Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 5.6e-97 357.8 213 100.0
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 8.8e-66 254.2 157 82.8
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 7.4e-65 251.1 158 75.9
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 8.2e-64 247.7 158 76.6
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 1.1e-63 247.3 156 76.3
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 1.4e-63 246.9 151 78.1
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 2.4e-63 246.1 151 76.2
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 2.4e-63 246.1 156 75.0
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 4.1e-63 245.4 152 77.0
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 9.1e-63 244.2 149 75.8
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 2.0e-62 243.0 152 76.3
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 2.6e-62 242.7 151 75.5
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 2.6e-62 242.7 157 75.8
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 4.5e-62 241.9 151 76.2
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 5.9e-62 241.5 151 74.8
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 1.3e-61 240.4 156 74.4
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 1.7e-61 240.0 151 74.2
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 2.2e-61 239.6 153 73.2
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 2.9e-61 239.2 156 73.7
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 3.8e-61 238.8 152 73.7
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 6.5e-61 238.0 153 72.5
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 6.5e-61 238.0 152 73.7
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 6.5e-61 238.0 153 72.5
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 6.5e-61 238.0 153 72.5
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 6.5e-61 238.0 153 72.5
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 8.5e-61 237.7 153 73.2
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 8.5e-61 237.7 153 73.2
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 1.9e-60 236.5 170 70.0
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 2.5e-60 236.1 152 73.0
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 4.2e-60 235.3 159 71.7
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 1.2e-59 233.8 170 69.4
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 1.6e-59 233.4 153 73.9
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 2.7e-59 232.6 179 64.8
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 2.7e-59 232.6 179 65.4
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 2.7e-59 232.6 167 70.7
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 3.6e-59 232.3 175 67.4
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 6.1e-59 231.5 177 66.7
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 3.0e-58 229.2 162 68.5
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 6.7e-58 228.0 166 66.3
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 1.5e-57 226.9 152 68.4
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 3.3e-57 225.7 168 67.9
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 4.4e-57 225.3 156 69.2
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 4.4e-57 225.3 160 70.0
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 7.4e-57 224.6 173 62.4
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 9.7e-57 224.2 183 63.4
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 1.7e-56 223.4 159 71.1
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 3.7e-56 222.2 197 57.9
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 6.3e-56 221.5 155 71.6
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 1.1e-55 220.7 162 67.3
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 1.8e-55 219.9 174 63.2
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 1.8e-55 219.9 175 64.6
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 2.4e-55 219.5 151 72.8
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 5.3e-55 218.4 168 64.9
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 5.3e-55 218.4 151 67.5
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 7.0e-55 218.0 149 73.2
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 1.2e-54 217.2 156 64.1
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 1.2e-54 217.2 151 70.2
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 4.5e-54 215.3 151 71.5
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 3.8e-53 212.2 151 67.5
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 5.0e-53 211.8 153 66.0
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 1.9e-52 209.9 169 64.5
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 4.2e-52 208.8 182 59.9
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 2.1e-51 206.5 188 58.0
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 6.1e-51 204.9 158 62.7
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 8.0e-51 204.5 153 66.0
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 1.4e-50 203.8 150 66.0
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 5.2e-50 201.8 150 66.7
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 5.2e-50 201.8 154 63.0
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 6.7e-50 201.4 153 64.1
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 1.1e-49 200.7 153 60.8
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.5e-49 200.3 153 65.4
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 3.3e-49 199.1 155 60.6
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 7.5e-49 198.0 152 65.1
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 1.3e-48 197.2 162 59.3
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 3.7e-48 195.7 159 62.3
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 8.2e-48 194.5 165 58.8
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 1.1e-47 194.1 156 62.8
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 1.4e-47 193.7 200 54.0
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 3.1e-47 192.6 209 52.2
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 9.1e-47 191.0 119 74.8
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 9.1e-47 191.0 151 61.6
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 9.1e-47 191.0 154 60.4
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 9.1e-47 191.0 152 61.2
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 1.6e-46 190.3 121 73.6
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 2.7e-46 189.5 158 58.2
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 1.7e-45 186.8 148 61.5
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 2.2e-45 186.4 119 75.6
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 3.8e-45 185.7 172 57.0
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 8.5e-45 184.5 165 55.8
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.1e-44 184.1 126 71.4
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 1.5e-44 183.7 160 60.0
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 1.2e-43 180.6 151 61.6
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 2.1e-43 179.9 150 59.3
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 2.1e-43 179.9 113 75.2
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 2.7e-43 179.5 152 61.2
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 3.6e-43 179.1 155 56.1
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 4.7e-43 178.7 119 69.7
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 6.1e-43 178.3 112 75.0
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 6.1e-43 178.3 113 76.1
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 8.0e-43 177.9 164 56.7
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 8.0e-43 177.9 112 74.1
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 8.0e-43 177.9 112 75.9
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 8.0e-43 177.9 112 76.8
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 1.0e-42 177.6 148 59.5
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 2.3e-42 176.4 119 71.4
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 2.3e-42 176.4 114 73.7
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 4.0e-42 175.6 112 74.1
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 4.0e-42 175.6 120 70.8
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 5.2e-42 175.3 113 72.6
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 6.8e-42 174.9 151 60.9
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 8.8e-42 174.5 110 75.5
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 2.6e-41 172.9 112 74.1
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 3.4e-41 172.6 116 67.2
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 4.4e-41 172.2 151 57.0
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 5.7e-41 171.8 114 71.1
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 7.5e-41 171.4 139 62.6
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 3.7e-40 169.1 145 57.2
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 3.1e-39 166.0 153 57.5
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 4.1e-39 165.6 148 55.4
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 9.1e-39 164.5 129 62.8
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 2.0e-38 163.3 152 57.2
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 5.9e-38 161.8 148 56.8
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 2.5e-36 156.4 109 67.0
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 3.0e-34 149.4 153 57.5
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 1.5e-33 147.1 128 54.7
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 2.6e-33 146.4 134 57.5
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 3.4e-33 146.0 98 71.4
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 4.1e-31 139.0 77 83.1
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 5.4e-31 138.7 141 53.9
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 1.5e-28 130.6 110 56.4
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 1.9e-28 130.2 113 61.9
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 1.4e-26 124.0 149 47.0
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 6.8e-26 121.7 77 66.2
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 2.2e-24 116.7 72 76.4
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 2.4e-23 113.2 151 43.7
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 7.0e-23 111.7 104 53.8
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 1.2e-22 110.9 70 74.3
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 2.7e-22 109.8 72 72.2
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 4.6e-22 109.0 82 67.1
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 5.0e-21 105.5 73 68.5
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 8.6e-21 104.8 153 42.5
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 2.1e-19 100.1 154 37.0
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 3.6e-19 99.4 81 59.3
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.6e-17 93.2 120 47.5
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 5.8e-17 92.0 119 47.1
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 1.4e-15 87.4 64 65.6
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 3.0e-13 79.7 48 68.8
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 3.9e-13 79.3 55 67.3
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 4.0e-10 69.3 69 50.7
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 1.3e-08 64.3 44 61.4
Potri.019G133101 Populus trichocarpa HOM05D004274 ORTHO05D004980 2.2e-08 63.5 36 75.0
Hund24328 Selenicereus undatus HOM05D004274 ORTHO05D004980 8.3e-08 61.6 35 77.1
MD03G1046400 Malus domestica HOM05D004274 ORTHO05D004980 1.1e-07 61.2 37 70.3
Solyc09g018650.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 1.1e-07 61.2 38 71.1
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 1.4e-07 60.8 37 70.3
HPP92_015443 Vanilla planifolia HOM05D004274 ORTHO05D004980 1.4e-07 60.8 36 75.0
Actinidia34514 Actinidia chinensis HOM05D004274 ORTHO05D004980 1.9e-07 60.5 42 69.0
RcHm_v2.0_Chr5g0074021 Rosa chinensis HOM05D004274 ORTHO05D004980 5.4e-07 58.9 35 68.6
RcHm_v2.0_Chr1g0353171 Rosa chinensis HOM05D004274 ORTHO05D004980 1.2e-06 57.8 86 43.0
Sabra19G0129300 Salix brachista HOM05D004274 ORTHO05D004980 1.2e-06 57.8 33 78.8
MSTRG.21280 Avicennia marina HOM05D004274 ORTHO05D004980 1.6e-06 57.4 41 61.0
CDE08G1045 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 1.6e-06 57.4 36 66.7
HanXRQChr08g0231131 Helianthus annuus HOM05D004274 ORTHO05D004980 6.0e-06 55.5 38 63.2


User provided reference genes

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