Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0561200 Oryza sativa ssp. japonica HOM05D005741 ORTHO05D007240 6.7e-301 1036.6 522 100.0
Zm00001eb023170 Zea mays HOM05D005741 ORTHO05D007240 4.5e-241 837.8 518 79.0
ATR0057G109 Amborella trichopoda HOM05D005741 ORTHO05D007240 3.8e-155 552.4 436 59.9
Eucgr.E00405 Eucalyptus grandis HOM05D005741 ORTHO05D007240 3.8e-155 552.4 504 55.6
CiPaw.11G082200 Carya illinoinensis HOM05D005741 ORTHO05D007240 2.1e-153 546.6 500 56.0
CANSAT21G0669 Cannabis sativa HOM05D005741 ORTHO05D007240 2.7e-153 546.2 437 60.2
Nn6g33867 Nelumbo nucifera HOM05D005741 ORTHO05D007240 4.4e-151 538.9 499 56.5
Haze_07941 Corylus avellana HOM05D005741 ORTHO05D007240 1.3e-150 537.3 483 56.3
Actinidia02155 Actinidia chinensis HOM05D005741 ORTHO05D007240 1.6e-148 530.4 500 54.6
Migut.A01137 Erythranthe guttata HOM05D005741 ORTHO05D007240 2.0e-148 530.0 504 53.0
PSO063G3551 Papaver somniferum HOM05D005741 ORTHO05D007240 4.5e-148 528.9 510 52.9
PSO782G4316 Papaver somniferum HOM05D005741 ORTHO05D007240 4.5e-148 528.9 510 52.4
Prupe.5G065000 Prunus persica HOM05D005741 ORTHO05D007240 4.5e-148 528.9 443 59.4
CSS0012403 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.3e-147 527.3 500 54.2
QL12p011266 Quercus lobata HOM05D005741 ORTHO05D007240 1.3e-147 527.3 499 53.3
Nitab4.5_0001381g0010 Nicotiana tabacum HOM05D005741 ORTHO05D007240 3.8e-147 525.8 443 59.4
Thecc.03G247800 Theobroma cacao HOM05D005741 ORTHO05D007240 3.8e-147 525.8 442 57.5
PGSC0003DMG400004829 Solanum tuberosum HOM05D005741 ORTHO05D007240 1.9e-146 523.5 498 54.2
Sabra03G0049500 Salix brachista HOM05D005741 ORTHO05D007240 3.2e-146 522.7 436 58.0
EL10Ac1g01729 Beta vulgaris HOM05D005741 ORTHO05D007240 9.4e-146 521.2 431 59.4
CAN.G1178.14 Capsicum annuum HOM05D005741 ORTHO05D007240 1.2e-145 520.8 446 58.1
Sopen08g026870 Solanum pennellii HOM05D005741 ORTHO05D007240 1.2e-145 520.8 494 53.6
Gohir.A09G196600 Gossypium hirsutum HOM05D005741 ORTHO05D007240 1.6e-145 520.4 436 57.8
CDE02G0403 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 2.1e-145 520.0 435 57.7
Gohir.D09G191200 Gossypium hirsutum HOM05D005741 ORTHO05D007240 2.7e-145 519.6 436 58.3
Solyc08g078380.3 Solanum lycopersicum HOM05D005741 ORTHO05D007240 4.7e-145 518.8 494 53.6
Nitab4.5_0003050g0020 Nicotiana tabacum HOM05D005741 ORTHO05D007240 1.8e-144 516.9 502 53.8
Gorai.006G214000 Gossypium raimondii HOM05D005741 ORTHO05D007240 2.3e-144 516.5 436 58.0
SEGI_37405 Sequoiadendron giganteum HOM05D005741 ORTHO05D007240 3.0e-144 516.2 436 56.4
Lj2A224T24 Lonicera japonica HOM05D005741 ORTHO05D007240 4.0e-144 515.8 500 53.2
GSVIVG01005817001 Vitis vinifera HOM05D005741 ORTHO05D007240 4.0e-144 515.8 496 53.4
CDE09G0915 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 5.2e-144 515.4 435 57.2
FvH4_5g19490 Fragaria vesca HOM05D005741 ORTHO05D007240 1.5e-143 513.8 478 55.4
Peaxi162Scf00214g00035 Petunia axillaris HOM05D005741 ORTHO05D007240 1.5e-143 513.8 432 58.3
Duzib084G1038 Durio zibethinus HOM05D005741 ORTHO05D007240 2.0e-143 513.5 440 56.8
Potri.003G079400 Populus trichocarpa HOM05D005741 ORTHO05D007240 2.6e-143 513.1 436 57.6
MD04G1060600 Malus domestica HOM05D005741 ORTHO05D007240 3.3e-143 512.7 505 53.9
RcHm_v2.0_Chr7g0204071 Rosa chinensis HOM05D005741 ORTHO05D007240 3.3e-143 512.7 499 54.7
FAN13G2335 Fragaria x ananassa HOM05D005741 ORTHO05D007240 5.7e-143 511.9 498 54.6
THA.LOC104806667 Tarenaya hassleriana HOM05D005741 ORTHO05D007240 5.7e-143 511.9 501 52.7
Duzib205G0633 Durio zibethinus HOM05D005741 ORTHO05D007240 7.5e-143 511.5 439 57.2
FAN18G1401 Fragaria x ananassa HOM05D005741 ORTHO05D007240 9.7e-143 511.1 478 55.2
Manes.01G083800 Manihot esculenta HOM05D005741 ORTHO05D007240 9.7e-143 511.1 480 54.0
FAN18G3259 Fragaria x ananassa HOM05D005741 ORTHO05D007240 2.8e-142 509.6 478 55.0
DCAR_008509 Daucus carota HOM05D005741 ORTHO05D007240 3.7e-142 509.2 499 53.1
arahy.Tifrunner.gnm1.ann1.F09Q1T Arachis hypogaea HOM05D005741 ORTHO05D007240 1.1e-141 507.7 440 55.7
Ciclev10019844m.g Citrus clementina HOM05D005741 ORTHO05D007240 9.1e-141 504.6 495 52.3
MELO3C005514.2 Cucumis melo HOM05D005741 ORTHO05D007240 9.1e-141 504.6 508 51.0
arahy.Tifrunner.gnm1.ann1.915X16 Arachis hypogaea HOM05D005741 ORTHO05D007240 1.2e-140 504.2 469 53.1
Atru.chr9.1271 Acer truncatum HOM05D005741 ORTHO05D007240 1.6e-140 503.8 496 52.2
BcaNung00094 Brassica carinata HOM05D005741 ORTHO05D007240 1.6e-140 503.8 499 52.9
C01p25020 Brassica napus HOM05D005741 ORTHO05D007240 2.0e-140 503.4 500 52.8
BolC1t02446H Brassica oleracea HOM05D005741 ORTHO05D007240 2.0e-140 503.4 500 52.8
Gorai.003G175200 Gossypium raimondii HOM05D005741 ORTHO05D007240 2.0e-140 503.4 442 55.2
Cc08_g12130 Coffea canephora HOM05D005741 ORTHO05D007240 5.9e-140 501.9 510 52.7
FAN08G2842 Fragaria x ananassa HOM05D005741 ORTHO05D007240 5.9e-140 501.9 496 53.8
Gohir.D03G165500 Gossypium hirsutum HOM05D005741 ORTHO05D007240 1.0e-139 501.1 445 55.1
CsaV3_5G004450 Cucumis sativus L. HOM05D005741 ORTHO05D007240 3.8e-139 499.2 447 54.1
FAN04G2833 Fragaria x ananassa HOM05D005741 ORTHO05D007240 3.8e-139 499.2 498 53.8
BraA01t01920Z Brassica rapa HOM05D005741 ORTHO05D007240 5.0e-139 498.8 500 52.4
BcaC09g50473 Brassica carinata HOM05D005741 ORTHO05D007240 1.1e-138 497.7 500 52.4
Ca_17300_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 1.5e-138 497.3 496 51.6
HanXRQChr16g0501101 Helianthus annuus HOM05D005741 ORTHO05D007240 5.5e-138 495.4 444 55.9
A01p19940 Brassica napus HOM05D005741 ORTHO05D007240 7.2e-138 495.0 500 52.4
Lalb_Chr07g0190101 Lupinus albus HOM05D005741 ORTHO05D007240 7.2e-138 495.0 447 54.6
Sc22g0001010 Simmondsia chinensis HOM05D005741 ORTHO05D007240 7.2e-138 495.0 442 56.1
Ca_17307_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 9.4e-138 494.6 432 56.5
TWI15G0579 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 9.4e-138 494.6 437 54.5
TPR.G32686 Trifolium pratense HOM05D005741 ORTHO05D007240 1.2e-137 494.2 445 53.9
CARHR224030 Cardamine hirsuta HOM05D005741 ORTHO05D007240 1.6e-137 493.8 499 50.5
Thhalv10024957m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 3.6e-137 492.7 499 50.3
Lsat_1_v5_gn_6_59361 Lactuca sativa HOM05D005741 ORTHO05D007240 3.6e-137 492.7 506 50.8
Psat7g009600 Pisum sativum HOM05D005741 ORTHO05D007240 4.7e-137 492.3 496 50.6
Phvul.004G038100 Phaseolus vulgaris HOM05D005741 ORTHO05D007240 1.0e-136 491.1 482 52.5
Aa31sc151G50 Aethionema arabicum HOM05D005741 ORTHO05D007240 1.4e-136 490.7 499 51.1
Aqoxy3G02814 Aquilegia oxysepala HOM05D005741 ORTHO05D007240 2.3e-136 490.0 467 52.7
COL.COLO4_37119 Corchorus olitorius HOM05D005741 ORTHO05D007240 2.3e-136 490.0 411 58.6
Glyma.13G055300 Glycine max HOM05D005741 ORTHO05D007240 3.0e-136 489.6 483 52.4
Medtr8g104850 Medicago truncatula HOM05D005741 ORTHO05D007240 3.0e-136 489.6 445 55.3
TWI81G0674 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 4.0e-136 489.2 483 50.5
vmacro00008 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 2.0e-135 486.9 560 48.2
Sed0015384 Sechium edule HOM05D005741 ORTHO05D007240 2.6e-135 486.5 498 50.0
VMungo0464G0479 Vigna mungo HOM05D005741 ORTHO05D007240 2.6e-135 486.5 481 52.8
TAR629G0196 Trochodendron aralioides HOM05D005741 ORTHO05D007240 3.4e-135 486.1 406 58.6
AT4G17430 Arabidopsis thaliana HOM05D005741 ORTHO05D007240 9.8e-135 484.6 499 50.7
Carub.0007s2399 Capsella rubella HOM05D005741 ORTHO05D007240 2.2e-134 483.4 506 50.2
Lj2g0010165 Lotus japonicus HOM05D005741 ORTHO05D007240 3.7e-134 482.6 491 51.9
AL7G37290 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 6.3e-134 481.9 500 50.6
SGA_v2.0_scaffold199G41222 Striga asiatica HOM05D005741 ORTHO05D007240 5.4e-133 478.8 542 48.3
Thhalv10000864m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 1.7e-131 473.8 498 49.8
SalBow5G2168 Salvia bowleyana HOM05D005741 ORTHO05D007240 3.8e-131 472.6 492 50.8
unitig_0.g1051 Utricularia gibba HOM05D005741 ORTHO05D007240 3.8e-131 472.6 527 46.3
AUR62042169 Chenopodium quinoa HOM05D005741 ORTHO05D007240 3.6e-129 466.1 406 56.2
Rhsim03G0144800 Rhododendron simsii HOM05D005741 ORTHO05D007240 1.0e-128 464.5 454 52.4
ClCG01G004250 Citrullus lanatus HOM05D005741 ORTHO05D007240 1.4e-128 464.2 498 49.0
AUR62022412 Chenopodium quinoa HOM05D005741 ORTHO05D007240 5.2e-128 462.2 406 56.7
PGR042G2173 Punica granatum HOM05D005741 ORTHO05D007240 2.2e-126 456.8 514 47.7
Hund20780 Selenicereus undatus HOM05D005741 ORTHO05D007240 1.6e-124 450.7 467 50.7
Hund30921 Selenicereus undatus HOM05D005741 ORTHO05D007240 3.5e-124 449.5 469 50.1
ECA233G5769 Erigeron canadensis HOM05D000263 ORTHO05D000213 2.4e-117 426.8 417 54.2
Gohir.A03G006700 Gossypium hirsutum HOM05D005741 ORTHO05D007240 4.3e-114 416.0 384 54.2
SHI07684 Sapria himalayana HOM05D005741 ORTHO05D007240 5.6e-114 415.6 434 50.5
TAR365G0013 Trochodendron aralioides HOM05D005741 ORTHO05D007240 5.2e-112 409.1 355 57.7
Oeu036348.1 Olea europaea HOM05D005741 ORTHO05D007240 5.4e-109 399.1 354 55.6
Dinv03497 Davidia involucrata HOM05D005741 ORTHO05D007240 3.6e-105 386.3 355 54.6
CSS0035552 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 2.3e-104 383.6 349 54.2
Hma1.2p1_1136F.1_g260550 Hydrangea macrophylla HOM05D005741 ORTHO05D007240 9.9e-103 378.3 354 52.8
AagrBONN_evm.TU.Sc2ySwM_228.4051__4052 Anthoceros agrestis HOM05D005741 ORTHO05D007240 1.3e-99 367.9 499 42.3
Cc11_g11020 Coffea canephora HOM05D005741 ORTHO05D007240 4.0e-96 356.3 285 60.0
SMO358G0726 Selaginella moellendorffii HOM05D005741 ORTHO05D007240 2.8e-89 333.6 430 41.9
Mapoly0027s0023 Marchantia polymorpha HOM05D005741 ORTHO05D007240 7.6e-79 298.9 462 39.0
Dinv39172 Davidia involucrata HOM05D005741 ORTHO05D007240 1.4e-77 294.7 231 60.6
QL05p056282 Quercus lobata HOM05D005741 ORTHO05D007240 2.1e-73 280.8 405 39.5
MD06G1054000 Malus domestica HOM05D005741 ORTHO05D007240 7.9e-68 262.3 213 60.1
QL05p056380 Quercus lobata HOM05D005741 ORTHO05D007240 3.3e-66 256.9 254 52.0
QL05p056241 Quercus lobata HOM05D005741 ORTHO05D007240 2.1e-60 237.7 259 50.2
Aa31LG6G180 Aethionema arabicum HOM05D005741 ORTHO05D007240 1.8e-59 234.6 234 50.4
Mapoly0048s0017 Marchantia polymorpha HOM05D005741 ORTHO05D007240 3.4e-55 220.3 463 32.6
Lj1g0021170 Lotus japonicus HOM05D005741 ORTHO05D007240 7.2e-53 212.6 418 34.7
Glyma.19G032167 Glycine max HOM05D005741 ORTHO05D007240 3.4e-47 193.7 184 53.8
CSS0043083 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 3.3e-42 177.2 165 53.3
Sed0012710 Sechium edule HOM05D005741 ORTHO05D007240 1.3e-41 175.3 210 44.8
Pp3c6_17590 Physcomitrium patens HOM05D005741 ORTHO05D007240 2.2e-38 164.5 311 32.5
vmacro00009 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 6.7e-35 152.9 198 44.4
Glyma.19G032233 Glycine max HOM05D005741 ORTHO05D007240 4.5e-31 140.2 116 54.3
vmacro00011 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 1.1e-29 135.6 277 35.4
CSS0007358 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.8e-27 128.3 111 54.1
CSS0008948 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.8e-27 128.3 110 54.5
CSS0012087 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 4.0e-27 127.1 111 53.2
Actinidia14404 Actinidia chinensis HOM05D005741 ORTHO05D007240 3.6e-20 104.0 132 40.9
Oeu057691.1 Olea europaea HOM05D005741 ORTHO05D007240 3.0e-19 100.9 74 62.2
Pp3c6_17579 Physcomitrium patens HOM05D005741 ORTHO05D007240 5.7e-18 96.7 80 56.2
Aa31LG6G170 Aethionema arabicum HOM05D005741 ORTHO05D007240 9.5e-13 79.3 116 37.9
Hma1.2p1_2773F.1_g328260 Hydrangea macrophylla HOM05D005741 ORTHO05D228475 1.7e-09 68.6 75 45.3
AL7G37230 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 1.4e-08 65.5 43 60.5


User provided reference genes

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