Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0106800 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 1.4e-128 463.0 239 100.0
Os12g0106100 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 8.5e-110 400.6 223 93.7
Zm00001eb195020 Zea mays HOM05D007204 ORTHO05D008593 4.5e-79 298.5 239 68.2
Nn2g10986 Nelumbo nucifera HOM05D007204 ORTHO05D008593 7.6e-34 148.3 222 43.7
PSO339G1295 Papaver somniferum HOM05D007204 ORTHO05D008593 1.3e-33 147.5 220 43.6
Zm00001eb025660 Zea mays HOM05D007204 ORTHO05D008593 2.4e-32 143.3 90 80.0
PSO801G0770 Papaver somniferum HOM05D007204 ORTHO05D008593 3.5e-31 139.4 220 43.2
Dinv09663 Davidia involucrata HOM05D007204 ORTHO05D008593 1.0e-30 137.9 223 41.3
MBI03_g33621_MAGBIO Magnolia biondii HOM05D007204 ORTHO05D008593 1.5e-29 134.0 291 34.4
Actinidia32616 Actinidia chinensis HOM05D007204 ORTHO05D008593 3.3e-29 132.9 232 38.8
Potri.001G281500 Populus trichocarpa HOM05D007204 ORTHO05D008593 3.3e-29 132.9 233 39.1
TWI31G1133 Tripterygium wilfordii HOM05D007204 ORTHO05D008593 3.3e-29 132.9 228 40.4
Duzib168G0028 Durio zibethinus HOM05D007204 ORTHO05D008593 5.6e-29 132.1 221 38.5
Sed0020276 Sechium edule HOM05D007204 ORTHO05D008593 9.6e-29 131.3 222 39.6
HPP92_019711 Vanilla planifolia HOM05D000883 ORTHO05D002942 9.6e-29 131.3 221 40.3
Cc01_g14730 Coffea canephora HOM05D007204 ORTHO05D008593 2.1e-28 130.2 223 38.1
AT1G07060 Arabidopsis thaliana HOM05D007204 ORTHO05D008593 2.8e-28 129.8 238 40.3
AL1G17180 Arabidopsis lyrata HOM05D007204 ORTHO05D008593 1.1e-27 127.9 231 39.8
Gorai.003G149500 Gossypium raimondii HOM05D007204 ORTHO05D008593 1.4e-27 127.5 231 38.5
Prupe.6G050500 Prunus persica HOM05D007204 ORTHO05D008593 1.4e-27 127.5 232 37.9
Atru.chr3.4133 Acer truncatum HOM05D007204 ORTHO05D008593 2.4e-27 126.7 218 39.9
Psat5g153840 Pisum sativum HOM05D007204 ORTHO05D008593 2.4e-27 126.7 223 39.5
FAN16G2350 Fragaria x ananassa HOM05D007204 ORTHO05D008593 4.0e-27 125.9 232 37.1
Gohir.D03G142400 Gossypium hirsutum HOM05D007204 ORTHO05D008593 4.0e-27 125.9 231 38.5
Carub.0001s0635 Capsella rubella HOM05D007204 ORTHO05D008593 5.3e-27 125.6 222 39.2
Sp1g05780 Schrenkiella parvula HOM05D007204 ORTHO05D008593 5.3e-27 125.6 232 37.9
FvH4_3g39530 Fragaria vesca HOM05D007204 ORTHO05D008593 9.0e-27 124.8 233 36.5
CARHR006750 Cardamine hirsuta HOM05D007204 ORTHO05D008593 1.2e-26 124.4 228 38.6
RcHm_v2.0_Chr5g0071301 Rosa chinensis HOM05D007204 ORTHO05D008593 1.2e-26 124.4 228 37.7
Thecc.09G355900 Theobroma cacao HOM05D007204 ORTHO05D008593 1.2e-26 124.4 218 37.6
GSVIVG01024663001 Vitis vinifera HOM05D007204 ORTHO05D008593 1.5e-26 124.0 222 38.3
A10p05600 Brassica napus HOM05D007204 ORTHO05D008593 2.0e-26 123.6 236 36.9
COL.COLO4_11129 Corchorus olitorius HOM05D007204 ORTHO05D008593 3.4e-26 122.9 231 36.4
Lj6g0005890 Lotus japonicus HOM05D007204 ORTHO05D008593 3.4e-26 122.9 241 37.8
PGR102G0940 Punica granatum HOM05D007204 ORTHO05D008593 3.4e-26 122.9 222 36.9
BcaC05g24670 Brassica carinata HOM05D007204 ORTHO05D008593 4.5e-26 122.5 236 36.9
C05p05140 Brassica napus HOM05D007204 ORTHO05D008593 4.5e-26 122.5 236 36.4
TPR.G32886 Trifolium pratense HOM05D007204 ORTHO05D008593 5.8e-26 122.1 214 39.7
Eucgr.B03990 Eucalyptus grandis HOM05D007204 ORTHO05D008593 7.6e-26 121.7 221 39.4
Manes.17G034600 Manihot esculenta HOM05D007204 ORTHO05D008593 7.6e-26 121.7 227 38.8
QL01p040026 Quercus lobata HOM05D007204 ORTHO05D008593 7.6e-26 121.7 226 39.8
TAR623G0341 Trochodendron aralioides HOM05D007204 ORTHO05D008593 1.3e-25 120.9 165 44.8
BcaNung06767 Brassica carinata HOM05D007204 ORTHO05D008593 2.2e-25 120.2 237 37.6
Ciclev10029273m.g Citrus clementina HOM05D007204 ORTHO05D008593 2.2e-25 120.2 195 38.5
MD11G1063300 Malus domestica HOM05D007204 ORTHO05D008593 2.9e-25 119.8 237 36.7
VMungo0540G1924 Vigna mungo HOM05D007204 ORTHO05D008593 2.9e-25 119.8 214 39.3
CiPaw.14G055100 Carya illinoinensis HOM05D007204 ORTHO05D008593 4.9e-25 119.0 230 38.3
FAN25G1877 Fragaria x ananassa HOM05D007204 ORTHO05D008593 4.9e-25 119.0 232 35.8
Sc21g0005220 Simmondsia chinensis HOM05D007204 ORTHO05D008593 4.9e-25 119.0 221 37.6
MELO3C026086.2 Cucumis melo HOM05D007204 ORTHO05D008593 6.4e-25 118.6 222 38.3
Phvul.006G073000 Phaseolus vulgaris HOM05D007204 ORTHO05D008593 1.9e-24 117.1 216 39.4
Rhsim13G0065200 Rhododendron simsii HOM05D007204 ORTHO05D008593 2.4e-24 116.7 294 32.3
Oeu034090.2 Olea europaea HOM05D007204 ORTHO05D008593 3.2e-24 116.3 255 34.5
Aqoxy2G00798 Aquilegia oxysepala HOM05D007204 ORTHO05D008593 9.3e-24 114.8 175 42.9
CsaV3_1G015330 Cucumis sativus L. HOM05D007204 ORTHO05D008593 1.2e-23 114.4 222 36.0
arahy.Tifrunner.gnm1.ann1.QCA2Y7 Arachis hypogaea HOM05D007204 ORTHO05D008593 2.1e-23 113.6 252 35.3
FAN11G3207 Fragaria x ananassa HOM05D007204 ORTHO05D008593 2.1e-23 113.6 188 39.4
arahy.Tifrunner.gnm1.ann1.IVNQ32 Arachis hypogaea HOM05D007204 ORTHO05D008593 2.7e-23 113.2 262 34.0
Aa31LG1G8110 Aethionema arabicum HOM05D007204 ORTHO05D008593 3.5e-23 112.8 230 37.0
BraA10t42821Z Brassica rapa HOM05D007204 ORTHO05D008593 3.5e-23 112.8 254 33.9
HanXRQChr08g0229231 Helianthus annuus HOM05D007204 ORTHO05D008593 3.5e-23 112.8 225 35.6
Nitab4.5_0007880g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 6.0e-23 112.1 228 36.4
THA.LOC104800761 Tarenaya hassleriana HOM05D007204 ORTHO05D008593 1.0e-22 111.3 228 37.3
AUR62009682 Chenopodium quinoa HOM05D007204 ORTHO05D008593 1.8e-22 110.5 223 36.8
BolC5t29286H Brassica oleracea HOM05D007204 ORTHO05D008593 3.0e-22 109.8 245 34.3
Thhalv10009490m.g Eutrema salsugineum HOM05D007204 ORTHO05D008593 3.0e-22 109.8 189 40.7
SGA_v2.0_scaffold146G36125 Striga asiatica HOM05D007204 ORTHO05D008593 2.5e-21 106.7 231 32.9
Hund18956 Selenicereus undatus HOM05D007204 ORTHO05D008593 1.3e-20 104.4 187 41.2
BcaNung06763 Brassica carinata HOM05D007204 ORTHO05D008593 1.6e-20 104.0 251 31.9
Migut.N00766 Erythranthe guttata HOM05D007204 ORTHO05D008593 2.8e-20 103.2 222 33.8
BcaC05g24674 Brassica carinata HOM05D007204 ORTHO05D008593 4.8e-20 102.4 174 39.1
Hma1.2p1_0841F.1_g226930 Hydrangea macrophylla HOM05D007204 ORTHO05D008593 4.8e-20 102.4 126 46.8
PGSC0003DMG400030457 Solanum tuberosum HOM05D007204 ORTHO05D008593 4.8e-20 102.4 171 39.8
Medtr3g031680 Medicago truncatula HOM05D007204 ORTHO05D008593 1.1e-19 101.3 159 42.1
ATR0174G030 Amborella trichopoda HOM05D007204 ORTHO05D008593 3.1e-19 99.8 174 36.8
MSTRG.9779 Avicennia marina HOM05D007204 ORTHO05D008593 4.0e-19 99.4 163 38.7
Peaxi162Scf00390g00079 Petunia axillaris HOM05D007204 ORTHO05D008593 4.0e-19 99.4 216 33.8
ClCG03G000270 Citrullus lanatus HOM05D007204 ORTHO05D008593 5.3e-19 99.0 220 36.4
DCAR_012274 Daucus carota HOM05D007204 ORTHO05D008593 5.3e-19 99.0 134 44.8
FAN21G2638 Fragaria x ananassa HOM05D007204 ORTHO05D008593 9.0e-19 98.2 210 31.9
Lsat_1_v5_gn_9_18401 Lactuca sativa HOM05D007204 ORTHO05D008593 1.2e-18 97.8 223 32.7
Medtr3g031720 Medicago truncatula HOM05D007204 ORTHO05D008593 2.6e-18 96.7 172 39.5
AUR62001886 Chenopodium quinoa HOM05D007204 ORTHO05D008593 3.4e-18 96.3 257 32.7
Lj2A1091T48 Lonicera japonica HOM05D007204 ORTHO05D008593 5.8e-18 95.5 125 43.2
Gohir.A03G026100 Gossypium hirsutum HOM05D007204 ORTHO05D008593 1.0e-17 94.7 175 38.3
CANSAT54G2573 Cannabis sativa HOM05D007204 ORTHO05D008593 2.9e-17 93.2 121 46.3
Sabra16G0175100 Salix brachista HOM05D007204 ORTHO05D008593 8.4e-17 91.7 144 40.3
Cfa011760 Carpinus fangiana HOM05D007204 ORTHO05D008593 1.1e-16 91.3 135 44.4
SEGI_02179 Sequoiadendron giganteum HOM05D056589 ORTHO05D008593 9.3e-16 88.2 210 32.4
Glyma.18G058101 Glycine max HOM05D007204 ORTHO05D008593 7.9e-15 85.1 118 42.4
unitig_94.g28350 Utricularia gibba HOM05D007204 ORTHO05D008593 1.3e-14 84.3 215 33.0
Nitab4.5_0009741g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 1.1e-13 81.3 283 28.3
Lalb_Chr15g0083171 Lupinus albus HOM05D007204 ORTHO05D008593 3.3e-13 79.7 129 38.0
SGA_v2.0_scaffold120G32948 Striga asiatica HOM05D007204 ORTHO05D008593 7.4e-13 78.6 142 36.6
ECA247G3086 Erigeron canadensis HOM05D007204 ORTHO05D008593 2.2e-12 77.0 141 36.2
Solyc06g082320.4 Solanum lycopersicum HOM05D007204 ORTHO05D008593 2.8e-12 76.6 84 48.8
CSS0017241 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 1.2e-10 71.2 105 38.1
CSS0041349 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 1.5e-10 70.9 105 38.1
SalBow2G2431 Salvia bowleyana HOM05D007204 ORTHO05D008593 1.4e-08 64.3 172 28.5
Sopen06g033710 Solanum pennellii HOM05D007204 ORTHO05D008593 1.4e-08 64.3 142 35.2


User provided reference genes

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