Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 7.4e-195 683.7 352 100.0
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 8.0e-165 583.9 360 83.6
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 1.4e-148 530.0 342 80.7
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 3.5e-96 355.9 369 51.5
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 8.7e-95 351.3 373 49.6
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 2.4e-92 343.2 368 48.6
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.1e-92 342.8 365 50.4
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 3.4e-91 339.3 365 51.0
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 7.6e-91 338.2 365 49.9
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.0e-90 337.8 365 49.9
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.0e-90 337.8 365 49.9
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.3e-90 337.4 365 49.6
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 1.3e-90 337.4 374 48.1
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.7e-90 337.0 365 49.6
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 6.5e-90 335.1 365 50.1
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 8.4e-90 334.7 374 49.2
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 1.1e-89 334.3 373 48.3
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 1.1e-89 334.3 378 48.9
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 1.4e-89 334.0 368 49.2
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 3.2e-89 332.8 368 48.9
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 7.1e-89 331.6 372 49.2
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 1.2e-88 330.9 374 47.6
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 1.6e-88 330.5 377 47.7
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 2.7e-88 329.7 374 47.3
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 2.7e-88 329.7 376 47.3
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 7.9e-88 328.2 382 47.9
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 2.3e-87 326.6 354 51.1
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 8.7e-87 324.7 376 47.3
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 1.5e-86 323.9 364 48.6
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 2.5e-86 323.2 370 46.5
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 3.3e-86 322.8 381 47.2
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 4.3e-86 322.4 366 48.1
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 5.7e-86 322.0 370 47.6
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 5.7e-86 322.0 370 46.2
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 1.3e-85 320.9 366 48.1
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 1.6e-85 320.5 378 46.8
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 1.6e-85 320.5 384 47.1
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 2.1e-85 320.1 365 46.8
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 2.1e-85 320.1 378 47.4
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 3.7e-85 319.3 370 45.9
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 6.3e-85 318.5 369 45.8
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 6.3e-85 318.5 364 47.8
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 1.8e-84 317.0 369 46.6
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 3.1e-84 316.2 371 46.1
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 4.1e-84 315.8 379 45.6
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 4.1e-84 315.8 371 46.9
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 5.3e-84 315.5 367 46.0
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 9.0e-84 314.7 371 46.6
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 9.0e-84 314.7 361 48.2
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 9.0e-84 314.7 357 49.0
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 1.2e-83 314.3 366 48.4
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 4.5e-83 312.4 374 46.8
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 4.5e-83 312.4 374 46.0
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 1.0e-82 311.2 366 48.1
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 1.7e-82 310.5 373 45.6
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 2.9e-82 309.7 369 48.0
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 2.9e-82 309.7 367 45.8
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 3.8e-82 309.3 366 47.8
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 1.1e-81 307.8 369 45.8
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 1.9e-81 307.0 376 46.0
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 2.5e-81 306.6 380 44.7
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 4.2e-81 305.8 383 43.3
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 5.5e-81 305.4 383 43.3
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 5.5e-81 305.4 376 44.7
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 7.2e-81 305.1 383 43.1
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 7.2e-81 305.1 366 47.0
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 9.3e-81 304.7 374 47.1
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.2e-80 304.3 374 46.3
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 1.6e-80 303.9 373 45.0
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 2.1e-80 303.5 383 45.2
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 2.7e-80 303.1 369 46.9
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 3.5e-80 302.8 370 47.8
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 6.1e-80 302.0 371 46.4
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 1.0e-79 301.2 382 44.8
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 2.3e-79 300.1 377 45.6
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 8.7e-79 298.1 367 46.9
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 1.1e-78 297.7 370 45.7
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 1.9e-78 297.0 348 47.1
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 2.5e-78 296.6 370 44.9
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 4.3e-78 295.8 365 44.9
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 5.7e-78 295.4 370 44.9
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 1.3e-77 294.3 366 44.8
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.6e-77 293.9 370 44.6
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 4.8e-77 292.4 381 44.1
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 6.3e-77 292.0 381 44.1
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 6.3e-77 292.0 380 43.7
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 8.2e-77 291.6 458 40.0
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 1.1e-76 291.2 368 44.6
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 1.1e-76 291.2 366 44.8
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 1.4e-76 290.8 381 43.8
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 1.4e-76 290.8 370 44.1
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 1.8e-76 290.4 355 45.6
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 3.1e-76 289.7 382 43.7
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 4.1e-76 289.3 357 45.7
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 9.0e-76 288.1 372 42.5
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 1.2e-75 287.7 385 43.1
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 2.0e-75 287.0 365 44.7
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 2.6e-75 286.6 346 44.8
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 3.4e-75 286.2 371 44.7
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 1.3e-74 284.3 364 44.2
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 8.5e-74 281.6 358 42.2
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.1e-73 281.2 370 41.9
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 3.2e-73 279.6 370 41.6
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.2e-73 279.3 356 43.3
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 9.4e-73 278.1 370 41.4
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 4.6e-72 275.8 363 44.6
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 6.7e-71 271.9 288 49.3
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 2.8e-69 266.5 330 44.5
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 2.8e-69 266.5 330 44.5
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 5.9e-67 258.8 374 39.3
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 1.1e-65 254.6 354 42.4
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 7.9e-64 248.4 379 40.4
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 2.0e-59 233.8 352 40.1
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 6.5e-58 228.8 195 55.4
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 4.2e-57 226.1 265 45.7
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 1.4e-52 211.1 366 35.5
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 7.0e-52 208.8 339 38.6
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 2.1e-48 197.2 329 34.7
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 9.8e-46 188.3 191 50.8
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 3.5e-43 179.9 233 46.4
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 2.7e-40 170.2 267 37.1
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 4.4e-38 162.9 272 37.5
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 9.8e-38 161.8 185 44.9
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 8.0e-32 142.1 287 30.3
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 6.8e-31 139.0 176 47.2
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 7.8e-27 125.6 305 29.8
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 5.2e-23 112.8 124 46.8
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 6.8e-23 112.5 124 47.6
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 1.1e-20 105.1 107 49.5
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 1.9e-20 104.4 152 38.2
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.0e-18 98.6 106 50.0
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 2.3e-18 97.4 150 36.0
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 1.7e-13 81.3 80 46.2
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 1.1e-12 78.6 80 46.2
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 1.1e-12 78.6 110 40.9
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.9e-12 77.8 80 45.0
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 6.0e-11 72.8 80 41.2
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 6.0e-11 72.8 223 29.6
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 5.1e-10 69.7 90 40.0
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 2.5e-09 67.4 42 76.2
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 2.5e-09 67.4 65 52.3
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 4.3e-09 66.6 59 55.9
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 3.6e-08 63.5 65 49.2
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 6.2e-08 62.8 53 62.3
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.4e-07 61.6 45 62.2
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.4e-07 61.6 45 62.2
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 8.9e-07 58.9 64 43.8


User provided reference genes

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