Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0112000 Oryza sativa ssp. japonica HOM05D002454 ORTHO05D002581 4.8e-37 157.5 91 100.0
Os12g0111600 Oryza sativa ssp. japonica HOM05D002454 ORTHO05D002581 4.9e-34 147.5 86 94.2
Zm00001eb262690 Zea mays HOM05D002454 ORTHO05D002581 3.9e-23 111.3 93 65.6
Zm00001eb195180 Zea mays HOM05D002454 ORTHO05D002581 5.1e-23 110.9 90 64.4
Zm00001eb276270 Zea mays HOM05D002454 ORTHO05D002581 1.9e-22 109.0 90 64.4
MD07G1230200 Malus domestica HOM05D002454 ORTHO05D002581 6.5e-10 67.4 49 69.4
Eucgr.G03116 Eucalyptus grandis HOM05D002454 ORTHO05D002581 1.1e-09 66.6 49 69.4
ATR1127G079 Amborella trichopoda HOM05D002454 ORTHO05D002581 1.4e-09 66.2 49 69.4
MD01G1162000 Malus domestica HOM05D002454 ORTHO05D002581 1.4e-09 66.2 49 67.3
HPP92_019066 Vanilla planifolia HOM05D002454 ORTHO05D002581 1.4e-09 66.2 49 71.4
Solyc06g050870.3 Solanum lycopersicum HOM05D002454 ORTHO05D002581 2.5e-09 65.5 49 69.4
Sopen06g016550 Solanum pennellii HOM05D002454 ORTHO05D002581 2.5e-09 65.5 49 69.4
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 3.2e-09 65.1 86 44.2
PGR142G4142 Punica granatum HOM05D002454 ORTHO05D002581 4.2e-09 64.7 49 69.4
CSS0016666 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 5.5e-09 64.3 49 67.3
Manes.07G139000 Manihot esculenta HOM05D002454 ORTHO05D002581 5.5e-09 64.3 49 69.4
Peaxi162Scf00284g00019 Petunia axillaris HOM05D002454 ORTHO05D002581 7.2e-09 63.9 49 65.3
Atru.chr12.139 Acer truncatum HOM05D002454 ORTHO05D002581 9.4e-09 63.5 49 65.3
Peaxi162Scf00284g00020 Petunia axillaris HOM05D002454 ORTHO05D002581 9.4e-09 63.5 49 65.3
Cpa.g.sc19.96 Carica papaya HOM05D002454 ORTHO05D002581 1.2e-08 63.2 46 67.4
ClCG11G005830 Citrullus lanatus HOM05D002454 ORTHO05D002581 1.2e-08 63.2 49 65.3
Haze_17326 Corylus avellana HOM05D002454 ORTHO05D002581 1.2e-08 63.2 49 65.3
CsaV3_6G002150 Cucumis sativus L. HOM05D002454 ORTHO05D002581 1.2e-08 63.2 49 65.3
Nn2g13310 Nelumbo nucifera HOM05D002454 ORTHO05D002581 1.2e-08 63.2 47 66.0
Potri.019G056000 Populus trichocarpa HOM05D002454 ORTHO05D002581 1.6e-08 62.8 50 64.0
MELO3C019992.2 Cucumis melo HOM05D002454 ORTHO05D002581 2.1e-08 62.4 49 65.3
Sed0004084 Sechium edule HOM05D002454 ORTHO05D002581 2.1e-08 62.4 49 65.3
PGSC0003DMG400027976 Solanum tuberosum HOM05D002454 ORTHO05D002581 2.1e-08 62.4 49 67.3
Cc02_g05670 Coffea canephora HOM05D002454 ORTHO05D002581 2.7e-08 62.0 50 64.0
Dinv10555 Davidia involucrata HOM05D002454 ORTHO05D002581 3.6e-08 61.6 49 65.3
Nitab4.5_0000263g0170 Nicotiana tabacum HOM05D002454 ORTHO05D002581 3.6e-08 61.6 49 65.3
TAR362G0424 Trochodendron aralioides HOM05D002454 ORTHO05D002581 3.6e-08 61.6 49 63.3
ECA238G3914 Erigeron canadensis HOM05D002454 ORTHO05D002581 4.7e-08 61.2 50 66.0
HanXRQChr14g0460321 Helianthus annuus HOM05D002454 ORTHO05D002581 4.7e-08 61.2 50 64.0
Oeu024603.1 Olea europaea HOM05D002454 ORTHO05D002581 4.7e-08 61.2 47 66.0
Ah.16g104110 Amaranthus hybridus HOM05D002454 ORTHO05D002581 6.1e-08 60.8 50 62.0
Cfa001235 Carpinus fangiana HOM05D002454 ORTHO05D002581 6.1e-08 60.8 49 63.3
Duzib106G0273 Durio zibethinus HOM05D002454 ORTHO05D002581 6.1e-08 60.8 50 64.0
FvH4_7g25530 Fragaria vesca HOM05D002454 ORTHO05D002581 6.1e-08 60.8 49 63.3
FAN01G2207 Fragaria x ananassa HOM05D002454 ORTHO05D002581 6.1e-08 60.8 49 63.3
FAN03G1407 Fragaria x ananassa HOM05D002454 ORTHO05D002581 6.1e-08 60.8 49 63.3
FAN06G0980 Fragaria x ananassa HOM05D002454 ORTHO05D002581 6.1e-08 60.8 49 63.3
FAN10G2383 Fragaria x ananassa HOM05D002454 ORTHO05D002581 6.1e-08 60.8 49 63.3
Nn2g11081 Nelumbo nucifera HOM05D002454 ORTHO05D002581 6.1e-08 60.8 47 66.0
Sc10g0002820 Simmondsia chinensis HOM05D002454 ORTHO05D002581 6.1e-08 60.8 50 66.0
CiPaw.01G303900 Carya illinoinensis HOM05D002454 ORTHO05D002581 7.9e-08 60.5 49 63.3
COL.COLO4_38189 Corchorus olitorius HOM05D002454 ORTHO05D002581 7.9e-08 60.5 49 63.3
MBI15_g26252_MAGBIO Magnolia biondii HOM05D002454 ORTHO05D002581 1.0e-07 60.1 49 63.3
Nn2g11080 Nelumbo nucifera HOM05D002454 ORTHO05D002581 1.0e-07 60.1 50 66.0
Thecc.10G173500 Theobroma cacao HOM05D002454 ORTHO05D002581 1.0e-07 60.1 50 62.0
TWI09G0147 Tripterygium wilfordii HOM05D002454 ORTHO05D002581 1.0e-07 60.1 50 58.0
Aqoxy4G02150 Aquilegia oxysepala HOM05D002454 ORTHO05D002581 1.4e-07 59.7 50 60.0
arahy.Tifrunner.gnm1.ann1.B62TBJ Arachis hypogaea HOM05D002454 ORTHO05D002581 1.4e-07 59.7 47 68.1
MSTRG.8905 Avicennia marina HOM05D002454 ORTHO05D002581 1.4e-07 59.7 49 63.3
EL10Ac2g04286 Beta vulgaris HOM05D002454 ORTHO05D002581 1.4e-07 59.7 50 64.0
Glyma.02G259700 Glycine max HOM05D002454 ORTHO05D002581 1.4e-07 59.7 47 70.2
Lsat_1_v5_gn_2_126041 Lactuca sativa HOM05D002454 ORTHO05D002581 1.4e-07 59.7 50 64.0
CDE06G0495 Ceratophyllum demersum HOM05D002454 ORTHO05D002581 1.8e-07 59.3 49 65.3
Ciclev10033224m.g Citrus clementina HOM05D002454 ORTHO05D002581 1.8e-07 59.3 49 59.2
Hma1.2p1_0322F.1_g124760 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 1.8e-07 59.3 49 61.2
MBI13_g29640_MAGBIO Magnolia biondii HOM05D002454 ORTHO05D002581 1.8e-07 59.3 49 63.3
Nitab4.5_0000928g0010 Nicotiana tabacum HOM05D002454 ORTHO05D002581 1.8e-07 59.3 49 65.3
Rhsim09G0183400 Rhododendron simsii HOM05D002454 ORTHO05D002581 1.8e-07 59.3 49 63.3
SGA_v2.0_scaffold60G20930 Striga asiatica HOM05D002454 ORTHO05D002581 1.8e-07 59.3 49 63.3
GSVIVG01032718001 Vitis vinifera HOM05D002454 ORTHO05D002581 1.8e-07 59.3 50 64.0
Duzib114G0242 Durio zibethinus HOM05D002454 ORTHO05D002581 2.3e-07 58.9 50 62.0
QL05p010056 Quercus lobata HOM05D002454 ORTHO05D002581 2.3e-07 58.9 50 60.0
QL08p064313 Quercus lobata HOM05D002454 ORTHO05D002581 2.3e-07 58.9 50 60.0
QL12p021814 Quercus lobata HOM05D002454 ORTHO05D002581 2.3e-07 58.9 50 60.0
arahy.Tifrunner.gnm1.ann1.I20Q6X Arachis hypogaea HOM05D002454 ORTHO05D002581 3.0e-07 58.5 47 66.0
Ca_15180_v3 Cicer arietinum L. HOM05D002454 ORTHO05D002581 3.0e-07 58.5 50 66.0
arahy.Tifrunner.gnm1.ann1.P3THXV Arachis hypogaea HOM05D002454 ORTHO05D002581 3.9e-07 58.2 50 68.0
arahy.Tifrunner.gnm1.ann1.UN2NP6 Arachis hypogaea HOM05D002454 ORTHO05D002581 3.9e-07 58.2 50 68.0
Gohir.A05G280200 Gossypium hirsutum HOM05D002454 ORTHO05D002581 3.9e-07 58.2 52 61.5
Gohir.D10G188601 Gossypium hirsutum HOM05D002454 ORTHO05D002581 3.9e-07 58.2 50 60.0
Gorai.011G211500 Gossypium raimondii HOM05D002454 ORTHO05D002581 3.9e-07 58.2 50 60.0
Psat5g131400 Pisum sativum HOM05D002454 ORTHO05D002581 3.9e-07 58.2 50 64.0
TPR.G31628 Trifolium pratense HOM05D002454 ORTHO05D002581 3.9e-07 58.2 50 64.0
Lalb_Chr08g0231331 Lupinus albus HOM05D002454 ORTHO05D002581 5.1e-07 57.8 50 64.0
Manes.10G006200 Manihot esculenta HOM05D002454 ORTHO05D002581 5.1e-07 57.8 45 66.7
Medtr3g072170 Medicago truncatula HOM05D002454 ORTHO05D002581 5.1e-07 57.8 50 66.0
Psat2g024640 Pisum sativum HOM05D002454 ORTHO05D002581 5.1e-07 57.8 48 64.6
Gohir.D10G188700 Gossypium hirsutum HOM05D002454 ORTHO05D002581 6.7e-07 57.4 49 59.2
Gorai.011G211700 Gossypium raimondii HOM05D002454 ORTHO05D002581 6.7e-07 57.4 49 59.2
Phvul.001G248400 Phaseolus vulgaris HOM05D002454 ORTHO05D002581 6.7e-07 57.4 50 64.0
Glyma.18G022000 Glycine max HOM05D002454 ORTHO05D002581 8.8e-07 57.0 50 62.0
Gorai.009G295400 Gossypium raimondii HOM05D002454 ORTHO05D002581 8.8e-07 57.0 52 59.6
Lj6g0012676 Lotus japonicus HOM05D002454 ORTHO05D002581 8.8e-07 57.0 50 62.0
LjContig00357g0002802 Lotus japonicus HOM05D002454 ORTHO05D002581 8.8e-07 57.0 50 64.0
Hund13508 Selenicereus undatus HOM05D002454 ORTHO05D002581 8.8e-07 57.0 53 56.6
CDE07G0062 Ceratophyllum demersum HOM05D002454 ORTHO05D002581 1.5e-06 56.2 49 59.2
Glyma.11G235000 Glycine max HOM05D002454 ORTHO05D002581 1.5e-06 56.2 50 62.0
Gohir.A10G181600 Gossypium hirsutum HOM05D002454 ORTHO05D002581 1.5e-06 56.2 50 58.0
Phvul.008G218800 Phaseolus vulgaris HOM05D002454 ORTHO05D002581 2.0e-06 55.8 47 63.8
RcHm_v2.0_Chr1g0371531 Rosa chinensis HOM05D002454 ORTHO05D002581 2.0e-06 55.8 49 59.2
VMungo1383G1136 Vigna mungo HOM05D002454 ORTHO05D002581 2.0e-06 55.8 50 62.0
Gohir.D05G282000 Gossypium hirsutum HOM05D002454 ORTHO05D002581 2.6e-06 55.5 52 57.7
Lalb_Chr04g0250311 Lupinus albus HOM05D002454 ORTHO05D002581 3.3e-06 55.1 47 63.8
Prupe.2G260100 Prunus persica HOM05D002454 ORTHO05D002581 3.3e-06 55.1 49 55.1
Migut.F00582 Erythranthe guttata HOM05D002454 ORTHO05D002581 4.4e-06 54.7 47 59.6
DCAR_028543 Daucus carota HOM05D002454 ORTHO05D002581 9.7e-06 53.5 50 56.0


User provided reference genes

Program Settings