Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 4.9e-143 511.1 260 100.0
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 4.9e-143 511.1 260 100.0
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 1.8e-121 439.5 262 88.2
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 5.8e-120 434.5 262 88.5
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 7.3e-107 391.0 257 76.3
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 6.2e-106 387.9 258 75.6
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 5.8e-104 381.3 257 73.9
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 9.9e-104 380.6 259 74.9
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 2.2e-103 379.4 257 74.7
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 3.8e-103 378.6 259 75.7
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 3.8e-103 378.6 257 75.1
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 4.9e-103 378.3 257 73.9
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 6.4e-103 377.9 257 74.7
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 8.4e-103 377.5 257 75.9
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 8.4e-103 377.5 256 74.6
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 1.1e-102 377.1 257 73.9
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 1.1e-102 377.1 257 75.5
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.9e-102 376.3 257 74.7
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 3.2e-102 375.6 257 73.2
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 4.2e-102 375.2 257 73.5
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 4.2e-102 375.2 257 73.9
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 9.3e-102 374.0 257 72.8
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.6e-101 373.2 257 72.0
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 3.5e-101 372.1 257 73.5
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 4.6e-101 371.7 257 75.1
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 4.6e-101 371.7 257 72.0
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 6.0e-101 371.3 259 72.6
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 6.0e-101 371.3 257 72.8
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 6.0e-101 371.3 257 73.2
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 6.0e-101 371.3 257 73.2
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 7.8e-101 370.9 257 74.7
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 7.8e-101 370.9 257 73.2
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.7e-100 369.8 257 73.2
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 1.7e-100 369.8 257 73.2
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 1.7e-100 369.8 257 74.7
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 1.7e-100 369.8 257 72.8
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 1.7e-100 369.8 257 73.5
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 2.3e-100 369.4 257 73.9
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 3.0e-100 369.0 258 72.9
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 3.0e-100 369.0 257 74.7
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 3.9e-100 368.6 257 73.2
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 5.1e-100 368.2 257 73.2
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 1.5e-99 366.7 258 74.0
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 1.9e-99 366.3 252 73.4
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.3e-99 365.5 258 72.9
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 3.3e-99 365.5 257 72.4
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 3.3e-99 365.5 256 71.5
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 3.3e-99 365.5 256 73.0
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.3e-99 365.5 253 73.1
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.3e-99 365.2 258 72.5
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 4.3e-99 365.2 258 74.0
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 4.3e-99 365.2 259 73.0
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 5.6e-99 364.8 257 72.0
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 5.6e-99 364.8 257 72.0
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 5.6e-99 364.8 258 72.9
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.6e-98 363.2 258 71.7
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 1.6e-98 363.2 257 72.8
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 1.6e-98 363.2 257 72.4
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 2.8e-98 362.5 257 72.8
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 3.6e-98 362.1 257 72.0
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 8.1e-98 360.9 258 72.1
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 1.4e-97 360.1 257 73.5
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 2.4e-97 359.4 264 70.8
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 2.4e-97 359.4 257 71.6
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 3.1e-97 359.0 257 72.4
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 3.1e-97 359.0 258 71.3
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 5.3e-97 358.2 257 72.8
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 9.0e-97 357.5 258 73.6
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.2e-96 357.1 251 72.5
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.2e-96 357.1 257 71.6
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 2.6e-96 355.9 252 73.0
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 2.6e-96 355.9 262 69.5
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 3.4e-96 355.5 260 70.8
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 4.5e-96 355.1 257 70.8
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 7.6e-96 354.4 257 70.0
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 7.6e-96 354.4 257 69.6
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 9.9e-96 354.0 256 70.3
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 9.9e-96 354.0 258 72.1
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 2.2e-95 352.8 281 66.5
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 2.2e-95 352.8 265 71.3
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 2.9e-95 352.4 257 69.6
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 3.8e-95 352.1 259 69.5
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 3.8e-95 352.1 257 72.4
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 8.4e-95 350.9 257 71.2
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 3.2e-94 349.0 257 69.3
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 4.2e-94 348.6 272 69.1
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 5.4e-94 348.2 257 70.0
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 7.1e-94 347.8 258 69.4
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 9.3e-94 347.4 257 69.6
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 1.2e-93 347.1 258 70.2
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 1.6e-93 346.7 258 70.2
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.6e-93 346.7 256 70.3
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 2.7e-93 345.9 257 70.4
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.5e-93 345.5 256 71.1
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 6.0e-93 344.7 252 69.4
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 6.0e-93 344.7 258 70.9
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 7.9e-93 344.4 256 70.3
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.0e-92 344.0 257 69.6
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.3e-92 343.6 256 70.3
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 2.3e-92 342.8 259 69.5
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 5.6e-91 338.2 258 69.8
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 5.6e-91 338.2 252 69.4
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 1.6e-90 336.7 256 67.2
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.6e-90 336.7 253 70.0
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.6e-90 336.7 257 67.3
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 2.8e-90 335.9 299 60.5
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 1.4e-89 333.6 257 68.5
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 2.4e-89 332.8 257 67.7
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 5.3e-89 331.6 251 70.1
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 1.2e-88 330.5 261 67.4
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 2.6e-88 329.3 258 67.1
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 7.6e-88 327.8 228 71.9
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 1.7e-87 326.6 259 66.8
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 6.4e-87 324.7 310 58.4
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 1.9e-86 323.2 254 67.3
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 1.9e-86 323.2 284 62.3
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 5.5e-86 321.6 257 65.4
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 3.5e-85 318.9 257 65.4
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 7.9e-85 317.8 259 66.4
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 7.9e-85 317.8 259 65.6
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 7.9e-85 317.8 259 66.4
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 7.9e-85 317.8 259 65.6
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 1.0e-84 317.4 258 65.5
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 3.0e-84 315.8 259 66.0
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 5.1e-84 315.1 259 64.5
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 8.7e-84 314.3 258 64.3
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 8.7e-84 314.3 257 63.8
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 1.5e-83 313.5 256 66.8
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 3.3e-83 312.4 258 64.7
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 4.3e-83 312.0 229 71.2
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 4.3e-83 312.0 236 67.4
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 9.6e-83 310.8 258 64.3
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 2.8e-82 309.3 258 63.6
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 1.4e-81 307.0 278 62.2
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 1.5e-80 303.5 263 63.1
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 1.3e-79 300.4 238 64.7
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 3.8e-79 298.9 257 61.5
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 3.2e-78 295.8 257 63.0
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 7.9e-77 291.2 257 60.7
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 2.5e-75 286.2 258 59.3
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 5.7e-75 285.0 258 60.1
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 3.7e-74 282.3 209 71.3
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 2.4e-73 279.6 258 60.1
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 9.0e-73 277.7 243 61.7
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 2.0e-72 276.6 201 70.1
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 2.2e-71 273.1 258 59.3
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 4.2e-70 268.9 252 58.7
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 1.6e-69 266.9 200 68.5
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 2.1e-69 266.5 257 57.6
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 2.4e-65 253.1 199 66.3
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 8.8e-60 234.6 144 79.9
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.0e-52 209.5 165 64.8
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 2.2e-42 176.8 213 49.3
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 3.8e-39 166.0 150 56.7
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 4.2e-38 162.5 257 39.7
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 8.8e-36 154.8 234 42.3
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 2.3e-31 140.2 109 70.6
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 2.5e-30 136.7 254 37.8
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 2.1e-29 133.7 93 71.0
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 7.5e-27 125.2 74 86.5
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 7.5e-27 125.2 89 70.8
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 3.7e-26 122.9 113 58.4
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 1.6e-21 107.5 157 45.9
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 9.2e-17 91.7 118 44.1
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 5.2e-12 75.9 50 66.0
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 8.3e-10 68.6 123 40.7
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 1.9e-09 67.4 139 36.0
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 9.2e-09 65.1 40 72.5
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 2.1e-08 63.9 40 72.5
Zm00001eb092200 Zea mays HOM05D005147 ORTHO05D006132 2.1e-08 63.9 62 56.5
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 2.3e-07 60.5 86 37.2
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 5.6e-06 55.8 64 45.3


User provided reference genes

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