Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0532150 Oryza sativa ssp. japonica HOM05D000461 ORTHO05D006079 2.6e-138 495.4 249 100.0
Zm00001eb021760 Zea mays HOM05D000461 ORTHO05D006079 1.2e-90 337.0 242 70.7
Nn5g29246 Nelumbo nucifera HOM05D000461 ORTHO05D006079 3.5e-58 229.2 256 50.0
HPP92_014427 Vanilla planifolia HOM05D000461 ORTHO05D006079 1.9e-56 223.4 254 46.9
Dinv31816 Davidia involucrata HOM05D000461 ORTHO05D006079 2.1e-55 219.9 255 49.4
vmacro04330 Vaccinium macrocarpon HOM05D000461 ORTHO05D006079 1.1e-54 217.6 250 49.6
Aqoxy5G02511 Aquilegia oxysepala HOM05D000461 ORTHO05D006079 1.8e-54 216.9 255 48.2
Actinidia15394 Actinidia chinensis HOM05D000461 ORTHO05D006079 2.4e-54 216.5 256 48.4
QL02p010828 Quercus lobata HOM05D000461 ORTHO05D006079 9.0e-54 214.5 255 50.2
Actinidia22491 Actinidia chinensis HOM05D000461 ORTHO05D006079 1.5e-53 213.8 252 48.4
AUR62014416 Chenopodium quinoa HOM05D000461 ORTHO05D006079 2.0e-53 213.4 253 47.0
Potri.002G027100 Populus trichocarpa HOM05D000461 ORTHO05D006079 3.4e-53 212.6 255 49.0
CAN.G851.3 Capsicum annuum HOM05D000461 ORTHO05D006079 4.5e-53 212.2 255 47.1
AUR62019152 Chenopodium quinoa HOM05D000461 ORTHO05D006079 7.6e-53 211.5 253 46.6
Cpa.g.sc140.26 Carica papaya HOM05D000461 ORTHO05D006079 9.9e-53 211.1 259 47.5
Rhsim07G0244900 Rhododendron simsii HOM05D000461 ORTHO05D006079 9.9e-53 211.1 247 49.0
Atru.chr13.348 Acer truncatum HOM05D000461 ORTHO05D006079 1.3e-52 210.7 252 46.8
EL10Ac1g00444 Beta vulgaris HOM05D000461 ORTHO05D006079 1.3e-52 210.7 254 46.9
Ah.05g171870 Amaranthus hybridus HOM05D000461 ORTHO05D006079 2.9e-52 209.5 254 45.7
PGSC0003DMG402003767 Solanum tuberosum HOM05D000461 ORTHO05D006079 2.9e-52 209.5 255 47.5
CSS0018046 Camellia sinensis var. sinensis HOM05D000461 ORTHO05D006079 4.9e-52 208.8 254 48.4
CSS0028400 Camellia sinensis var. sinensis HOM05D000461 ORTHO05D006079 4.9e-52 208.8 248 48.8
Solyc04g081100.3 Solanum lycopersicum HOM05D000461 ORTHO05D006079 4.9e-52 208.8 256 46.9
Ciclev10000011m.g Citrus clementina HOM05D000461 ORTHO05D006079 6.4e-52 208.4 246 48.0
Prupe.1G370000 Prunus persica HOM05D000461 ORTHO05D006079 6.4e-52 208.4 252 48.0
Haze_22598 Corylus avellana HOM05D000461 ORTHO05D006079 1.1e-51 207.6 256 47.3
Aqoxy6G02345 Aquilegia oxysepala HOM05D000461 ORTHO05D006079 1.9e-51 206.8 255 46.7
Nn6g32259 Nelumbo nucifera HOM05D000461 ORTHO05D006079 2.4e-51 206.5 260 46.2
ATR0149G010 Amborella trichopoda HOM05D000461 ORTHO05D006079 5.5e-51 205.3 263 44.1
Lj5g0007621 Lotus japonicus HOM05D000461 ORTHO05D006079 5.5e-51 205.3 244 47.5
Peaxi162Scf00287g00141 Petunia axillaris HOM05D000461 ORTHO05D006079 5.5e-51 205.3 255 45.9
Sopen04g034720 Solanum pennellii HOM05D000461 ORTHO05D006079 5.5e-51 205.3 255 46.3
TPR.G34342 Trifolium pratense HOM05D000461 ORTHO05D006079 1.2e-50 204.1 263 46.8
CiPaw.08G063400 Carya illinoinensis HOM05D000461 ORTHO05D006079 1.6e-50 203.8 251 47.0
ECA232G1887 Erigeron canadensis HOM05D000461 ORTHO05D006079 2.1e-50 203.4 261 45.2
Migut.C00798 Erythranthe guttata HOM05D000461 ORTHO05D006079 2.1e-50 203.4 253 48.2
MD08G1017300 Malus domestica HOM05D000461 ORTHO05D006079 2.1e-50 203.4 252 48.4
MD15G1016200 Malus domestica HOM05D000461 ORTHO05D006079 6.0e-50 201.8 252 47.6
TAR625G0186 Trochodendron aralioides HOM05D000461 ORTHO05D006079 6.0e-50 201.8 255 46.7
Medtr1g023510 Medicago truncatula HOM05D000461 ORTHO05D006079 7.9e-50 201.4 246 46.7
Psat6g005040 Pisum sativum HOM05D000461 ORTHO05D006079 7.9e-50 201.4 247 48.2
Cfa013913 Carpinus fangiana HOM05D000461 ORTHO05D006079 1.0e-49 201.1 250 46.8
FAN20G0079 Fragaria x ananassa HOM05D000461 ORTHO05D006079 1.3e-49 200.7 252 46.8
Lalb_Chr14g0369711 Lupinus albus HOM05D000461 ORTHO05D006079 1.3e-49 200.7 248 47.6
Manes.18G016800 Manihot esculenta HOM05D000461 ORTHO05D006079 1.3e-49 200.7 255 46.7
Glyma.14G216900 Glycine max HOM05D000461 ORTHO05D006079 3.0e-49 199.5 245 47.3
Sabra05G0181600 Salix brachista HOM05D000461 ORTHO05D006079 3.0e-49 199.5 255 47.5
TAR381G1498 Trochodendron aralioides HOM05D000461 ORTHO05D006079 3.0e-49 199.5 242 47.9
FvH4_2g39110 Fragaria vesca HOM05D000461 ORTHO05D006079 3.9e-49 199.1 252 46.8
Glyma.17G255500 Glycine max HOM05D000461 ORTHO05D006079 3.9e-49 199.1 245 47.3
Lj1g0004463 Lotus japonicus HOM05D000461 ORTHO05D006079 3.9e-49 199.1 245 48.2
RcHm_v2.0_Chr6g0302221 Rosa chinensis HOM05D000461 ORTHO05D006079 3.9e-49 199.1 252 46.8
FAN27G0733 Fragaria x ananassa HOM05D000461 ORTHO05D006079 5.1e-49 198.7 252 46.8
Potri.005G235400 Populus trichocarpa HOM05D000461 ORTHO05D006079 6.7e-49 198.4 255 48.6
MSTRG.1217 Avicennia marina HOM05D000461 ORTHO05D006079 1.9e-48 196.8 262 45.0
FAN15G1130 Fragaria x ananassa HOM05D000461 ORTHO05D006079 1.9e-48 196.8 252 46.4
COL.COLO4_26189 Corchorus olitorius HOM05D000461 ORTHO05D006079 4.3e-48 195.7 254 47.2
Phvul.001G009300 Phaseolus vulgaris HOM05D000461 ORTHO05D006079 4.3e-48 195.7 255 45.5
Sabra02G0021300 Salix brachista HOM05D000461 ORTHO05D006079 4.3e-48 195.7 297 42.4
Manes.05G151700 Manihot esculenta HOM05D000461 ORTHO05D006079 5.6e-48 195.3 255 45.9
PSO541G0357 Papaver somniferum HOM05D000461 ORTHO05D006079 5.6e-48 195.3 255 44.3
SalBow7G3342 Salvia bowleyana HOM05D000461 ORTHO05D006079 5.6e-48 195.3 256 46.5
Duzib116G0720 Durio zibethinus HOM05D000461 ORTHO05D006079 9.6e-48 194.5 235 48.9
HanXRQChr16g0501691 Helianthus annuus HOM05D000461 ORTHO05D006079 9.6e-48 194.5 261 45.2
Thecc.08G038400 Theobroma cacao HOM05D000461 ORTHO05D006079 9.6e-48 194.5 242 46.7
Dinv39493 Davidia involucrata HOM05D000461 ORTHO05D006079 1.3e-47 194.1 240 48.3
PSO675G7473 Papaver somniferum HOM05D000461 ORTHO05D006079 1.3e-47 194.1 255 43.9
ClCG08G014460 Citrullus lanatus HOM05D000461 ORTHO05D006079 1.6e-47 193.7 251 45.0
TWI56G0448 Tripterygium wilfordii HOM05D000461 ORTHO05D006079 2.1e-47 193.4 254 43.7
MELO3C010993.2 Cucumis melo HOM05D000461 ORTHO05D006079 2.8e-47 193.0 251 45.4
CsaV3_2G029330 Cucumis sativus L. HOM05D000461 ORTHO05D006079 2.8e-47 193.0 251 44.6
Medtr3g113170 Medicago truncatula HOM05D000461 ORTHO05D006079 2.8e-47 193.0 247 44.9
Lj4C791T6 Lonicera japonica HOM05D000461 ORTHO05D006079 3.7e-47 192.6 253 46.6
CARHR222680 Cardamine hirsuta HOM05D000461 ORTHO05D006079 6.2e-47 191.8 259 45.6
Carub.0007s2522 Capsella rubella HOM05D000461 ORTHO05D006079 1.1e-46 191.0 262 44.3
Oeu046249.2 Olea europaea HOM05D000461 ORTHO05D006079 1.4e-46 190.7 245 45.7
Gohir.D04G041600 Gossypium hirsutum HOM05D000461 ORTHO05D006079 1.8e-46 190.3 234 47.0
Sp7g14830 Schrenkiella parvula HOM05D000461 ORTHO05D006079 1.8e-46 190.3 259 45.2
Cc10_g02020 Coffea canephora HOM05D000461 ORTHO05D006079 3.1e-46 189.5 253 44.7
Duzib041G0375 Durio zibethinus HOM05D000461 ORTHO05D006079 3.1e-46 189.5 238 47.5
Gorai.012G046900 Gossypium raimondii HOM05D000461 ORTHO05D006079 3.1e-46 189.5 232 47.0
Gohir.A05G373900 Gossypium hirsutum HOM05D000461 ORTHO05D006079 9.0e-46 188.0 234 46.6
Sed0010278 Sechium edule HOM05D000461 ORTHO05D006079 1.2e-45 187.6 252 43.3
Sed0013065 Sechium edule HOM05D000461 ORTHO05D006079 1.2e-45 187.6 251 43.8
arahy.Tifrunner.gnm1.ann1.26R1CG Arachis hypogaea HOM05D000461 ORTHO05D006079 1.5e-45 187.2 234 46.2
arahy.Tifrunner.gnm1.ann1.VSCY1A Arachis hypogaea HOM05D000461 ORTHO05D006079 1.5e-45 187.2 234 46.2
A08p12280 Brassica napus HOM05D000461 ORTHO05D006079 2.0e-45 186.8 255 45.1
BolC8t48358H Brassica oleracea HOM05D000461 ORTHO05D006079 2.0e-45 186.8 255 45.1
BraA08t33230Z Brassica rapa HOM05D000461 ORTHO05D006079 2.0e-45 186.8 255 45.1
Thhalv10024204m.g Eutrema salsugineum HOM05D000461 ORTHO05D006079 4.5e-45 185.7 261 45.6
Psat5g014880 Pisum sativum HOM05D000461 ORTHO05D006079 4.5e-45 185.7 255 45.1
Lalb_Chr22g0354441 Lupinus albus HOM05D000461 ORTHO05D006079 7.6e-45 184.9 246 46.7
Aa31sc185G80 Aethionema arabicum HOM05D000461 ORTHO05D006079 1.0e-44 184.5 259 43.6
Gohir.A03G080700 Gossypium hirsutum HOM05D000461 ORTHO05D006079 1.0e-44 184.5 237 46.0
BcaB04g18377 Brassica carinata HOM05D000461 ORTHO05D006079 1.3e-44 184.1 255 44.3
BcaC07g37977 Brassica carinata HOM05D000461 ORTHO05D006079 1.3e-44 184.1 255 44.7
Gorai.005G110900 Gossypium raimondii HOM05D000461 ORTHO05D006079 1.7e-44 183.7 232 46.6
Gohir.D02G097300 Gossypium hirsutum HOM05D000461 ORTHO05D006079 3.8e-44 182.6 237 46.0
HanXRQChr09g0269691 Helianthus annuus HOM05D000461 ORTHO05D006079 8.4e-44 181.4 264 43.6
AL7G38730 Arabidopsis lyrata HOM05D000461 ORTHO05D006079 1.9e-43 180.3 259 43.6
Hund26862 Selenicereus undatus HOM05D000461 ORTHO05D006079 2.5e-43 179.9 236 45.3
VMungo0647G1359 Vigna mungo HOM05D000461 ORTHO05D006079 4.2e-43 179.1 234 45.3
CDE04G0128 Ceratophyllum demersum HOM05D002948 ORTHO05D006079 5.5e-43 178.7 227 45.4
DCAR_009940 Daucus carota HOM05D000461 ORTHO05D006079 7.1e-43 178.3 211 51.2
AT4G16310 Arabidopsis thaliana HOM05D000461 ORTHO05D006079 1.6e-42 177.2 259 43.2
Lsat_1_v5_gn_4_115701 Lactuca sativa HOM05D000461 ORTHO05D006079 1.0e-41 174.5 259 44.0
SGA_v2.0_scaffold92G28283 Striga asiatica HOM05D000461 ORTHO05D006079 5.1e-41 172.2 243 44.4
MBI05_g16278_MAGBIO Magnolia biondii HOM05D000461 ORTHO05D006079 9.7e-40 167.9 214 44.9
SGA_v2.0_scaffold11G05881 Striga asiatica HOM05D000461 ORTHO05D006079 2.8e-39 166.4 246 41.5
PGR083G1208 Punica granatum HOM05D000461 ORTHO05D006079 6.9e-38 161.8 233 42.5
Nitab4.5_0005567g0020 Nicotiana tabacum HOM05D000461 ORTHO05D006079 1.5e-37 160.6 254 40.2
Sc26g0003210 Simmondsia chinensis HOM05D000461 ORTHO05D006079 1.3e-36 157.5 216 45.4
DCAR_022441 Daucus carota HOM05D000461 ORTHO05D006079 2.9e-36 156.4 212 42.9
DCAR_022442 Daucus carota HOM05D000461 ORTHO05D006079 6.5e-36 155.2 212 42.5
MSTRG.9637 Avicennia marina HOM05D000461 ORTHO05D006079 2.2e-31 140.2 179 45.8
unitig_8.g4920 Utricularia gibba HOM05D000461 ORTHO05D006079 1.5e-29 134.0 216 41.7
SEGI_05511 Sequoiadendron giganteum HOM05D000461 ORTHO05D006079 5.9e-29 132.1 264 33.7
vmacro04331 Vaccinium macrocarpon HOM05D000461 ORTHO05D006079 8.5e-28 128.3 178 43.8
CDE02G3594 Ceratophyllum demersum HOM05D000461 ORTHO05D006079 1.4e-25 120.9 167 40.7
GSVIVG01009833001 Vitis vinifera HOM05D000461 ORTHO05D006079 2.3e-25 120.2 209 37.8
FAN20G0728 Fragaria x ananassa HOM05D000461 ORTHO05D006079 1.4e-19 100.9 151 41.1
MD15G1018400 Malus domestica HOM05D000461 ORTHO05D006079 3.2e-19 99.8 178 42.1
AagrBONN_evm.TU.Sc2ySwM_228.3665 Anthoceros agrestis HOM05D000461 ORTHO05D006079 8.0e-10 68.6 93 35.5
Pp3c1_6380 Physcomitrium patens HOM05D000461 ORTHO05D006079 1.4e-09 67.8 79 35.4
Pp3c1_6385 Physcomitrium patens HOM05D000461 ORTHO05D006079 1.4e-09 67.8 79 35.4
Pp3c1_1170 Physcomitrium patens HOM05D000461 ORTHO05D006079 1.8e-09 67.4 85 32.9
Pp3c2_35433 Physcomitrium patens HOM05D000461 ORTHO05D006079 2.3e-09 67.0 90 32.2
Pp3c2_35520 Physcomitrium patens HOM05D000461 ORTHO05D006079 2.0e-08 63.9 90 30.0
SMO356G0625 Selaginella moellendorffii HOM05D000461 ORTHO05D006079 1.7e-07 60.8 76 31.6


User provided reference genes

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