Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 2.5e-86 322.0 157 100.0
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 3.7e-53 211.8 153 66.0
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 2.2e-50 202.6 157 63.1
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 1.4e-49 199.9 156 60.9
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 1.9e-49 199.5 156 60.3
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 1.6e-48 196.4 150 62.7
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 7.9e-48 194.1 154 59.1
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 1.4e-47 193.4 152 59.9
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 1.4e-47 193.4 151 62.3
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 1.8e-47 193.0 153 62.1
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 3.9e-47 191.8 153 61.4
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 3.9e-47 191.8 153 58.2
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 6.7e-47 191.0 149 60.4
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 1.1e-46 190.3 151 59.6
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 1.1e-46 190.3 153 60.8
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 2.0e-46 189.5 151 60.3
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 2.6e-46 189.1 161 59.0
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 2.6e-46 189.1 152 59.2
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 1.3e-45 186.8 156 56.4
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 1.7e-45 186.4 153 56.2
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 2.2e-45 186.0 157 54.1
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 3.7e-45 185.3 153 56.2
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 3.7e-45 185.3 153 56.9
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 3.7e-45 185.3 164 55.5
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 3.7e-45 185.3 151 58.3
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 4.8e-45 184.9 153 55.6
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 4.8e-45 184.9 153 55.6
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 4.8e-45 184.9 153 55.6
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 4.8e-45 184.9 153 55.6
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 6.3e-45 184.5 149 57.0
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 1.1e-44 183.7 151 58.9
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 1.8e-44 183.0 152 55.9
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 3.1e-44 182.2 153 56.2
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 6.9e-44 181.0 158 58.9
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 1.2e-43 180.3 151 57.6
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.5e-43 179.9 170 52.9
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 4.5e-43 178.3 160 55.6
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 4.5e-43 178.3 175 52.0
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 1.0e-42 177.2 161 54.7
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 1.7e-42 176.4 162 53.1
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 1.7e-42 176.4 149 58.4
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 1.7e-42 176.4 182 49.5
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 3.8e-42 175.3 174 51.7
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 3.8e-42 175.3 172 52.9
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 3.8e-42 175.3 172 51.2
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 1.1e-41 173.7 158 56.3
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 1.1e-41 173.7 162 54.3
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 4.2e-41 171.8 186 48.9
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 9.4e-41 170.6 154 55.2
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 1.2e-40 170.2 167 52.1
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 1.6e-40 169.9 183 49.7
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 1.6e-40 169.9 150 57.3
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 2.1e-40 169.5 156 54.5
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 2.7e-40 169.1 151 55.6
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 3.6e-40 168.7 160 53.1
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 6.1e-40 167.9 175 50.9
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 1.8e-39 166.4 151 55.0
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 3.0e-39 165.6 153 55.6
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 3.0e-39 165.6 151 54.3
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 3.9e-39 165.2 153 53.6
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 3.9e-39 165.2 153 52.9
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 5.2e-39 164.9 174 48.9
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 5.2e-39 164.9 167 49.7
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 5.2e-39 164.9 155 51.6
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 2.0e-38 162.9 155 53.5
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 7.4e-38 161.0 165 50.9
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 9.7e-38 160.6 153 53.6
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 1.3e-37 160.2 148 52.7
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 1.3e-37 160.2 161 50.9
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.7e-37 159.8 199 41.7
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.7e-37 159.8 82 90.2
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 2.2e-37 159.5 148 55.4
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 2.8e-37 159.1 175 48.6
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 3.7e-37 158.7 150 56.0
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 3.7e-37 158.7 152 52.0
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 3.7e-37 158.7 152 52.0
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 3.7e-37 158.7 156 51.3
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 4.8e-37 158.3 159 51.6
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 4.8e-37 158.3 156 52.6
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 1.1e-36 157.1 156 51.3
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.4e-36 156.8 153 51.0
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 2.4e-36 156.0 192 45.3
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 3.1e-36 155.6 153 53.6
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 5.3e-36 154.8 165 49.1
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 5.3e-36 154.8 172 47.7
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 9.1e-36 154.1 151 53.6
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 2.6e-35 152.5 154 51.9
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 3.5e-35 152.1 121 60.3
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 4.5e-35 151.8 119 58.8
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 4.5e-35 151.8 119 61.3
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 5.9e-35 151.4 170 47.6
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 7.7e-35 151.0 156 48.7
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 7.7e-35 151.0 148 51.4
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 7.7e-35 151.0 121 62.0
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 1.0e-34 150.6 174 45.4
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 2.2e-34 149.4 151 51.7
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 2.9e-34 149.1 158 49.4
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 3.8e-34 148.7 123 57.7
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 1.5e-33 146.7 116 60.3
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 3.2e-33 145.6 112 63.4
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 5.5e-33 144.8 119 58.8
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 1.6e-32 143.3 120 60.0
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 4.7e-32 141.7 204 40.2
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 1.0e-31 140.6 148 48.6
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 1.4e-31 140.2 213 38.0
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 1.4e-31 140.2 112 60.7
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 1.8e-31 139.8 114 61.4
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 4.0e-31 138.7 117 57.3
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 5.2e-31 138.3 113 59.3
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 5.2e-31 138.3 112 60.7
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 8.8e-31 137.5 112 61.6
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 1.2e-30 137.1 112 60.7
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 1.2e-30 137.1 112 59.8
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 2.6e-30 136.0 110 59.1
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 2.6e-30 136.0 112 58.9
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 1.3e-29 133.7 129 54.3
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 1.7e-29 133.3 113 58.4
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 2.2e-29 132.9 149 47.7
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 2.8e-29 132.5 114 57.0
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 4.8e-29 131.7 150 48.7
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 4.8e-29 131.7 122 51.6
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 6.3e-29 131.3 156 44.2
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 8.2e-29 131.0 157 45.9
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 1.8e-28 129.8 121 52.1
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 1.6e-27 126.7 109 56.0
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 5.0e-26 121.7 98 62.2
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 3.2e-25 119.0 152 44.1
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 3.2e-25 119.0 120 52.5
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 2.3e-23 112.8 71 67.6
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 3.0e-23 112.5 111 50.5
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.2e-22 110.5 147 44.2
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 3.1e-20 102.4 119 47.9
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 1.2e-19 100.5 152 42.1
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 3.5e-19 99.0 103 46.6
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 3.8e-18 95.5 81 55.6
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 5.0e-18 95.1 109 40.4
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 5.0e-18 95.1 145 38.6
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 5.2e-15 85.1 72 61.1
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 5.7e-14 81.6 133 38.3
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 9.8e-14 80.9 78 56.4
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.3e-13 80.5 72 56.9
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 1.7e-13 80.1 130 38.5
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 1.7e-13 80.1 70 60.0
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.1e-12 77.4 73 56.2
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 4.1e-12 75.5 49 57.1
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 1.2e-11 73.9 47 66.0
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 4.3e-09 65.5 72 51.4
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 2.8e-08 62.8 44 59.1
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 1.8e-07 60.1 63 55.6


User provided reference genes

Program Settings