_15500 Physcomitrium patens HOM05D007263 ORTHO05D009187 3.0e-31 139.8 114 58.8
Carub.0004s0057 Capsella rubella HOM05D007263 ORTHO05D009187 3.9e-31 139.4 143 49.7
Ciclev10016536m.g Citrus clementina HOM05D007263 ORTHO05D009187 3.9e-31 139.4 229 41.9
Sed0004996 Sechium edule HOM05D007263 ORTHO05D009187 3.9e-31 139.4 127 54.3
SMO271G0152 Selaginella moellendorffii HOM05D007263 ORTHO05D009187 3.9e-31 139.4 143 52.4
ECA240G3643 Erigeron canadensis HOM05D000684 ORTHO05D000688 5.1e-31 139.0 161 49.7
AT2G21530 Arabidopsis thaliana HOM05D007263 ORTHO05D009187 6.6e-31 138.7 122 54.1
BcaC07g41154 Brassica carinata HOM05D007263 ORTHO05D009187 6.6e-31 138.7 120 54.2
BolC8t51703H Brassica oleracea HOM05D007263 ORTHO05D009187 6.6e-31 138.7 120 54.2
Sp4g00690 Schrenkiella parvula HOM05D007263 ORTHO05D009187 6.6e-31 138.7 150 48.0
Sabra09G0122700 Salix brachista HOM05D007263 ORTHO05D009187 8.6e-31 138.3 143 51.0
SGA_v2.0_scaffold16G07576 Striga asiatica HOM05D007263 ORTHO05D009187 8.6e-31 138.3 149 49.7
SGA_v2.0_scaffold3G01630 Striga asiatica HOM05D007263 ORTHO05D009187 8.6e-31 138.3 149 49.7
FAN25G1860 Fragaria x ananassa HOM05D007263 ORTHO05D009187 1.1e-30 137.9 158 47.5
AL4G10720 Arabidopsis lyrata HOM05D007263 ORTHO05D009187 1.9e-30 137.1 151 46.4
ClCG02G024290 Citrullus lanatus HOM05D007263 ORTHO05D009187 3.3e-30 136.3 129 51.2
Lalb_Chr14g0363361 Lupinus albus HOM05D007263 ORTHO05D009187 3.3e-30 136.3 133 53.4
CARHR112460 Cardamine hirsuta HOM05D007263 ORTHO05D009187 4.3e-30 136.0 164 47.0
Migut.N02412 Erythranthe guttata HOM05D007263 ORTHO05D009187 4.3e-30 136.0 128 55.5
A09p58160 Brassica napus HOM05D007263 ORTHO05D009187 9.5e-30 134.8 141 48.9
BraA09t41205Z Brassica rapa HOM05D007263 ORTHO05D009187 9.5e-30 134.8 141 48.9
QL01p020523 Quercus lobata HOM05D007263 ORTHO05D009187 1.2e-29 134.4 199 43.2
CSS0024406 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 1.6e-29 134.0 198 42.4
Mapoly0061s0077 Marchantia polymorpha HOM05D007263 ORTHO05D009187 3.6e-29 132.9 142 51.4
SGA_v2.0_scaffold29G12128 Striga asiatica HOM05D000563 ORTHO05D000536 1.1e-28 131.3 121 55.4
Potri.009G156700 Populus trichocarpa HOM05D007263 ORTHO05D009187 2.9e-26 123.2 164 42.7
Solyc01g009080.4 Solanum lycopersicum HOM05D007263 ORTHO05D009187 4.9e-26 122.5 136 50.7
Sopen01g004570 Solanum pennellii HOM05D007263 ORTHO05D009187 8.3e-26 121.7 136 50.7
TPR.G9589 Trifolium pratense HOM05D007263 ORTHO05D009187 1.4e-25 120.9 155 46.5
PGSC0003DMG400022700 Solanum tuberosum HOM05D007263 ORTHO05D009187 1.6e-24 117.5 178 42.7
CAN.G651.2 Capsicum annuum HOM05D007263 ORTHO05D009187 2.7e-24 116.7 187 41.2
MELO3C014714.2 Cucumis melo HOM05D007263 ORTHO05D009187 3.5e-24 116.3 120 48.3
Potri.009G156900 Populus trichocarpa HOM05D007263 ORTHO05D009187 1.7e-23 114.0 121 47.1
Haze_23636 Corylus avellana HOM05D007263 ORTHO05D009187 1.1e-22 111.3 193 39.4
arahy.Tifrunner.gnm1.ann1.TU72Q6 Arachis hypogaea HOM05D007263 ORTHO05D009187 7.3e-22 108.6 164 41.5
arahy.Tifrunner.gnm1.ann1.S2FUN4 Arachis hypogaea HOM05D007263 ORTHO05D009187 1.2e-21 107.8 189 38.6
CsaV3_4G017420 Cucumis sativus L. HOM05D007263 ORTHO05D009187 3.1e-20 103.2 154 40.9
SEGI_12571 Sequoiadendron giganteum HOM05D007263 ORTHO05D009187 3.8e-18 96.3 72 62.5
Peaxi162Scf00342g00119 Petunia axillaris HOM05D007263 ORTHO05D009187 6.4e-18 95.5 94 54.3
Nitab4.5_0000428g0130 Nicotiana tabacum HOM05D007263 ORTHO05D009187 8.4e-18 95.1 90 55.6
Cpa.g.sc103.87 Carica papaya HOM05D007263 ORTHO05D009187 7.8e-16 88.6 235 31.5
SGA_v2.0_scaffold8G04511 Striga asiatica HOM05D000563 ORTHO05D000536 6.6e-15 85.5 83 56.6
MCO16G316 Micromonas commoda HOM05D007263 ORTHO05D009187 5.6e-14 82.4 112 38.4
Nitab4.5_0002300g0100 Nicotiana tabacum HOM05D007263 ORTHO05D009187 7.3e-14 82.0 157 40.1
Cpa.g.c47634 Carica papaya HOM05D007263 ORTHO05D009187 3.6e-13 79.7 114 40.4
PRCOL_00003243 Prasinoderma coloniale HOM05D007263 ORTHO05D009187 7.6e-11 72.0 108 37.0
Cre12.g534450 Chlamydomonas reinhardtii HOM05D007263 ORTHO05D009187 4.9e-10 69.3 127 37.8
PGR004G0880 Punica granatum HOM05D002878 ORTHO05D003649 4.2e-09 66.2 139 32.4
Solyc02g090890.4 Solanum lycopersicum HOM05D002878 ORTHO05D003649 4.6e-08 62.8 149 32.2
Nitab4.5_0002016g0120 Nicotiana tabacum HOM05D002878 ORTHO05D003649 1.0e-07 61.6 146 30.8
Sabra04G0132300 Salix brachista HOM05D000052 ORTHO05D001127 1.0e-07 61.6 56 51.8
PGSC0003DMG400004020 Solanum tuberosum HOM05D002878 ORTHO05D003649 1.0e-07 61.6 146 31.5
COL.COLO4_11419 Corchorus olitorius HOM05D002878 ORTHO05D003649 1.3e-07 61.2 125 36.0
Sopen02g035540 Solanum pennellii HOM05D002878 ORTHO05D003649 1.3e-07 61.2 146 32.2
Sed0023782 Sechium edule HOM05D002878 ORTHO05D003649 3.9e-07 59.7 143 30.1
CANSAT01G1312 Cannabis sativa HOM05D002878 ORTHO05D003649 6.6e-07 58.9 153 30.1
Nitab4.5_0002440g0040 Nicotiana tabacum HOM05D002878 ORTHO05D003649 6.6e-07 58.9 142 30.3
Sed0027368 Sechium edule HOM05D002878 ORTHO05D003649 8.7e-07 58.5 146 30.1
HanXRQChr12g0378831 Helianthus annuus HOM05D002878 ORTHO05D003649 1.1e-06 58.2 131 32.8
Peaxi162Scf00450g00316 Petunia axillaris HOM05D002878 ORTHO05D003649 1.5e-06 57.8 127 32.3
Lsat_1_v5_gn_3_90761 Lactuca sativa HOM05D002878 ORTHO05D003649 4.3e-06 56.2 131 32.1


User provided reference genes

Program Settings