Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0117700 Oryza sativa ssp. japonica HOM05D032425 ORTHO05D036987 0.0e+00 1594.3 879 100.0
Os02g0464500 Oryza sativa ssp. japonica HOM05D032425 ORTHO05D036987 4.3e-175 619.4 916 46.6
Zm00001eb195450 Zea mays HOM05D032425 ORTHO05D036987 1.5e-140 504.6 1132 40.3
Nn5g26827 Nelumbo nucifera HOM05D005345 ORTHO05D004682 3.9e-11 74.7 138 32.6
Os07g0680600 Oryza sativa ssp. japonica HOM05D021806 ORTHO05D004682 1.9e-10 72.4 183 33.3
Os03g0334200 Oryza sativa ssp. japonica HOM05D021806 ORTHO05D004682 7.4e-10 70.5 166 32.5
Aqoxy4G03281 Aquilegia oxysepala HOM05D005345 ORTHO05D004682 2.8e-09 68.6 203 27.6
MBI03_g40812_MAGBIO Magnolia biondii HOM05D002045 ORTHO05D002014 2.8e-09 68.6 443 24.2
TAR633G2169 Trochodendron aralioides HOM05D005345 ORTHO05D004682 3.7e-09 68.2 229 27.5
LjContig00408g0007312 Lotus japonicus HOM05D005345 ORTHO05D004682 6.3e-09 67.4 105 40.0
PGR142G1797 Punica granatum HOM05D005345 ORTHO05D004682 5.3e-08 64.3 224 25.9
Zm00001eb015970 Zea mays HOM05D021806 ORTHO05D004682 6.9e-08 63.9 253 28.9
Atru.chr12.192 Acer truncatum HOM05D005345 ORTHO05D004682 9.1e-08 63.5 187 29.4
Zm00001eb111590 Zea mays HOM05D021806 ORTHO05D004682 9.1e-08 63.5 236 28.4
ATR1127G123 Amborella trichopoda HOM05D002045 ORTHO05D002014 2.6e-07 62.0 124 37.1
ECA238G0953 Erigeron canadensis HOM05D005345 ORTHO05D004682 4.5e-07 61.2 237 27.8
CANSAT21G1669 Cannabis sativa HOM05D002045 ORTHO05D002014 5.9e-07 60.8 54 53.7
Sabra19G0075200 Salix brachista HOM05D005345 ORTHO05D004682 1.0e-06 60.1 170 28.8
Zm00001eb395190 Zea mays HOM05D021806 ORTHO05D004682 1.0e-06 60.1 161 29.8
EL10Ac1g00305 Beta vulgaris HOM05D002045 ORTHO05D002014 1.3e-06 59.7 56 51.8
CiPaw.01G307600 Carya illinoinensis HOM05D005345 ORTHO05D004682 1.3e-06 59.7 37 73.0
ClCG11G005600 Citrullus lanatus HOM05D005345 ORTHO05D004682 1.3e-06 59.7 252 24.2
TPR.G33934 Trifolium pratense HOM05D005345 ORTHO05D004682 1.3e-06 59.7 112 33.9
Zm00001eb330730 Zea mays HOM05D021806 ORTHO05D004682 1.3e-06 59.7 229 31.4
HPP92_024982 Vanilla planifolia HOM05D005345 ORTHO05D004682 1.7e-06 59.3 41 61.0
Aqoxy7G00147 Aquilegia oxysepala HOM05D002045 ORTHO05D002014 2.2e-06 58.9 53 47.2
HanXRQChr16g0524031 Helianthus annuus HOM05D002045 ORTHO05D002014 2.2e-06 58.9 178 29.2
THA.LOC104826873 Tarenaya hassleriana HOM05D010812 ORTHO05D004682 2.2e-06 58.9 53 54.7
Ciclev10018757m.g Citrus clementina HOM05D002045 ORTHO05D002014 2.9e-06 58.5 53 52.8
DCAR_006968 Daucus carota HOM05D002045 ORTHO05D002014 2.9e-06 58.5 40 62.5
arahy.Tifrunner.gnm1.ann1.0QV8DZ Arachis hypogaea HOM05D005345 ORTHO05D004682 3.8e-06 58.2 50 50.0
arahy.Tifrunner.gnm1.ann1.A39QJ2 Arachis hypogaea HOM05D005345 ORTHO05D004682 3.8e-06 58.2 50 50.0
A10p31000 Brassica napus HOM05D010812 ORTHO05D004682 5.0e-06 57.8 105 35.2
RcHm_v2.0_Chr1g0372591 Rosa chinensis HOM05D005345 ORTHO05D004682 5.0e-06 57.8 276 26.8
Ca_23243_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 6.5e-06 57.4 216 27.3
Medtr3g093780 Medicago truncatula HOM05D005345 ORTHO05D004682 6.5e-06 57.4 133 27.8
SGA_v2.0_scaffold44G16618 Striga asiatica HOM05D005345 ORTHO05D004682 6.5e-06 57.4 117 33.3
CDE07G0207 Ceratophyllum demersum HOM05D002045 ORTHO05D002014 8.5e-06 57.0 117 34.2
PSO017G7165 Papaver somniferum HOM05D005345 ORTHO05D004682 8.5e-06 57.0 116 33.6
Peaxi162Scf00843g00002 Petunia axillaris HOM05D002045 ORTHO05D002014 8.5e-06 57.0 40 62.5
TWI34G1380 Tripterygium wilfordii HOM05D002045 ORTHO05D002014 8.5e-06 57.0 86 39.5


User provided reference genes

Program Settings