Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0119900 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 1.5e-186 656.0 318 100.0
Os12g0119350 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 5.3e-168 594.3 318 92.8
Os12g0119700 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 4.1e-120 435.3 242 89.7
Zm00001eb078960 Zea mays HOM05D007287 ORTHO05D008965 6.7e-54 215.3 230 48.7
HPP92_015439 Vanilla planifolia HOM05D007287 ORTHO05D008965 4.3e-24 116.3 159 42.1
MBI15_g22001_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 1.9e-19 100.9 158 39.9
Nn5g26760 Nelumbo nucifera HOM05D007287 ORTHO05D008965 1.7e-17 94.4 166 35.5
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 2.5e-16 90.5 249 26.9
CDE07G0622 Ceratophyllum demersum HOM05D007287 ORTHO05D008965 7.3e-16 89.0 216 29.2
MBI15_g05588_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 7.3e-16 89.0 162 37.7
HanXRQChr11g0345021 Helianthus annuus HOM05D007287 ORTHO05D008965 9.5e-16 88.6 220 34.5
Cpa.g.sc60.59 Carica papaya HOM05D007287 ORTHO05D008965 1.2e-15 88.2 139 38.8
GSVIVG01029850001 Vitis vinifera HOM05D007287 ORTHO05D008965 1.6e-15 87.8 230 33.9
TWI74G0480 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 3.6e-15 86.7 138 37.0
Lsat_1_v5_gn_5_153761 Lactuca sativa HOM05D007287 ORTHO05D008965 4.7e-15 86.3 158 33.5
CsaV3_4G027460 Cucumis sativus L. HOM05D007287 ORTHO05D008965 1.1e-14 85.1 157 33.1
Ciclev10012636m.g Citrus clementina HOM05D007287 ORTHO05D008965 1.8e-14 84.3 140 36.4
Haze_21214 Corylus avellana HOM05D007287 ORTHO05D008965 2.3e-14 84.0 162 35.8
Prupe.6G299000 Prunus persica HOM05D007287 ORTHO05D008965 2.3e-14 84.0 163 35.0
PGR031G1010 Punica granatum HOM05D007287 ORTHO05D008965 3.1e-14 83.6 164 32.3
HPP92_018079 Vanilla planifolia HOM05D007287 ORTHO05D008965 3.1e-14 83.6 160 31.2
Cfa016991 Carpinus fangiana HOM05D007287 ORTHO05D008965 4.0e-14 83.2 162 35.8
CSS0027605 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 1.2e-13 81.6 164 32.9
Sabra04G0158300 Salix brachista HOM05D007287 ORTHO05D008965 1.2e-13 81.6 215 30.7
CSS0006882 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 1.5e-13 81.3 164 32.9
Oeu039292.1 Olea europaea HOM05D007287 ORTHO05D008965 1.5e-13 81.3 140 33.6
Potri.016G142100 Populus trichocarpa HOM05D007287 ORTHO05D008965 1.5e-13 81.3 143 37.8
Thecc.04G001200 Theobroma cacao HOM05D007287 ORTHO05D008965 1.5e-13 81.3 140 35.7
ECA248G0550 Erigeron canadensis HOM05D007287 ORTHO05D008965 2.6e-13 80.5 141 33.3
Aqoxy2G01629 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 5.8e-13 79.3 183 33.9
ClCG04G006100 Citrullus lanatus HOM05D007287 ORTHO05D008965 5.8e-13 79.3 144 31.2
Gohir.D02G000600 Gossypium hirsutum HOM05D007287 ORTHO05D008965 5.8e-13 79.3 140 35.7
Gorai.005G001000 Gossypium raimondii HOM05D007287 ORTHO05D008965 7.5e-13 79.0 158 34.2
vmacro08958 Vaccinium macrocarpon HOM05D007287 ORTHO05D008965 7.5e-13 79.0 253 30.8
EL10Ac6g15481 Beta vulgaris HOM05D007287 ORTHO05D008965 9.8e-13 78.6 169 32.5
MD04G1179200 Malus domestica HOM05D007287 ORTHO05D008965 9.8e-13 78.6 154 33.8
PSO384G1025 Papaver somniferum HOM05D007287 ORTHO05D008965 9.8e-13 78.6 244 29.5
Sc20g0007340 Simmondsia chinensis HOM05D007287 ORTHO05D008965 9.8e-13 78.6 164 33.5
Sc20g0007530 Simmondsia chinensis HOM05D007287 ORTHO05D008965 9.8e-13 78.6 164 33.5
AUR62006459 Chenopodium quinoa HOM05D007287 ORTHO05D008965 2.2e-12 77.4 140 33.6
Sabra06G0087700 Salix brachista HOM05D007287 ORTHO05D008965 2.2e-12 77.4 214 31.8
QL07p030582 Quercus lobata HOM05D007287 ORTHO05D008965 2.9e-12 77.0 216 31.9
QL07p031465 Quercus lobata HOM05D007287 ORTHO05D008965 2.9e-12 77.0 216 31.9
Glyma.16G221800 Glycine max HOM05D007287 ORTHO05D008965 3.7e-12 76.6 139 34.5
Rhsim04G0120200 Rhododendron simsii HOM05D007287 ORTHO05D008965 3.7e-12 76.6 228 30.3
Gohir.A02G000300 Gossypium hirsutum HOM05D007287 ORTHO05D008965 6.4e-12 75.9 159 33.3
Potri.006G112600 Populus trichocarpa HOM05D007287 ORTHO05D008965 6.4e-12 75.9 215 30.7
Eucgr.K01309 Eucalyptus grandis HOM05D007287 ORTHO05D008965 1.1e-11 75.1 138 31.2
Glyma.03G000900 Glycine max HOM05D007287 ORTHO05D008965 1.4e-11 74.7 139 33.1
MELO3C025269.2 Cucumis melo HOM05D007287 ORTHO05D008965 1.9e-11 74.3 139 33.1
Dinv16928 Davidia involucrata HOM05D007287 ORTHO05D008965 1.9e-11 74.3 139 31.7
FAN09G3442 Fragaria x ananassa HOM05D007287 ORTHO05D008965 1.9e-11 74.3 183 32.2
RcHm_v2.0_Chr3g0459671 Rosa chinensis HOM05D007287 ORTHO05D008965 1.9e-11 74.3 183 31.7
VMungo0331G1821 Vigna mungo HOM05D007287 ORTHO05D008965 1.9e-11 74.3 138 33.3
FvH4_6g09290 Fragaria vesca HOM05D007287 ORTHO05D008965 3.2e-11 73.6 180 32.2
Manes.08G167300 Manihot esculenta HOM05D007287 ORTHO05D008965 4.1e-11 73.2 235 28.1
TAR633G2304 Trochodendron aralioides HOM05D007287 ORTHO05D008965 4.1e-11 73.2 149 32.9
AUR62029815 Chenopodium quinoa HOM05D007287 ORTHO05D008965 5.4e-11 72.8 141 33.3
Duzib268G0768 Durio zibethinus HOM05D007287 ORTHO05D008965 9.2e-11 72.0 142 33.1
Lj3g0024711 Lotus japonicus HOM05D007287 ORTHO05D008965 9.2e-11 72.0 155 32.3
Peaxi162Scf00732g00008 Petunia axillaris HOM05D007287 ORTHO05D008965 9.2e-11 72.0 221 28.5
Sed0017124 Sechium edule HOM05D007287 ORTHO05D008965 9.2e-11 72.0 138 30.4
Nitab4.5_0002785g0030 Nicotiana tabacum HOM05D007287 ORTHO05D008965 1.6e-10 71.2 141 31.9
Phvul.010G060000 Phaseolus vulgaris HOM05D007287 ORTHO05D008965 2.7e-10 70.5 138 31.9
Manes.09G120600 Manihot esculenta HOM05D007287 ORTHO05D008965 3.5e-10 70.1 218 27.1
PSO339G4161 Papaver somniferum HOM05D007287 ORTHO05D008965 3.5e-10 70.1 250 28.0
Ah.02g119260 Amaranthus hybridus HOM05D007287 ORTHO05D008965 6.0e-10 69.3 172 32.6
HPP92_007548 Vanilla planifolia HOM05D043753 ORTHO05D051585 6.0e-10 69.3 128 35.2
HPP92_028105 Vanilla planifolia HOM05D043753 ORTHO05D051585 6.0e-10 69.3 128 35.2
Sopen09g026010 Solanum pennellii HOM05D007287 ORTHO05D008965 1.0e-09 68.6 234 27.8
Solyc09g031900.4 Solanum lycopersicum HOM05D007287 ORTHO05D008965 1.7e-09 67.8 235 27.2
CANSAT01G2619 Cannabis sativa HOM05D007287 ORTHO05D008965 2.3e-09 67.4 247 27.9
DCAR_023246 Daucus carota HOM05D007287 ORTHO05D008965 3.9e-09 66.6 195 30.8
Nitab4.5_0000356g0060 Nicotiana tabacum HOM05D007287 ORTHO05D008965 5.1e-09 66.2 146 30.1
TWI77G0104 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 5.1e-09 66.2 190 28.4
PGSC0003DMG400020867 Solanum tuberosum HOM05D007287 ORTHO05D008965 6.6e-09 65.9 141 30.5
SGA_v2.0_scaffold240G44057 Striga asiatica HOM05D007287 ORTHO05D008965 1.5e-08 64.7 141 34.0
Aqoxy1G02348 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 2.5e-08 63.9 156 34.0
Atru.chr8.50 Acer truncatum HOM05D007287 ORTHO05D008965 7.3e-08 62.4 154 32.5
FAN02G3892 Fragaria x ananassa HOM05D001484 ORTHO05D008965 7.3e-08 62.4 160 34.4
Actinidia20808 Actinidia chinensis HOM05D007287 ORTHO05D008965 3.6e-07 60.1 162 30.9
Aqoxy1G03140 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 6.2e-07 59.3 154 33.1
arahy.Tifrunner.gnm1.ann1.K8RLSB Arachis hypogaea HOM05D007287 ORTHO05D008965 1.4e-06 58.2 150 28.0
arahy.Tifrunner.gnm1.ann1.HN5ZMV Arachis hypogaea HOM05D007287 ORTHO05D008965 1.8e-06 57.8 150 28.7
MSTRG.26833 Avicennia marina HOM05D007287 ORTHO05D008965 2.3e-06 57.4 140 25.0


User provided reference genes

Program Settings