Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0112800 Oryza sativa ssp. japonica HOM05D001122 ORTHO05D003607 2.8e-79 298.5 148 100.0
Os12g0112200 Oryza sativa ssp. japonica HOM05D001122 ORTHO05D003607 2.3e-65 252.3 133 96.2
Zm00001eb406340 Zea mays HOM05D001122 ORTHO05D003607 6.6e-28 127.9 128 55.5
Zm00001eb163980 Zea mays HOM05D001122 ORTHO05D003607 2.5e-27 125.9 125 58.4
Zm00001eb318120 Zea mays HOM05D001122 ORTHO05D003607 4.3e-27 125.2 125 57.6
Zm00001eb167030 Zea mays HOM05D001122 ORTHO05D003607 5.6e-27 124.8 125 57.6
Zm00001eb423520 Zea mays HOM05D001122 ORTHO05D003607 5.6e-27 124.8 125 57.6
Zm00001eb168900 Zea mays HOM05D001122 ORTHO05D003607 1.2e-26 123.6 125 56.8
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 4.7e-26 121.7 100 63.0
GSVIVG01030214001 Vitis vinifera HOM05D001122 ORTHO05D003607 6.6e-12 74.7 142 31.0
Dinv25315 Davidia involucrata HOM05D001122 ORTHO05D003607 8.6e-12 74.3 126 31.7
Zm00001eb035560 Zea mays HOM05D001122 ORTHO05D003607 1.9e-11 73.2 40 80.0
Solyc10g085430.3 Solanum lycopersicum HOM05D001122 ORTHO05D003607 2.5e-11 72.8 134 34.3
Sopen10g034880 Solanum pennellii HOM05D001122 ORTHO05D003607 2.5e-11 72.8 134 34.3
Lj3g0009835 Lotus japonicus HOM05D001122 ORTHO05D003607 3.3e-11 72.4 73 39.7
Lalb_Chr04g0259291 Lupinus albus HOM05D001122 ORTHO05D003607 4.3e-11 72.0 75 41.3
Eucgr.A00687 Eucalyptus grandis HOM05D001122 ORTHO05D003607 5.6e-11 71.6 72 37.5
Glyma.18G212100 Glycine max HOM05D001122 ORTHO05D003607 5.6e-11 71.6 72 45.8
Manes.09G115700 Manihot esculenta HOM05D001122 ORTHO05D003607 5.6e-11 71.6 133 30.8
Lj2A62T70 Lonicera japonica HOM05D001122 ORTHO05D003607 7.3e-11 71.2 71 40.8
Lj1g0017699 Lotus japonicus HOM05D001122 ORTHO05D003607 7.3e-11 71.2 72 44.4
TWI77G0482 Tripterygium wilfordii HOM05D001122 ORTHO05D003607 7.3e-11 71.2 134 33.6
Hma1.2p1_0118F.1_g056550 Hydrangea macrophylla HOM05D001122 ORTHO05D003607 9.5e-11 70.9 70 40.0
vmacro20356 Vaccinium macrocarpon HOM05D001122 ORTHO05D003607 9.5e-11 70.9 133 27.8
CsaV3_UNG105770 Cucumis sativus L. HOM05D001122 ORTHO05D003607 1.6e-10 70.1 135 30.4
Duzib151G0339 Durio zibethinus HOM05D001122 ORTHO05D003607 1.6e-10 70.1 134 29.9
MBI15_g26245_MAGBIO Magnolia biondii HOM05D001122 ORTHO05D003607 1.6e-10 70.1 89 41.6
RcHm_v2.0_Chr3g0460961 Rosa chinensis HOM05D001122 ORTHO05D003607 1.6e-10 70.1 73 39.7
TAR623G0962 Trochodendron aralioides HOM05D001122 ORTHO05D001877 1.6e-10 70.1 127 31.5
CAN.G738.7 Capsicum annuum HOM05D001122 ORTHO05D003607 2.8e-10 69.3 134 32.1
Ca_19773_v3 Cicer arietinum L. HOM05D001122 ORTHO05D003607 2.8e-10 69.3 70 44.3
Ciclev10011064m.g Citrus clementina HOM05D001122 ORTHO05D001877 2.8e-10 69.3 72 38.9
SGA_v2.0_scaffold85G26650 Striga asiatica HOM05D001122 ORTHO05D003607 2.8e-10 69.3 73 38.4
Dinv11389 Davidia involucrata HOM05D001122 ORTHO05D003607 3.6e-10 68.9 140 30.0
arahy.Tifrunner.gnm1.ann1.DF4ABA Arachis hypogaea HOM05D001122 ORTHO05D003607 4.7e-10 68.6 72 41.7
arahy.Tifrunner.gnm1.ann1.U3MJA7 Arachis hypogaea HOM05D001122 ORTHO05D003607 4.7e-10 68.6 72 41.7
Gohir.A02G004800 Gossypium hirsutum HOM05D001122 ORTHO05D003607 4.7e-10 68.6 134 29.9
Oeu060447.2 Olea europaea HOM05D001122 ORTHO05D003607 4.7e-10 68.6 73 42.5
SGA_v2.0_scaffold373G50170 Striga asiatica HOM05D001122 ORTHO05D003607 4.7e-10 68.6 133 29.3
DCAR_015347 Daucus carota HOM05D001122 ORTHO05D001877 6.2e-10 68.2 72 38.9
Aqoxy2G00741 Aquilegia oxysepala HOM05D001122 ORTHO05D003607 8.1e-10 67.8 72 41.7
Gohir.A10G149300 Gossypium hirsutum HOM05D001122 ORTHO05D003607 8.1e-10 67.8 69 42.0
Gohir.D02G005100 Gossypium hirsutum HOM05D001122 ORTHO05D003607 8.1e-10 67.8 72 38.9
HanXRQChr10g0286291 Helianthus annuus HOM05D001122 ORTHO05D003607 8.1e-10 67.8 71 42.3
TWI74G0479 Tripterygium wilfordii HOM05D001122 ORTHO05D003607 8.1e-10 67.8 134 32.1
GSVIVG01030215001 Vitis vinifera HOM05D001122 ORTHO05D003607 8.1e-10 67.8 73 39.7
Duzib212G0732 Durio zibethinus HOM05D001122 ORTHO05D003607 1.1e-09 67.4 135 27.4
Atru.chr8.2374 Acer truncatum HOM05D001122 ORTHO05D003607 1.4e-09 67.0 127 32.3
Glyma.01G131400 Glycine max HOM05D001122 ORTHO05D003607 1.4e-09 67.0 73 38.4
Gohir.D10G117500 Gossypium hirsutum HOM05D001122 ORTHO05D003607 1.4e-09 67.0 69 39.1
Zm00001eb350240 Zea mays HOM05D001122 ORTHO05D003607 1.8e-09 66.6 98 36.7
MSTRG.18957 Avicennia marina HOM05D001122 ORTHO05D003607 2.4e-09 66.2 73 41.1
Ca_07748_v3 Cicer arietinum L. HOM05D001122 ORTHO05D003607 2.4e-09 66.2 67 40.3
ECA247G0333 Erigeron canadensis HOM05D001122 ORTHO05D003607 2.4e-09 66.2 71 40.8
FAN09G3749 Fragaria x ananassa HOM05D001122 ORTHO05D003607 2.4e-09 66.2 73 37.0
Glyma.09G277100 Glycine max HOM05D001122 ORTHO05D003607 2.4e-09 66.2 72 40.3
Sabra06G0083500 Salix brachista HOM05D001122 ORTHO05D001877 2.4e-09 66.2 94 30.9
TPR.G4415 Trifolium pratense HOM05D001122 ORTHO05D003607 2.4e-09 66.2 67 38.8
VMungo1383G1340 Vigna mungo HOM05D001122 ORTHO05D003607 2.4e-09 66.2 67 44.8
FAN02G3784 Fragaria x ananassa HOM05D001122 ORTHO05D003607 3.1e-09 65.9 73 37.0
Peaxi162Scf00009g00811 Petunia axillaris HOM05D001122 ORTHO05D003607 3.1e-09 65.9 132 31.8
Thecc.04G154900 Theobroma cacao HOM05D001122 ORTHO05D003607 3.1e-09 65.9 135 26.7
TWI53G1003 Tripterygium wilfordii HOM05D001122 ORTHO05D003607 3.1e-09 65.9 128 32.0
CANSAT35G1279 Cannabis sativa HOM05D001122 ORTHO05D003607 4.0e-09 65.5 107 30.8
ClCG04G006470 Citrullus lanatus HOM05D001122 ORTHO05D003607 4.0e-09 65.5 80 36.2
Glyma.09G277200 Glycine max HOM05D001122 ORTHO05D003607 4.0e-09 65.5 67 41.8
Prupe.6G290000 Prunus persica HOM05D001122 ORTHO05D003607 4.0e-09 65.5 71 36.6
VMungo0331G1328 Vigna mungo HOM05D001122 ORTHO05D003607 4.0e-09 65.5 73 38.4
VMungo1383G1499 Vigna mungo HOM05D001122 ORTHO05D003607 4.0e-09 65.5 67 37.3
Medtr7g072560 Medicago truncatula HOM05D001122 ORTHO05D003607 5.2e-09 65.1 67 37.3
Nn2g13337 Nelumbo nucifera HOM05D001122 ORTHO05D003607 5.2e-09 65.1 138 31.2
CSS0024307 Camellia sinensis var. sinensis HOM05D001122 ORTHO05D003607 6.8e-09 64.7 72 34.7
COL.COLO4_30004 Corchorus olitorius HOM05D001122 ORTHO05D003607 6.8e-09 64.7 135 28.1
QL07p032778 Quercus lobata HOM05D001122 ORTHO05D003607 6.8e-09 64.7 87 35.6
Rhsim05G0229000 Rhododendron simsii HOM05D001122 ORTHO05D003607 6.8e-09 64.7 140 30.0
CSS0038239 Camellia sinensis var. sinensis HOM05D001122 ORTHO05D003607 8.9e-09 64.3 128 28.9
CSS0043268 Camellia sinensis var. sinensis HOM05D001122 ORTHO05D003607 8.9e-09 64.3 69 37.7
FvH4_6g10220 Fragaria vesca HOM05D001122 ORTHO05D003607 8.9e-09 64.3 73 35.6
Glyma.18G211900 Glycine max HOM05D001122 ORTHO05D003607 8.9e-09 64.3 67 40.3
Glyma.19G111400 Glycine max HOM05D001122 ORTHO05D003607 8.9e-09 64.3 72 40.3
Glyma.19G111500 Glycine max HOM05D001122 ORTHO05D003607 8.9e-09 64.3 67 41.8
Gorai.005G005800 Gossypium raimondii HOM05D001122 ORTHO05D003607 8.9e-09 64.3 72 37.5
PGR031G1876 Punica granatum HOM05D001122 ORTHO05D003607 8.9e-09 64.3 73 34.2
TAR623G1430 Trochodendron aralioides HOM05D001122 ORTHO05D001877 8.9e-09 64.3 73 39.7
CiPaw.09G218500 Carya illinoinensis HOM05D001122 ORTHO05D003607 1.2e-08 63.9 73 37.0
CiPaw.10G164000 Carya illinoinensis HOM05D001122 ORTHO05D003607 1.2e-08 63.9 73 35.6
Migut.J00062 Erythranthe guttata HOM05D001122 ORTHO05D003607 1.2e-08 63.9 136 30.9
FAN05G4057 Fragaria x ananassa HOM05D001122 ORTHO05D003607 1.2e-08 63.9 73 35.6
FAN05G5303 Fragaria x ananassa HOM05D001122 ORTHO05D003607 1.2e-08 63.9 73 35.6
Gorai.011G129400 Gossypium raimondii HOM05D001122 ORTHO05D003607 1.2e-08 63.9 69 39.1
Lalb_Chr13g0291881 Lupinus albus HOM05D001122 ORTHO05D003607 1.2e-08 63.9 76 35.5
Potri.006G107300 Populus trichocarpa HOM05D001122 ORTHO05D003607 1.2e-08 63.9 133 24.8
Sed0009478 Sechium edule HOM05D001122 ORTHO05D003607 1.2e-08 63.9 80 33.8
CiPaw.09G218600 Carya illinoinensis HOM05D001122 ORTHO05D003607 1.5e-08 63.5 72 34.7
Psat3g120560 Pisum sativum HOM05D001122 ORTHO05D003607 1.5e-08 63.5 67 35.8
MELO3C026054.2 Cucumis melo HOM05D001122 ORTHO05D003607 2.0e-08 63.2 80 33.8
Rhsim04G0122900 Rhododendron simsii HOM05D001122 ORTHO05D003607 2.0e-08 63.2 71 36.6
Manes.08G173200 Manihot esculenta HOM05D001122 ORTHO05D003607 2.6e-08 62.8 140 27.1
Sc02g0000830 Simmondsia chinensis HOM05D001122 ORTHO05D003607 2.6e-08 62.8 71 33.8
CsaV3_4G027050 Cucumis sativus L. HOM05D001122 ORTHO05D003607 3.4e-08 62.4 135 29.6
Potri.016G133400 Populus trichocarpa HOM05D001122 ORTHO05D003607 4.4e-08 62.0 133 25.6
PGR004G2520 Punica granatum HOM05D001122 ORTHO05D003607 4.4e-08 62.0 107 29.0
Carub.0006s0003 Capsella rubella HOM05D001122 ORTHO05D003607 5.8e-08 61.6 86 33.7
Lsat_1_v5_gn_9_38061 Lactuca sativa HOM05D001122 ORTHO05D003607 5.8e-08 61.6 71 36.6
MD12G1184900 Malus domestica HOM05D001122 ORTHO05D003607 5.8e-08 61.6 71 35.2
Medtr4g029040 Medicago truncatula HOM05D001122 ORTHO05D003607 5.8e-08 61.6 67 40.3
vmacro23407 Vaccinium macrocarpon HOM05D001122 ORTHO05D003607 5.8e-08 61.6 72 31.9
Sabra04G0151000 Salix brachista HOM05D001122 ORTHO05D001877 7.6e-08 61.2 132 28.0
ATR0681G065 Amborella trichopoda HOM05D001122 ORTHO05D003607 9.9e-08 60.8 114 29.8
arahy.Tifrunner.gnm1.ann1.MH7SIY Arachis hypogaea HOM05D001122 ORTHO05D001877 9.9e-08 60.8 80 33.8
Duzib268G0086 Durio zibethinus HOM05D001122 ORTHO05D003607 9.9e-08 60.8 73 31.5
Oeu064875.2 Olea europaea HOM05D001122 ORTHO05D003607 1.3e-07 60.5 73 34.2
vmacro08930 Vaccinium macrocarpon HOM05D001122 ORTHO05D003607 1.3e-07 60.5 72 30.6
SHI12907 Sapria himalayana HOM05D001122 ORTHO05D003607 2.9e-07 59.3 69 37.7
HPP92_013871 Vanilla planifolia HOM05D001122 ORTHO05D003607 2.9e-07 59.3 71 32.4
Psat7g230080 Pisum sativum HOM05D001122 ORTHO05D003607 3.8e-07 58.9 73 37.0
Cfa017062 Carpinus fangiana HOM05D001122 ORTHO05D001877 4.9e-07 58.5 72 31.9
Haze_21140 Corylus avellana HOM05D001122 ORTHO05D003607 4.9e-07 58.5 72 30.6
Haze_21146 Corylus avellana HOM05D000055 ORTHO05D003607 4.9e-07 58.5 72 30.6
Nitab4.5_0009418g0020 Nicotiana tabacum HOM05D001122 ORTHO05D003607 4.9e-07 58.5 133 31.6
TPR.G4963 Trifolium pratense HOM05D001122 ORTHO05D003607 4.9e-07 58.5 69 37.7
Os05g0335100 Oryza sativa ssp. japonica HOM05D001122 ORTHO05D003607 6.4e-07 58.2 87 32.2
CDE04G1276 Ceratophyllum demersum HOM05D001122 ORTHO05D003607 8.4e-07 57.8 68 35.3
Nitab4.5_0000381g0010 Nicotiana tabacum HOM05D001122 ORTHO05D003607 8.4e-07 57.8 133 31.6
Os01g0166700 Oryza sativa ssp. japonica HOM05D001122 ORTHO05D003607 8.4e-07 57.8 77 32.5
Phvul.008G084800 Phaseolus vulgaris HOM05D001122 ORTHO05D003607 8.4e-07 57.8 67 32.8
Sed0026963 Sechium edule HOM05D001122 ORTHO05D003607 1.4e-06 57.0 131 26.0
HPP92_011979 Vanilla planifolia HOM05D001122 ORTHO05D003607 1.4e-06 57.0 70 34.3
Zm00001eb123280 Zea mays HOM05D001122 ORTHO05D003607 1.4e-06 57.0 75 32.0
AL5G32190 Arabidopsis lyrata HOM05D001122 ORTHO05D003607 1.9e-06 56.6 73 34.2
PGSC0003DMG400026572 Solanum tuberosum HOM05D001122 ORTHO05D003607 2.4e-06 56.2 134 29.1
AT3G51730 Arabidopsis thaliana HOM05D001122 ORTHO05D003607 3.2e-06 55.8 73 32.9
arahy.Tifrunner.gnm1.ann1.J7KKGP Arachis hypogaea HOM05D001122 ORTHO05D003607 3.2e-06 55.8 138 26.1
Solyc09g042700.4 Solanum lycopersicum HOM05D001122 ORTHO05D003607 3.2e-06 55.8 68 35.3
Actinidia32558 Actinidia chinensis HOM05D000044 ORTHO05D003607 4.2e-06 55.5 72 30.6
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 5.4e-06 55.1 72 34.7
CARHR161360 Cardamine hirsuta HOM05D001122 ORTHO05D003607 5.4e-06 55.1 73 31.5
Ah.15g090210 Amaranthus hybridus HOM05D001122 ORTHO05D003607 7.1e-06 54.7 68 32.4
Carub.0005s1807 Capsella rubella HOM05D001122 ORTHO05D003607 7.1e-06 54.7 73 32.9
EL10Ac7g17057 Beta vulgaris HOM05D001122 ORTHO05D003607 9.2e-06 54.3 68 30.9


User provided reference genes

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