Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0113200 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 0.0e+00 1450.3 807 100.0
Os12g0112600 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 0.0e+00 1431.8 807 98.8
Zm00001eb406310 Zea mays HOM05D003671 ORTHO05D004285 2.6e-275 952.2 827 66.9
Zm00001eb195220 Zea mays HOM05D003671 ORTHO05D004285 4.4e-267 924.9 822 65.5
Zm00001eb163960 Zea mays HOM05D003671 ORTHO05D004285 2.4e-265 919.1 817 64.5
FAN05G3119 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.3e-125 454.9 921 40.2
FAN05G5788 Fragaria x ananassa HOM05D003671 ORTHO05D004285 6.4e-125 452.6 921 39.8
MBI15_g31431_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 2.3e-122 444.1 918 41.3
TAR633G2716 Trochodendron aralioides HOM05D003671 ORTHO05D004285 1.1e-121 441.8 923 41.5
FAN14G5445 Fragaria x ananassa HOM05D003671 ORTHO05D004285 2.8e-120 437.2 920 42.1
TAR636G3051 Trochodendron aralioides HOM05D003671 ORTHO05D004285 2.8e-120 437.2 923 41.1
Prupe.6G290600 Prunus persica HOM05D003671 ORTHO05D004285 4.7e-120 436.4 934 40.3
FvH4_6g10170 Fragaria vesca HOM05D003671 ORTHO05D004285 6.2e-120 436.0 920 42.0
RcHm_v2.0_Chr3g0460911 Rosa chinensis HOM05D003671 ORTHO05D004285 2.3e-119 434.1 926 40.4
TAR636G0316 Trochodendron aralioides HOM05D003671 ORTHO05D004285 5.2e-119 433.0 923 40.7
Atru.chr8.2376 Acer truncatum HOM05D003671 ORTHO05D004285 2.2e-117 427.6 922 40.8
Nn2g10354 Nelumbo nucifera HOM05D003671 ORTHO05D004285 6.4e-117 426.0 919 40.6
Actinidia11522 Actinidia chinensis HOM05D003671 ORTHO05D004285 7.3e-113 412.5 929 38.8
Manes.09G115800 Manihot esculenta HOM05D003671 ORTHO05D004285 7.3e-113 412.5 919 40.0
Cfa017060 Carpinus fangiana HOM05D003671 ORTHO05D004285 9.5e-113 412.1 919 41.5
CANSAT35G0504 Cannabis sativa HOM05D003671 ORTHO05D004285 2.1e-112 411.0 911 40.4
COL.COLO4_30007 Corchorus olitorius HOM05D003671 ORTHO05D004285 2.1e-112 411.0 910 41.8
CSS0037141 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 8.1e-112 409.1 934 38.2
Sabra04G0151200 Salix brachista HOM05D003671 ORTHO05D004285 1.4e-111 408.3 918 41.6
Hma1.2p1_1052F.1_g252340 Hydrangea macrophylla HOM05D003671 ORTHO05D004285 6.8e-111 406.0 927 39.1
CSS0036424 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 8.9e-111 405.6 934 38.1
Manes.09G116100 Manihot esculenta HOM05D003671 ORTHO05D004285 1.2e-110 405.2 929 39.2
QL07p032733 Quercus lobata HOM05D003671 ORTHO05D004285 1.2e-110 405.2 870 39.8
Duzib151G0206 Durio zibethinus HOM05D003671 ORTHO05D004285 2.0e-110 404.4 927 41.3
Potri.006G107500 Populus trichocarpa HOM05D003671 ORTHO05D004285 3.4e-110 403.7 931 39.3
Duzib212G0018 Durio zibethinus HOM05D003671 ORTHO05D004285 7.5e-110 402.5 926 40.3
Thecc.04G154700 Theobroma cacao HOM05D003671 ORTHO05D004285 9.9e-110 402.1 922 39.5
Ciclev10011037m.g Citrus clementina HOM05D003671 ORTHO05D004285 1.3e-109 401.7 925 39.2
Lalb_Chr19g0124051 Lupinus albus HOM05D003671 ORTHO05D004285 3.7e-109 400.2 904 40.2
Dinv25318 Davidia involucrata HOM05D003671 ORTHO05D004285 2.4e-108 397.5 935 37.6
FAN09G2383 Fragaria x ananassa HOM05D003671 ORTHO05D004285 4.1e-108 396.7 923 39.2
MD12G1185300 Malus domestica HOM05D003671 ORTHO05D004285 9.2e-108 395.6 922 39.2
PSO339G1890 Papaver somniferum HOM05D003671 ORTHO05D004285 9.2e-108 395.6 897 41.6
Glyma.18G211200 Glycine max HOM05D003671 ORTHO05D004285 1.2e-107 395.2 921 39.2
Sabra06G0083600 Salix brachista HOM05D003671 ORTHO05D004285 1.6e-107 394.8 922 39.9
PGR004G1797 Punica granatum HOM05D003671 ORTHO05D004285 6.0e-107 392.9 874 38.8
Glyma.09G277700 Glycine max HOM05D003671 ORTHO05D004285 7.8e-107 392.5 926 38.9
Lj1g0018847 Lotus japonicus HOM05D003671 ORTHO05D004285 1.7e-106 391.3 921 39.1
Glyma.09G277602 Glycine max HOM05D003671 ORTHO05D004285 3.0e-106 390.6 907 39.5
Potri.016G133700 Populus trichocarpa HOM05D003671 ORTHO05D004285 3.0e-106 390.6 927 40.5
PSO384G1707 Papaver somniferum HOM05D003671 ORTHO05D004285 6.6e-106 389.4 896 41.4
AUR62029686 Chenopodium quinoa HOM05D003671 ORTHO05D004285 1.9e-105 387.9 909 39.2
FAN02G1273 Fragaria x ananassa HOM05D003671 ORTHO05D004285 3.3e-105 387.1 919 39.8
Eucgr.K01274 Eucalyptus grandis HOM05D003671 ORTHO05D004285 1.2e-104 385.2 907 39.0
TWI77G0322 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.6e-104 384.8 918 38.6
MSTRG.18954 Avicennia marina HOM05D003671 ORTHO05D004285 2.8e-104 384.0 919 38.6
Actinidia29047 Actinidia chinensis HOM05D003671 ORTHO05D004285 4.0e-103 380.2 940 38.2
Aqoxy2G00724 Aquilegia oxysepala HOM05D003671 ORTHO05D004285 5.2e-103 379.8 908 37.6
CSS0031435 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 5.2e-103 379.8 919 36.9
THA.LOC104806637 Tarenaya hassleriana HOM05D003671 ORTHO05D004285 5.2e-103 379.8 862 39.9
MELO3C009114.2 Cucumis melo HOM05D003671 ORTHO05D004285 1.2e-102 378.6 917 38.5
CsaV3_3G033210 Cucumis sativus L. HOM05D003671 ORTHO05D004285 2.0e-102 377.9 916 38.5
CSS0025205 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 2.6e-102 377.5 919 36.8
SGA_v2.0_scaffold85G26648 Striga asiatica HOM05D003671 ORTHO05D004285 7.6e-102 375.9 904 37.6
Rhsim05G0229100 Rhododendron simsii HOM05D003671 ORTHO05D004285 1.3e-101 375.2 932 37.1
HPP92_018092 Vanilla planifolia HOM05D003671 ORTHO05D004285 1.7e-101 374.8 879 36.4
Ah.08g209720 Amaranthus hybridus HOM05D003671 ORTHO05D004285 3.8e-101 373.6 879 37.1
TPR.G4424 Trifolium pratense HOM05D003671 ORTHO05D004285 4.9e-101 373.2 884 40.5
ClCG10G022620 Citrullus lanatus HOM05D003671 ORTHO05D004285 6.4e-101 372.9 907 39.6
EL10Ac7g17060 Beta vulgaris HOM05D003671 ORTHO05D004285 3.2e-100 370.5 919 38.2
Psat0s1450g0040 Pisum sativum HOM05D003671 ORTHO05D004285 3.2e-100 370.5 922 38.4
vmacro20357 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 3.2e-100 370.5 796 39.3
Sed0011007 Sechium edule HOM05D003671 ORTHO05D004285 7.1e-100 369.4 927 38.0
VMungo1383G1272 Vigna mungo HOM05D003671 ORTHO05D004285 9.2e-100 369.0 882 40.0
Gorai.005G122800 Gossypium raimondii HOM05D003671 ORTHO05D004285 2.1e-99 367.9 918 35.7
CiPaw.10G164200 Carya illinoinensis HOM05D003671 ORTHO05D004285 3.5e-99 367.1 874 39.8
SGA_v2.0_scaffold373G50172 Striga asiatica HOM05D003671 ORTHO05D004285 3.5e-99 367.1 905 37.7
Ca_07750_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 1.3e-98 365.2 886 39.4
Migut.J00060 Erythranthe guttata HOM05D003671 ORTHO05D004285 3.0e-98 364.0 914 38.0
Lalb_Chr03g0043701 Lupinus albus HOM05D003671 ORTHO05D004285 6.6e-98 362.8 921 38.2
Rhsim04G0122600 Rhododendron simsii HOM05D003671 ORTHO05D004285 6.6e-98 362.8 918 36.4
Cc06_g00530 Coffea canephora HOM05D003671 ORTHO05D004285 1.9e-97 361.3 908 38.5
Medtr7g072520 Medicago truncatula HOM05D003671 ORTHO05D004285 5.6e-97 359.8 919 38.8
MSTRG.5514 Avicennia marina HOM05D003671 ORTHO05D004285 7.3e-97 359.4 926 38.0
Phvul.008G084400 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 7.3e-97 359.4 912 39.7
Dinv11386 Davidia involucrata HOM05D003671 ORTHO05D004285 9.6e-97 359.0 786 39.9
Lj3C942T7 Lonicera japonica HOM05D003671 ORTHO05D004285 1.2e-96 358.6 868 40.0
Phvul.008G084500 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 6.2e-96 356.3 917 38.9
Glyma.18G212400 Glycine max HOM05D003671 ORTHO05D004285 8.1e-96 355.9 920 39.0
arahy.Tifrunner.gnm1.ann1.616PIC Arachis hypogaea HOM05D003671 ORTHO05D004285 1.1e-95 355.5 925 38.6
Cpa.g.sc86.30 Carica papaya HOM05D003671 ORTHO05D004285 1.1e-95 355.5 747 43.2
Gohir.D02G108300 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.4e-95 355.1 902 38.0
arahy.Tifrunner.gnm1.ann1.8XV151 Arachis hypogaea HOM05D003671 ORTHO05D004285 1.8e-95 354.8 926 38.6
TWI74G1343 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.8e-95 354.8 920 37.6
Oeu026963.1 Olea europaea HOM05D003671 ORTHO05D004285 3.1e-95 354.0 745 41.5
Lj1g0001828 Lotus japonicus HOM05D003671 ORTHO05D004285 5.3e-95 353.2 777 42.1
AT3G51640 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 6.9e-95 352.8 781 38.2
Gohir.A03G088100 Gossypium hirsutum HOM05D003671 ORTHO05D004285 9.0e-95 352.4 904 37.8
Lalb_Chr07g0190641 Lupinus albus HOM05D003671 ORTHO05D004285 1.2e-94 352.1 900 38.9
Hund03740 Selenicereus undatus HOM05D003671 ORTHO05D004285 1.2e-94 352.1 916 34.1
Sc07g0005760 Simmondsia chinensis HOM05D003671 ORTHO05D004285 1.2e-94 352.1 921 37.1
Aa31LG5G23820 Aethionema arabicum HOM05D003671 ORTHO05D004285 1.5e-94 351.7 895 38.3
ECA247G1347 Erigeron canadensis HOM05D003671 ORTHO05D004285 1.5e-94 351.7 886 37.8
Ca_07746_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 2.0e-94 351.3 920 39.9
MD04G1172000 Malus domestica HOM05D003671 ORTHO05D004285 2.6e-94 350.9 915 38.9
Gorai.005G122900 Gossypium raimondii HOM05D003671 ORTHO05D004285 7.6e-94 349.4 897 37.8
MBI03_g38977_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 9.9e-94 349.0 728 42.0
Medtr7g072590 Medicago truncatula HOM05D003671 ORTHO05D004285 9.9e-94 349.0 892 39.3
Carub.0004s2047 Capsella rubella HOM05D003671 ORTHO05D004285 6.4e-93 346.3 876 37.9
AT3G51650 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 4.2e-92 343.6 792 37.2
Lalb_Chr01g0023661 Lupinus albus HOM05D003671 ORTHO05D004285 7.1e-92 342.8 911 36.1
C08p26830 Brassica napus HOM05D003671 ORTHO05D004285 3.5e-91 340.5 850 37.6
Gohir.A03G087500 Gossypium hirsutum HOM05D003671 ORTHO05D004285 8.7e-90 335.9 916 37.6
BcaB01g00434 Brassica carinata HOM05D003671 ORTHO05D004285 1.1e-89 335.5 854 37.4
BolC8t50298H Brassica oleracea HOM05D003671 ORTHO05D004285 1.1e-89 335.5 868 37.4
A09p44750 Brassica napus HOM05D003671 ORTHO05D004285 1.9e-89 334.7 860 37.1
BraA09t39936Z Brassica rapa HOM05D003671 ORTHO05D004285 1.9e-89 334.7 861 37.0
Thhalv10016251m.g Eutrema salsugineum HOM05D003671 ORTHO05D004285 1.9e-89 334.7 882 38.2
CARHR161250 Cardamine hirsuta HOM05D003671 ORTHO05D004285 1.3e-88 332.0 718 37.5
BcaB01g00498 Brassica carinata HOM05D003671 ORTHO05D004285 1.8e-87 328.2 839 37.3
BolC8t50300H Brassica oleracea HOM05D003671 ORTHO05D004285 1.8e-87 328.2 839 36.9
BraA09t39938Z Brassica rapa HOM05D003671 ORTHO05D004285 3.1e-87 327.4 836 37.4
C08p26840 Brassica napus HOM05D003671 ORTHO05D004285 4.0e-87 327.0 838 37.4
A09p44780 Brassica napus HOM05D003671 ORTHO05D004285 1.2e-86 325.5 836 37.1
BcaB01g00433 Brassica carinata HOM05D003671 ORTHO05D004285 7.6e-86 322.8 834 36.5
TWI53G1222 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 2.2e-85 321.2 914 36.0
AL5G32090 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 1.4e-84 318.5 882 34.2
Nitab4.5_0002348g0020 Nicotiana tabacum HOM05D003671 ORTHO05D004285 5.4e-84 316.6 924 37.3
PGSC0003DMG400013061 Solanum tuberosum HOM05D003671 ORTHO05D004285 2.7e-83 314.3 887 37.8
Nitab4.5_0007794g0010 Nicotiana tabacum HOM05D003671 ORTHO05D004285 6.0e-83 313.2 921 35.7
vmacro08928 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 1.3e-82 312.0 881 35.6
Solyc09g018310.4 Solanum lycopersicum HOM05D003671 ORTHO05D004285 4.3e-81 307.0 891 37.6
Sp4g20820 Schrenkiella parvula HOM05D003671 ORTHO05D004285 5.6e-81 306.6 826 36.4
Sopen09g011320 Solanum pennellii HOM05D003671 ORTHO05D004285 1.3e-80 305.4 895 37.8
CARHR133180 Cardamine hirsuta HOM05D003671 ORTHO05D004285 2.8e-80 304.3 859 36.9
CDE07G1826 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 8.1e-80 302.8 856 38.6
AL4G35770 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 1.8e-79 301.6 864 36.8
DCAR_010961 Daucus carota HOM05D003671 ORTHO05D004285 1.8e-79 301.6 733 34.5
Haze_21142 Corylus avellana HOM05D003671 ORTHO05D004285 6.9e-79 299.7 820 38.7
Nitab4.5_0000126g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 6.9e-79 299.7 886 37.6
Haze_21147 Corylus avellana HOM05D003671 ORTHO05D004285 9.0e-79 299.3 820 38.7
Nitab4.5_0002204g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 7.6e-78 296.2 782 37.7
Peaxi162Scf00595g00423 Petunia axillaris HOM05D003671 ORTHO05D004285 7.6e-78 296.2 913 35.9
Psat3g120920 Pisum sativum HOM05D003671 ORTHO05D004285 9.9e-78 295.8 863 36.6
CAN.G604.1 Capsicum annuum HOM05D003671 ORTHO05D004285 4.9e-77 293.5 923 34.2
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 8.4e-77 292.7 833 34.1
AUR62006358 Chenopodium quinoa HOM05D003671 ORTHO05D004285 7.1e-76 289.7 815 37.7
Oeu060440.1 Olea europaea HOM05D003671 ORTHO05D004285 1.6e-75 288.5 729 39.5
CiPaw.09G218900 Carya illinoinensis HOM05D003671 ORTHO05D004285 2.7e-75 287.7 906 34.3
DCAR_021427 Daucus carota HOM05D003671 ORTHO05D004285 7.9e-75 286.2 844 34.7
CAN.G15.24 Capsicum annuum HOM05D003671 ORTHO05D004285 8.7e-74 282.7 869 36.1
CDE04G0380 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 1.8e-71 275.0 718 40.4
Oeu060446.2 Olea europaea HOM05D003671 ORTHO05D004285 2.9e-69 267.7 817 36.7
Lsat_1_v5_gn_8_119680 Lactuca sativa HOM05D003671 ORTHO05D004285 1.6e-67 261.9 718 38.4
unitig_699.g19370 Utricularia gibba HOM05D003671 ORTHO05D004285 2.1e-67 261.5 721 37.9
HanXRQChr16g0510341 Helianthus annuus HOM05D003671 ORTHO05D004285 3.5e-67 260.8 755 36.2
PSO675G2859 Papaver somniferum HOM05D003671 ORTHO05D004285 1.0e-66 259.2 842 36.7
ECA236G1062 Erigeron canadensis HOM05D003671 ORTHO05D004285 5.1e-66 256.9 846 33.8
PSO541G0005 Papaver somniferum HOM05D003671 ORTHO05D004285 8.2e-64 249.6 839 34.8
Sed0014254 Sechium edule HOM05D003671 ORTHO05D004285 1.2e-62 245.7 457 39.2
HanXRQChr16g0510331 Helianthus annuus HOM05D003671 ORTHO05D004285 1.0e-58 232.6 754 33.6
ATR0012G011 Amborella trichopoda HOM05D003671 ORTHO05D004285 5.0e-53 213.8 809 30.4
SpUn1372_0010 Schrenkiella parvula HOM05D003671 ORTHO05D004285 6.5e-53 213.4 348 44.8
AagrBONN_evm.TU.Sc2ySwM_344.630 Anthoceros agrestis HOM05D003671 ORTHO05D004285 7.9e-51 206.5 138 72.5
Mapoly0100s0047 Marchantia polymorpha HOM05D003671 ORTHO05D004285 1.4e-50 205.7 163 64.4
SEGI_37069 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 9.1e-47 193.0 963 30.6
SEGI_27030 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 2.0e-46 191.8 276 42.0
Pp3c12_1780 Physcomitrium patens HOM05D003671 ORTHO05D004285 5.9e-46 190.3 136 64.0
Gohir.D02G108200 Gossypium hirsutum HOM05D003671 ORTHO05D004285 7.7e-46 189.9 800 30.1
GSVIVG01030211001 Vitis vinifera HOM05D003671 ORTHO05D004285 3.8e-45 187.6 738 34.7
Nn5g26901 Nelumbo nucifera HOM05D003671 ORTHO05D004285 2.7e-43 181.4 490 33.7
SEGI_35920 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 2.4e-39 168.3 134 59.0
SEGI_23390 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 7.0e-39 166.8 260 40.8
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 2.2e-37 161.8 737 32.7
MBI03_g10316_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 6.8e-34 150.2 109 71.6
SEGI_38845 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 6.8e-34 150.2 118 59.3
Peaxi162Scf00732g00447 Petunia axillaris HOM05D003671 ORTHO05D004285 7.5e-33 146.7 863 32.4
TPR.G4425 Trifolium pratense HOM05D003671 ORTHO05D004285 1.7e-32 145.6 756 33.1
TPR.G35754 Trifolium pratense HOM05D003671 ORTHO05D004285 2.2e-32 145.2 97 75.3
VMungo1383G0904 Vigna mungo HOM05D003671 ORTHO05D004285 1.9e-28 132.1 291 36.4
ATR0681G108 Amborella trichopoda HOM05D003671 ORTHO05D004285 5.5e-28 130.6 442 29.9
CAN.G179.38 Capsicum annuum HOM05D003671 ORTHO05D004285 1.0e-21 109.8 68 72.1
Oeu060441.1 Olea europaea HOM05D003671 ORTHO05D004285 2.9e-21 108.2 230 39.1
Oeu026958.1 Olea europaea HOM05D003671 ORTHO05D004285 1.2e-17 96.3 358 32.1
Sp5g10620 Schrenkiella parvula HOM05D003671 ORTHO05D004285 3.7e-16 91.3 224 32.6
ATR0681G103 Amborella trichopoda HOM05D003671 ORTHO05D004285 7.0e-15 87.0 181 37.6
Sc02g0000840 Simmondsia chinensis HOM05D003671 ORTHO05D004285 2.7e-14 85.1 271 32.8
Haze_23239 Corylus avellana HOM05D003671 ORTHO05D004285 4.1e-07 61.2 244 47.5


User provided reference genes

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