Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.4e-173 612.8 313 100.0
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 3.8e-166 588.2 313 95.2
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 2.4e-120 436.0 318 73.0
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 3.4e-119 432.2 321 72.0
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 1.8e-75 287.0 314 50.0
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 4.6e-71 272.3 316 47.8
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 4.6e-71 272.3 311 46.6
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.3e-70 270.8 304 46.7
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 1.7e-70 270.4 314 49.0
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 1.7e-70 270.4 321 48.0
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 3.9e-70 269.2 304 47.4
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.5e-69 267.3 316 46.8
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 2.5e-69 266.5 324 48.1
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 4.3e-69 265.8 324 48.5
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 1.2e-68 264.2 317 47.6
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 2.1e-68 263.5 316 46.8
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.1e-67 261.2 304 48.0
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.1e-67 261.2 318 46.2
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 5.2e-67 258.8 321 44.9
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 8.9e-67 258.1 317 47.0
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 2.0e-66 256.9 316 44.6
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 2.0e-66 256.9 316 44.9
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 4.4e-66 255.8 314 44.6
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 5.8e-66 255.4 314 47.8
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 9.9e-66 254.6 300 45.7
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.3e-65 254.2 329 43.2
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 1.3e-65 254.2 316 44.0
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.7e-65 253.8 320 43.8
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 2.2e-65 253.4 306 46.4
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 2.2e-65 253.4 300 47.7
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 2.2e-65 253.4 322 45.3
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 2.9e-65 253.1 319 46.4
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 4.9e-65 252.3 318 45.9
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 6.4e-65 251.9 312 45.5
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 6.4e-65 251.9 323 46.7
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 2.4e-64 250.0 326 43.9
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 4.1e-64 249.2 301 45.5
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 4.1e-64 249.2 315 45.4
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 4.1e-64 249.2 318 46.2
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 7.1e-64 248.4 311 46.0
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.2e-64 248.1 293 43.7
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 2.1e-63 246.9 315 44.8
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 1.0e-62 244.6 317 45.1
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 1.0e-62 244.6 312 45.8
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 1.3e-62 244.2 318 45.3
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 1.7e-62 243.8 317 45.4
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.7e-62 243.8 319 44.5
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 3.0e-62 243.0 317 44.5
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 2.5e-61 240.0 320 43.4
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 3.3e-61 239.6 320 45.9
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 3.3e-61 239.6 316 44.0
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 3.3e-61 239.6 280 45.4
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 4.3e-61 239.2 320 41.6
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 4.3e-61 239.2 313 45.7
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 9.5e-61 238.0 294 44.9
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 1.2e-60 237.7 316 43.7
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 3.6e-60 236.1 322 44.1
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.6e-60 236.1 329 40.7
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 1.4e-59 234.2 307 42.7
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 2.4e-59 233.4 307 43.6
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 3.1e-59 233.0 300 43.3
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 5.2e-59 232.3 320 41.2
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 5.2e-59 232.3 310 43.5
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 1.5e-58 230.7 319 42.9
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 3.4e-58 229.6 307 43.0
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 3.4e-58 229.6 323 42.1
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 3.4e-58 229.6 308 43.8
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 4.4e-58 229.2 317 43.2
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 4.4e-58 229.2 312 42.3
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 4.4e-58 229.2 314 43.6
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 5.8e-58 228.8 330 41.5
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 7.6e-58 228.4 314 41.4
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 7.6e-58 228.4 318 43.4
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 7.6e-58 228.4 316 42.1
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 9.9e-58 228.0 304 41.8
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 2.2e-57 226.9 314 42.0
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 2.9e-57 226.5 329 42.6
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 2.9e-57 226.5 323 42.7
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 3.8e-57 226.1 320 42.5
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 3.8e-57 226.1 281 44.1
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 3.8e-57 226.1 320 40.6
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 3.8e-57 226.1 320 43.8
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 4.9e-57 225.7 317 42.0
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 4.9e-57 225.7 312 42.6
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 4.9e-57 225.7 312 42.6
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 4.9e-57 225.7 315 42.2
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 6.4e-57 225.3 265 46.0
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 8.4e-57 224.9 319 42.0
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 8.4e-57 224.9 326 41.7
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 1.1e-56 224.6 301 42.2
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 2.4e-56 223.4 304 41.8
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 2.4e-56 223.4 316 39.9
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 3.2e-56 223.0 307 41.7
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 3.2e-56 223.0 307 41.7
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 4.2e-56 222.6 316 41.8
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 4.2e-56 222.6 316 41.8
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 4.2e-56 222.6 316 41.8
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 5.4e-56 222.2 299 41.8
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 9.2e-56 221.5 307 42.0
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 9.2e-56 221.5 318 42.1
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 1.2e-55 221.1 312 42.3
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 1.6e-55 220.7 312 41.7
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 1.6e-55 220.7 295 44.7
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 2.7e-55 219.9 364 39.6
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 2.7e-55 219.9 339 42.2
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 2.7e-55 219.9 320 43.1
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 3.5e-55 219.5 316 41.5
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 4.6e-55 219.2 316 40.8
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 7.8e-55 218.4 320 41.9
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 1.7e-54 217.2 308 42.2
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 3.0e-54 216.5 316 41.5
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 3.0e-54 216.5 316 41.5
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 3.0e-54 216.5 295 43.4
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 3.9e-54 216.1 321 39.3
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 5.1e-54 215.7 297 41.4
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 6.6e-54 215.3 314 40.1
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 8.7e-54 214.9 260 45.8
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 1.1e-53 214.5 317 40.7
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 2.5e-53 213.4 258 45.7
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 3.3e-53 213.0 317 40.7
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 3.3e-53 213.0 317 40.7
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 3.3e-53 213.0 317 40.7
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 1.2e-52 211.1 258 45.3
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 1.1e-51 208.0 285 43.2
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 1.8e-51 207.2 282 42.6
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 2.4e-51 206.8 314 38.9
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 4.0e-51 206.1 316 39.6
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 1.5e-50 204.1 319 40.4
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 3.8e-49 199.5 323 37.5
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 1.3e-46 191.0 413 34.4
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 3.3e-45 186.4 323 36.8
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.1e-44 183.7 257 42.4
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 1.5e-42 177.6 391 33.8
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 7.1e-40 168.7 229 43.2
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 3.0e-38 163.3 317 37.2
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 2.5e-32 143.7 253 33.2
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 6.0e-31 139.0 224 36.6
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.3e-28 131.3 213 38.0
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 8.2e-28 128.6 164 40.9
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.4e-27 127.9 164 44.5
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 1.8e-27 127.5 310 28.4
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 2.0e-26 124.0 76 76.3
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 2.6e-26 123.6 75 77.3
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 2.6e-26 123.6 75 77.3
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 1.3e-25 121.3 170 40.6
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 3.8e-25 119.8 104 61.5
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 1.4e-24 117.9 75 73.3
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 4.2e-24 116.3 326 30.1
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 7.9e-23 112.1 326 25.8
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 1.8e-22 110.9 315 28.9
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.3e-22 110.5 113 47.8
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 6.7e-22 109.0 113 46.9
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 8.2e-20 102.1 177 37.9
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.3e-14 84.0 115 42.6
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 3.7e-12 76.6 105 42.9
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.5e-10 71.2 88 44.3
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 5.9e-10 69.3 125 40.0
Zm00001eb408990 Zea mays HOM05D004300 ORTHO05D005171 3.2e-08 63.5 43 69.8
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.4e-08 62.0 92 39.1
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.4e-08 62.0 92 39.1
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.4e-06 58.2 101 35.6


User provided reference genes

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