Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 0.0e+00 1369.4 722 100.0
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 0.0e+00 1148.3 719 84.0
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 6.6e-307 1057.0 687 78.0
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 5.6e-306 1053.9 688 77.0
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 2.3e-304 1048.5 687 77.3
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 8.9e-304 1046.6 692 76.7
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 5.8e-303 1043.9 692 76.6
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 5.8e-303 1043.9 693 77.1
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 2.2e-302 1042.0 687 76.9
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 2.9e-302 1041.6 683 76.9
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 1.4e-301 1039.3 691 77.6
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 2.4e-301 1038.5 686 77.4
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 3.2e-301 1038.1 700 75.1
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 4.1e-301 1037.7 686 76.7
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 9.2e-301 1036.6 692 76.4
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 1.2e-300 1036.2 688 76.3
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 1.6e-300 1035.8 691 77.3
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 2.7e-300 1035.0 689 77.1
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 2.7e-300 1035.0 689 77.1
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 3.5e-300 1034.6 689 76.9
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 4.6e-300 1034.2 687 75.8
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 6.0e-300 1033.9 689 76.8
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 6.0e-300 1033.9 689 76.8
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 6.0e-300 1033.9 689 76.8
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 7.8e-300 1033.5 694 76.2
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 1.0e-299 1033.1 687 76.3
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 1.0e-299 1033.1 687 76.6
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 3.9e-299 1031.2 691 75.5
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 3.9e-299 1031.2 688 75.7
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 3.9e-299 1031.2 687 76.1
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 5.1e-299 1030.8 686 76.5
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 5.1e-299 1030.8 693 76.0
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 8.6e-299 1030.0 690 75.5
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 1.1e-298 1029.6 691 77.0
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 1.1e-298 1029.6 692 76.3
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 1.5e-298 1029.2 692 75.6
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 1.5e-298 1029.2 685 75.2
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 2.5e-298 1028.5 687 75.5
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 3.3e-298 1028.1 688 75.7
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 3.3e-298 1028.1 710 74.2
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 4.3e-298 1027.7 693 76.6
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 9.5e-298 1026.5 685 75.0
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 9.5e-298 1026.5 689 76.1
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 9.5e-298 1026.5 687 75.7
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 9.5e-298 1026.5 693 75.5
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 1.2e-297 1026.2 692 75.6
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 1.6e-297 1025.8 688 75.3
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 1.6e-297 1025.8 712 74.6
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 8.1e-297 1023.5 685 75.0
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 4.0e-296 1021.1 692 74.9
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 6.8e-296 1020.4 688 75.1
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 8.9e-296 1020.0 699 75.0
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 1.5e-295 1019.2 701 74.9
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 2.0e-295 1018.8 685 75.0
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 2.6e-295 1018.5 689 74.3
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 2.6e-295 1018.5 700 74.7
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 3.4e-295 1018.1 695 75.1
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 4.4e-295 1017.7 686 74.6
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 7.6e-295 1016.9 691 75.8
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 7.6e-295 1016.9 687 75.4
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 7.6e-295 1016.9 687 75.5
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 9.9e-295 1016.5 693 75.8
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 4.9e-294 1014.2 721 72.8
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 1.4e-293 1012.7 687 74.7
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 2.4e-293 1011.9 689 74.9
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 5.4e-293 1010.7 689 74.6
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 7.1e-293 1010.4 692 74.3
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 1.6e-292 1009.2 690 74.6
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 2.1e-292 1008.8 687 74.1
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 7.8e-292 1006.9 686 74.2
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 1.3e-291 1006.1 689 74.5
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 1.3e-291 1006.1 689 74.5
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 1.3e-291 1006.1 689 74.5
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.3e-291 1006.1 691 74.8
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 8.7e-291 1003.4 687 74.1
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 1.2e-289 999.6 657 78.2
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 4.0e-288 994.6 699 74.1
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 1.5e-287 992.6 685 73.7
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 4.4e-287 991.1 661 76.6
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 8.4e-286 986.9 685 74.3
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 1.1e-285 986.5 699 73.7
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 1.4e-285 986.1 685 72.6
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 7.1e-285 983.8 692 73.8
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 8.7e-283 976.9 692 74.9
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 2.5e-282 975.3 691 73.5
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 3.3e-282 974.9 689 75.0
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 5.6e-282 974.2 693 72.9
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 5.6e-282 974.2 693 72.9
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 2.1e-281 972.2 689 73.3
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 3.4e-279 964.9 661 75.9
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 6.4e-278 960.7 677 72.8
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 3.3e-274 948.3 614 79.5
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.8e-273 945.3 721 69.1
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 6.9e-272 940.6 688 70.6
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 9.0e-272 940.3 656 74.5
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 2.9e-270 935.3 621 77.1
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 7.1e-269 930.6 692 70.5
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.7e-268 928.7 708 69.2
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 4.6e-268 927.9 689 69.5
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 6.9e-264 914.1 691 69.6
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 4.9e-262 907.9 691 70.0
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 2.7e-260 902.1 687 69.6
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 6.0e-260 901.0 586 78.8
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 1.4e-253 879.8 689 67.6
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 2.0e-247 859.4 542 80.4
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 9.4e-245 850.5 685 65.4
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 3.4e-239 832.0 556 75.9
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 6.5e-238 827.8 719 63.0
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 8.5e-238 827.4 534 81.1
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 3.1e-232 808.9 689 62.8
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.6e-226 789.3 562 71.5
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 4.7e-220 768.5 711 62.2
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 5.2e-219 765.0 687 62.9
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 2.0e-210 736.5 449 83.5
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 2.3e-206 723.0 512 73.0
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 2.1e-204 716.5 679 54.6
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 1.3e-193 680.6 613 57.3
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.5e-181 640.6 560 64.5
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.4e-179 634.0 403 81.1
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 4.0e-179 632.5 398 82.2
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 5.8e-178 628.6 614 58.5
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 6.4e-169 598.6 641 50.9
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 2.4e-160 570.1 653 48.1
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 7.9e-159 565.1 652 48.5
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 6.0e-151 538.9 518 58.5
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.4e-139 501.1 401 69.6
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.0e-137 495.0 635 42.2
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.4e-131 474.6 625 42.6
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.9e-129 466.8 626 42.0
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 8.2e-124 448.7 625 43.0
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 5.2e-110 402.9 245 83.3
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.0e-106 391.0 293 67.9
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 8.5e-105 385.6 397 52.1
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 8.8e-102 375.6 704 36.5
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.1e-88 332.0 399 51.9
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 3.7e-68 263.8 230 64.3
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 5.8e-61 240.0 198 56.1
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 3.5e-50 204.1 125 80.0
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.3e-49 201.4 171 67.3
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 4.8e-31 140.6 114 55.3
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 5.3e-30 137.1 78 85.9
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 6.1e-26 123.6 101 63.4
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 3.0e-25 121.3 63 87.3
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 1.6e-23 115.5 59 89.8
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 4.1e-22 110.9 56 98.2
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 1.2e-21 109.4 95 57.9
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 1.7e-07 62.4 63 54.0
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 3.1e-06 58.2 30 76.7


User provided reference genes

Program Settings