Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0112900 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 2.7e-62 241.9 128 100.0
Os12g0112300 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 2.5e-39 165.6 111 84.7
Zm00001eb406320 Zea mays HOM05D006817 ORTHO05D008603 2.7e-30 135.6 99 74.7
MBI15_g27349_MAGBIO Magnolia biondii HOM05D006817 ORTHO05D008603 5.5e-23 111.3 99 64.6
MSTRG.27274 Avicennia marina HOM05D006817 ORTHO05D008603 7.2e-23 110.9 96 66.7
THA.LOC104816518 Tarenaya hassleriana HOM05D006817 ORTHO05D008603 7.2e-23 110.9 110 60.9
Atru.chr12.157 Acer truncatum HOM05D006817 ORTHO05D008603 9.4e-23 110.5 99 61.6
EL10Ac2g04256 Beta vulgaris HOM05D006817 ORTHO05D008603 2.7e-22 109.0 102 59.8
Gohir.A10G180300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 2.7e-22 109.0 104 59.6
Gohir.D10G187300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 2.7e-22 109.0 104 59.6
Sp6g37510 Schrenkiella parvula HOM05D006817 ORTHO05D008603 3.6e-22 108.6 102 59.8
CDE04G2280 Ceratophyllum demersum HOM05D006817 ORTHO05D008603 4.7e-22 108.2 96 64.6
Cc02_g05530 Coffea canephora HOM05D006817 ORTHO05D008603 6.1e-22 107.8 99 61.6
Migut.F00593 Erythranthe guttata HOM05D006817 ORTHO05D008603 6.1e-22 107.8 104 59.6
BolC9t59902H Brassica oleracea HOM05D006817 ORTHO05D008603 8.0e-22 107.5 102 60.8
Thhalv10013352m.g Eutrema salsugineum HOM05D006817 ORTHO05D008603 8.0e-22 107.5 102 59.8
Sc11g0005730 Simmondsia chinensis HOM05D006817 ORTHO05D008603 8.0e-22 107.5 99 58.6
BcaC06g32240 Brassica carinata HOM05D006817 ORTHO05D008603 1.0e-21 107.1 102 60.8
A10p30880 Brassica napus HOM05D006817 ORTHO05D008603 1.0e-21 107.1 102 60.8
C09p71390 Brassica napus HOM05D006817 ORTHO05D008603 1.0e-21 107.1 102 60.8
BraA10t45133Z Brassica rapa HOM05D006817 ORTHO05D008603 1.0e-21 107.1 102 60.8
Ah.16g104230 Amaranthus hybridus HOM05D006817 ORTHO05D008603 1.4e-21 106.7 99 60.6
Gorai.011G210100 Gossypium raimondii HOM05D006817 ORTHO05D008603 1.4e-21 106.7 104 58.7
Aqoxy4G02362 Aquilegia oxysepala HOM05D006817 ORTHO05D008603 1.8e-21 106.3 104 57.7
Cpa.g.sc19.86 Carica papaya HOM05D006817 ORTHO05D008603 1.8e-21 106.3 99 60.6
COL.COLO4_10038 Corchorus olitorius HOM05D006817 ORTHO05D008603 1.8e-21 106.3 104 59.6
Lj5g0023407 Lotus japonicus HOM05D006817 ORTHO05D008603 1.8e-21 106.3 105 59.0
Nitab4.5_0011715g0010 Nicotiana tabacum HOM05D006817 ORTHO05D008603 1.8e-21 106.3 99 59.6
TAR623G0065 Trochodendron aralioides HOM05D006817 ORTHO05D008603 1.8e-21 106.3 99 60.6
AUR62003430 Chenopodium quinoa HOM05D006817 ORTHO05D008603 2.3e-21 105.9 81 70.4
AUR62031486 Chenopodium quinoa HOM05D006817 ORTHO05D008603 2.3e-21 105.9 81 70.4
CsaV3_5G010750 Cucumis sativus L. HOM05D006817 ORTHO05D008603 2.3e-21 105.9 99 61.6
Cfa001223 Carpinus fangiana HOM05D006817 ORTHO05D008603 3.0e-21 105.5 99 59.6
ClCG07G004850 Citrullus lanatus HOM05D006817 ORTHO05D008603 3.0e-21 105.5 99 61.6
Sed0020006 Sechium edule HOM05D006817 ORTHO05D008603 3.0e-21 105.5 99 60.6
SGA_v2.0_scaffold44G16643 Striga asiatica HOM05D006817 ORTHO05D008603 3.0e-21 105.5 91 65.9
MELO3C020113.2 Cucumis melo HOM05D006817 ORTHO05D008603 4.0e-21 105.1 99 60.6
Manes.10G004900 Manihot esculenta HOM05D006817 ORTHO05D008603 5.2e-21 104.8 99 58.6
Solyc06g050210.3 Solanum lycopersicum HOM05D006817 ORTHO05D008603 5.2e-21 104.8 104 57.7
Sopen06g015650 Solanum pennellii HOM05D006817 ORTHO05D008603 5.2e-21 104.8 104 57.7
Thecc.10G176900 Theobroma cacao HOM05D006817 ORTHO05D008603 5.2e-21 104.8 102 57.8
TPR.G24539 Trifolium pratense HOM05D006817 ORTHO05D008603 5.2e-21 104.8 99 61.6
Haze_17339 Corylus avellana HOM05D006817 ORTHO05D008603 6.7e-21 104.4 83 67.5
Eucgr.J00131 Eucalyptus grandis HOM05D006817 ORTHO05D008603 6.7e-21 104.4 110 58.2
Potri.019G048700 Populus trichocarpa HOM05D006817 ORTHO05D008603 6.7e-21 104.4 99 57.6
Prupe.2G261900 Prunus persica HOM05D006817 ORTHO05D008603 6.7e-21 104.4 99 59.6
arahy.Tifrunner.gnm1.ann1.6QBV89 Arachis hypogaea HOM05D006817 ORTHO05D008603 8.8e-21 104.0 99 60.6
arahy.Tifrunner.gnm1.ann1.6ZT9VY Arachis hypogaea HOM05D006817 ORTHO05D008603 8.8e-21 104.0 99 60.6
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 8.8e-21 104.0 99 60.6
FvH4_7g25690 Fragaria vesca HOM05D006817 ORTHO05D008603 8.8e-21 104.0 100 60.0
ATR0681G057 Amborella trichopoda HOM05D006817 ORTHO05D008603 1.1e-20 103.6 96 60.4
GSVIVG01032704001 Vitis vinifera HOM05D006817 ORTHO05D008603 1.1e-20 103.6 92 64.1
CiPaw.02G198400 Carya illinoinensis HOM05D006817 ORTHO05D008603 1.5e-20 103.2 104 57.7
RcHm_v2.0_Chr1g0371891 Rosa chinensis HOM05D006817 ORTHO05D008603 1.5e-20 103.2 99 59.6
TWI09G1614 Tripterygium wilfordii HOM05D006817 ORTHO05D008603 1.5e-20 103.2 103 58.3
AUR62012358 Chenopodium quinoa HOM05D006817 ORTHO05D008603 2.0e-20 102.8 81 69.1
Glyma.19G067100 Glycine max HOM05D006817 ORTHO05D008603 2.0e-20 102.8 99 59.6
Nn2g10348 Nelumbo nucifera HOM05D006817 ORTHO05D008603 2.0e-20 102.8 98 60.2
Phvul.001G074700 Phaseolus vulgaris HOM05D006817 ORTHO05D008603 2.0e-20 102.8 99 59.6
FAN03G2834 Fragaria x ananassa HOM05D006817 ORTHO05D008603 2.6e-20 102.4 96 61.5
HanXRQChr15g0493791 Helianthus annuus HOM05D006817 ORTHO05D008603 2.6e-20 102.4 88 59.1
Psat6g035880 Pisum sativum HOM05D006817 ORTHO05D008603 2.6e-20 102.4 99 58.6
Ciclev10031264m.g Citrus clementina HOM05D006817 ORTHO05D008603 3.3e-20 102.1 111 55.0
MD07G1231900 Malus domestica HOM05D006817 ORTHO05D008603 3.3e-20 102.1 99 58.6
VMungo0647G0362 Vigna mungo HOM05D006817 ORTHO05D008603 3.3e-20 102.1 99 58.6
FAN10G2384 Fragaria x ananassa HOM05D006817 ORTHO05D008603 4.4e-20 101.7 96 60.4
Oeu036532.1 Olea europaea HOM05D006817 ORTHO05D008603 4.4e-20 101.7 96 61.5
PSO017G6024 Papaver somniferum HOM05D006817 ORTHO05D008603 4.4e-20 101.7 96 57.3
PSO170G5674 Papaver somniferum HOM05D006817 ORTHO05D008603 4.4e-20 101.7 96 57.3
vmacro09974 Vaccinium macrocarpon HOM05D006817 ORTHO05D008603 4.4e-20 101.7 99 58.6
MD01G1164100 Malus domestica HOM05D006817 ORTHO05D008603 5.7e-20 101.3 108 55.6
CSS0030257 Camellia sinensis var. sinensis HOM05D006817 ORTHO05D008603 7.4e-20 100.9 99 58.6
CAN.G169.4 Capsicum annuum HOM05D006817 ORTHO05D008603 9.7e-20 100.5 99 56.6
ECA232G4264 Erigeron canadensis HOM05D006817 ORTHO05D008603 1.3e-19 100.1 92 57.6
Actinidia00992 Actinidia chinensis HOM05D006817 ORTHO05D008603 1.7e-19 99.8 99 58.6
FAN01G1353 Fragaria x ananassa HOM05D006817 ORTHO05D008603 1.7e-19 99.8 100 58.0
Medtr1g007630 Medicago truncatula HOM05D006817 ORTHO05D008603 1.7e-19 99.8 99 58.6
QL08p064576 Quercus lobata HOM05D006817 ORTHO05D008603 1.7e-19 99.8 83 63.9
PGR044G0301 Punica granatum HOM05D006817 ORTHO05D008603 2.2e-19 99.4 111 55.9
Rhsim09G0184300 Rhododendron simsii HOM05D006817 ORTHO05D008603 2.8e-19 99.0 92 63.0
Lsat_1_v5_gn_9_59361 Lactuca sativa HOM05D006817 ORTHO05D008603 4.8e-19 98.2 88 56.8
HPP92_019064 Vanilla planifolia HOM05D006817 ORTHO05D008603 2.4e-18 95.9 99 55.6
MD05G1328700 Malus domestica HOM05D006817 ORTHO05D008603 4.5e-17 91.7 123 50.4
DCAR_014588 Daucus carota HOM05D006817 ORTHO05D008603 1.7e-16 89.7 107 48.6
Peaxi162Scf00739g00017 Petunia axillaris HOM05D006817 ORTHO05D008603 2.2e-16 89.4 117 47.9
Ca_12776_v3 Cicer arietinum L. HOM05D006817 ORTHO05D008603 2.9e-16 89.0 77 63.6
FAN06G4794 Fragaria x ananassa HOM05D006817 ORTHO05D008603 8.5e-16 87.4 75 66.7
HanXRQChr08g0222561 Helianthus annuus HOM05D006817 ORTHO05D008603 1.1e-15 87.0 130 43.8
Lalb_Chr22g0360921 Lupinus albus HOM05D006817 ORTHO05D008603 3.2e-15 85.5 99 52.5
Pp3c22_2490 Physcomitrium patens HOM05D006817 ORTHO05D008603 1.2e-14 83.6 106 49.1
Lj8A57G58 Lonicera japonica HOM05D006817 ORTHO05D008603 1.6e-14 83.2 72 62.5
FAN06G1140 Fragaria x ananassa HOM05D006817 ORTHO05D008603 8.0e-14 80.9 56 76.8
MD17G1183400 Malus domestica HOM05D006817 ORTHO05D008603 5.7e-12 74.7 57 70.2
Aa31LG11G6330 Aethionema arabicum HOM05D006817 ORTHO05D008603 2.2e-11 72.8 55 67.3
Sabra19G0058300 Salix brachista HOM05D000055 ORTHO05D000057 1.6e-09 66.6 65 56.9
Cre08.g361000 Chlamydomonas reinhardtii HOM05D006817 ORTHO05D008603 1.2e-06 57.0 59 47.5


User provided reference genes

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