Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0500400 Oryza sativa ssp. japonica HOM05D007014 ORTHO05D008894 7.3e-74 280.8 178 100.0
Zm00001eb044470 Zea mays HOM05D007014 ORTHO05D008894 2.4e-53 212.6 175 66.3
Zm00001eb044400 Zea mays HOM05D007014 ORTHO05D008894 2.1e-52 209.5 175 65.7
Rhsim04G0068000 Rhododendron simsii HOM05D007014 ORTHO05D008894 6.9e-40 167.9 165 53.3
Potri.013G134102 Populus trichocarpa HOM05D007014 ORTHO05D008894 1.0e-38 164.1 164 52.4
Potri.013G134000 Populus trichocarpa HOM05D007014 ORTHO05D008894 1.7e-38 163.3 164 52.4
Sabra13G0113800 Salix brachista HOM05D007014 ORTHO05D008894 1.7e-38 163.3 164 52.4
Dinv02170 Davidia involucrata HOM05D007014 ORTHO05D008894 3.8e-38 162.2 164 53.7
vmacro09278 Vaccinium macrocarpon HOM05D007014 ORTHO05D008894 4.9e-38 161.8 164 51.2
HanXRQChr17g0553541 Helianthus annuus HOM05D007014 ORTHO05D008894 6.5e-38 161.4 166 50.0
Haze_13147 Corylus avellana HOM05D007014 ORTHO05D008894 8.4e-38 161.0 153 53.6
Thhalv10008981m.g Eutrema salsugineum HOM05D007014 ORTHO05D008894 1.1e-37 160.6 164 53.7
CSS0024097 Camellia sinensis var. sinensis HOM05D007014 ORTHO05D008894 1.9e-37 159.8 164 51.8
Carub.0001s0276 Capsella rubella HOM05D007014 ORTHO05D008894 2.5e-37 159.5 164 53.0
AL1G13150 Arabidopsis lyrata HOM05D007014 ORTHO05D008894 3.2e-37 159.1 164 53.0
BcaC07g42241 Brassica carinata HOM05D007014 ORTHO05D008894 3.2e-37 159.1 164 53.7
Cfa014594 Carpinus fangiana HOM05D007014 ORTHO05D008894 3.2e-37 159.1 164 51.8
COL.COLO4_07554 Corchorus olitorius HOM05D007014 ORTHO05D008894 3.2e-37 159.1 164 51.2
CAN.G486.11 Capsicum annuum HOM05D007014 ORTHO05D008894 5.5e-37 158.3 164 51.8
THA.LOC104801176 Tarenaya hassleriana HOM05D007014 ORTHO05D008894 7.1e-37 157.9 165 52.1
CARHR002980 Cardamine hirsuta HOM05D007014 ORTHO05D008894 9.3e-37 157.5 164 53.0
Sed0017748 Sechium edule HOM05D007014 ORTHO05D008894 9.3e-37 157.5 166 50.0
AT1G03650 Arabidopsis thaliana HOM05D007014 ORTHO05D008894 1.2e-36 157.1 164 52.4
Lj8A113T47 Lonicera japonica HOM05D007014 ORTHO05D008894 1.6e-36 156.8 152 55.3
Nitab4.5_0003022g0100 Nicotiana tabacum HOM05D007014 ORTHO05D008894 2.1e-36 156.4 164 50.6
Sp1g02550 Schrenkiella parvula HOM05D007014 ORTHO05D008894 2.1e-36 156.4 164 51.8
Thecc.02G177900 Theobroma cacao HOM05D007014 ORTHO05D008894 2.1e-36 156.4 152 53.9
PGSC0003DMG400007868 Solanum tuberosum HOM05D007014 ORTHO05D008894 3.5e-36 155.6 166 51.8
Hma1.2p1_1201F.1_g266700 Hydrangea macrophylla HOM05D007014 ORTHO05D008894 4.6e-36 155.2 152 54.6
unitig_21.g20401 Utricularia gibba HOM05D007014 ORTHO05D008894 4.6e-36 155.2 165 50.9
Peaxi162Scf02133g00022 Petunia axillaris HOM05D007014 ORTHO05D008894 7.9e-36 154.5 164 50.0
ClCG02G017580 Citrullus lanatus HOM05D007014 ORTHO05D008894 1.0e-35 154.1 166 50.0
Gohir.D13G066000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 1.0e-35 154.1 168 49.4
Gorai.013G075300 Gossypium raimondii HOM05D007014 ORTHO05D008894 1.0e-35 154.1 168 49.4
PGSC0003DMG400007866 Solanum tuberosum HOM05D007014 ORTHO05D008894 1.0e-35 154.1 166 51.2
BcaC07g42236 Brassica carinata HOM05D007014 ORTHO05D008894 1.3e-35 153.7 152 54.6
GSVIVG01030373001 Vitis vinifera HOM05D007014 ORTHO05D008894 1.3e-35 153.7 164 50.0
Nn1g06593 Nelumbo nucifera HOM05D007014 ORTHO05D008894 2.3e-35 152.9 169 48.5
TPR.G21768 Trifolium pratense HOM05D007014 ORTHO05D008894 2.3e-35 152.9 164 51.2
MBI17_g43194_MAGBIO Magnolia biondii HOM05D007014 ORTHO05D008894 3.9e-35 152.1 160 48.8
Aa31LG1G20970 Aethionema arabicum HOM05D007014 ORTHO05D008894 5.1e-35 151.8 164 50.0
Oeu029922.1 Olea europaea HOM05D007014 ORTHO05D008894 5.1e-35 151.8 164 48.8
MELO3C024591.2 Cucumis melo HOM05D007014 ORTHO05D008894 8.7e-35 151.0 166 48.8
FvH4_2g15130 Fragaria vesca HOM05D007014 ORTHO05D008894 8.7e-35 151.0 167 48.5
BcaC07g42250 Brassica carinata HOM05D007014 ORTHO05D008894 1.1e-34 150.6 168 51.2
C08p52830 Brassica napus HOM05D007014 ORTHO05D008894 1.1e-34 150.6 168 51.2
Ca_28202_v3 Cicer arietinum L. HOM05D007014 ORTHO05D008894 1.1e-34 150.6 164 49.4
Ciclev10022606m.g Citrus clementina HOM05D007014 ORTHO05D008894 1.1e-34 150.6 164 51.2
SalBow1G7232 Salvia bowleyana HOM05D007014 ORTHO05D008894 1.5e-34 150.2 153 51.0
Migut.H01076 Erythranthe guttata HOM05D007014 ORTHO05D008894 1.9e-34 149.8 151 51.7
Prupe.3G155400 Prunus persica HOM05D007014 ORTHO05D008894 1.9e-34 149.8 164 48.2
Solyc12g010680.3 Solanum lycopersicum HOM05D007014 ORTHO05D008894 1.9e-34 149.8 166 51.2
Manes.12G090900 Manihot esculenta HOM05D007014 ORTHO05D008894 3.3e-34 149.1 164 47.6
PSO210G2618 Papaver somniferum HOM05D007014 ORTHO05D008894 3.3e-34 149.1 164 48.8
Phvul.011G117200 Phaseolus vulgaris HOM05D007014 ORTHO05D008894 3.3e-34 149.1 165 49.7
Cc05_g06870 Coffea canephora HOM05D007014 ORTHO05D008894 4.3e-34 148.7 151 52.3
FAN24G2354 Fragaria x ananassa HOM05D007014 ORTHO05D008894 4.3e-34 148.7 167 47.3
Lj3g0024821 Lotus japonicus HOM05D007014 ORTHO05D008894 5.7e-34 148.3 164 48.8
MD09G1249800 Malus domestica HOM05D007014 ORTHO05D008894 5.7e-34 148.3 170 46.5
QL08p038417 Quercus lobata HOM05D007014 ORTHO05D008894 5.7e-34 148.3 164 48.8
Cpa.g.sc34.144 Carica papaya HOM05D007014 ORTHO05D008894 7.4e-34 147.9 152 50.7
Gohir.A13G056000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 7.4e-34 147.9 168 47.6
SGA_v2.0_scaffold307G48064 Striga asiatica HOM05D007014 ORTHO05D008894 9.7e-34 147.5 162 49.4
CDE02G4296 Ceratophyllum demersum HOM05D007014 ORTHO05D008894 1.3e-33 147.1 164 47.6
Duzib052G1001 Durio zibethinus HOM05D007014 ORTHO05D008894 1.3e-33 147.1 169 48.5
Sopen12g005310 Solanum pennellii HOM05D007014 ORTHO05D008894 1.3e-33 147.1 166 49.4
MSTRG.12316 Avicennia marina HOM05D007014 ORTHO05D008894 1.6e-33 146.7 154 50.0
EL10Ac9g20747 Beta vulgaris HOM05D007014 ORTHO05D008894 2.2e-33 146.4 164 47.6
BraA09t42163Z Brassica rapa HOM05D007014 ORTHO05D008894 2.2e-33 146.4 164 50.6
RcHm_v2.0_Chr6g0277731 Rosa chinensis HOM05D007014 ORTHO05D008894 2.2e-33 146.4 164 48.2
Aqoxy4G01010 Aquilegia oxysepala HOM05D007014 ORTHO05D008894 2.8e-33 146.0 164 45.7
Glyma.12G111800 Glycine max HOM05D007014 ORTHO05D008894 2.8e-33 146.0 150 50.7
TWI36G0686 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 2.8e-33 146.0 164 46.3
BcaC07g42259 Brassica carinata HOM05D007014 ORTHO05D008894 3.7e-33 145.6 168 51.2
BolC8t52799H Brassica oleracea HOM05D007014 ORTHO05D008894 3.7e-33 145.6 164 50.6
Medtr4g046047 Medicago truncatula HOM05D007014 ORTHO05D008894 3.7e-33 145.6 164 49.4
PSO832G4125 Papaver somniferum HOM05D007014 ORTHO05D008894 3.7e-33 145.6 164 48.2
ATR0680G283 Amborella trichopoda HOM05D007014 ORTHO05D008894 4.8e-33 145.2 162 46.3
Ciclev10022631m.g Citrus clementina HOM05D007014 ORTHO05D008894 4.8e-33 145.2 151 53.0
FAN27G2134 Fragaria x ananassa HOM05D007014 ORTHO05D008894 4.8e-33 145.2 167 47.9
arahy.Tifrunner.gnm1.ann1.YPG8JQ Arachis hypogaea HOM05D007014 ORTHO05D008894 6.3e-33 144.8 170 47.6
HPP92_002954 Vanilla planifolia HOM05D007014 ORTHO05D008894 6.3e-33 144.8 167 47.3
arahy.Tifrunner.gnm1.ann1.UXPW02 Arachis hypogaea HOM05D007014 ORTHO05D008894 1.1e-32 144.1 170 47.1
TAR629G1268 Trochodendron aralioides HOM05D007014 ORTHO05D008894 1.4e-32 143.7 164 46.3
arahy.Tifrunner.gnm1.ann1.1ZYA2W Arachis hypogaea HOM05D007014 ORTHO05D008894 2.4e-32 142.9 167 47.3
Nitab4.5_0002575g0020 Nicotiana tabacum HOM05D007014 ORTHO05D008894 5.3e-32 141.7 180 44.4
Psat7g157760 Pisum sativum HOM05D007014 ORTHO05D008894 6.9e-32 141.4 164 48.8
FAN15G2141 Fragaria x ananassa HOM05D007014 ORTHO05D008894 2.6e-31 139.4 162 46.9
CANSAT78G1474 Cannabis sativa HOM05D007014 ORTHO05D008894 7.6e-31 137.9 172 44.2
CsaV3_6G013010 Cucumis sativus L. HOM05D007014 ORTHO05D008894 2.2e-30 136.3 176 44.3
Glyma.06G293600 Glycine max HOM05D007014 ORTHO05D008894 2.9e-30 136.0 164 46.3
Sc21g0002660 Simmondsia chinensis HOM05D007014 ORTHO05D008894 1.1e-29 134.0 164 45.7
CiPaw.03G175500 Carya illinoinensis HOM05D007014 ORTHO05D008894 4.2e-29 132.1 145 49.7
arahy.Tifrunner.gnm1.ann1.THUB96 Arachis hypogaea HOM05D007014 ORTHO05D008894 1.6e-28 130.2 160 46.9
Mapoly0101s0002 Marchantia polymorpha HOM05D007014 ORTHO05D008894 3.6e-28 129.0 175 45.7
ECA233G3399 Erigeron canadensis HOM05D007880 ORTHO05D003386 2.3e-27 126.3 157 45.9
Actinidia30478 Actinidia chinensis HOM05D007014 ORTHO05D008894 5.1e-27 125.2 93 66.7
AagrBONN_evm.TU.Sc2ySwM_344.4393 Anthoceros agrestis HOM05D007014 ORTHO05D008894 5.1e-27 125.2 155 49.0
Lsat_1_v5_gn_8_133041 Lactuca sativa HOM05D007014 ORTHO05D008894 5.7e-26 121.7 152 42.8
VMungo1127G0420 Vigna mungo HOM05D007014 ORTHO05D008894 7.4e-26 121.3 188 41.0
Lsat_1_v5_gn_8_132641 Lactuca sativa HOM05D007014 ORTHO05D008894 1.7e-25 120.2 88 63.6
Lalb_Chr01g0005301 Lupinus albus HOM05D007014 ORTHO05D008894 2.9e-22 109.4 88 62.5
TWI36G1550 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 3.8e-22 109.0 164 37.2
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 1.7e-17 93.6 118 45.8
A09p68280 Brassica napus HOM05D001041 ORTHO05D000846 2.8e-17 92.8 117 46.2
QL12p004320 Quercus lobata HOM05D007014 ORTHO05D008894 3.7e-17 92.4 74 58.1
PRCOL_00005877 Prasinoderma coloniale HOM05D007014 ORTHO05D008894 1.3e-14 84.0 94 53.2
Ciclev10023600m.g Citrus clementina HOM05D007014 ORTHO05D008894 1.4e-08 63.9 79 46.8
AUR62037369 Chenopodium quinoa HOM05D007014 ORTHO05D008894 3.1e-08 62.8 83 41.0
Sabra13G0113700 Salix brachista HOM05D000264 ORTHO05D000152 4.5e-07 58.9 92 39.1
Sabra11G0072100 Salix brachista HOM05D000036 ORTHO05D000095 5.9e-07 58.5 92 38.0
Sabra15G0066900 Salix brachista HOM05D000036 ORTHO05D000095 5.9e-07 58.5 92 38.0
DCAR_013001 Daucus carota HOM05D007014 ORTHO05D008894 1.3e-06 57.4 92 39.1
Hund01169 Selenicereus undatus HOM05D007014 ORTHO05D008894 5.0e-06 55.5 103 35.9


User provided reference genes

Program Settings